Wall clock time and date at job start Tue Mar 31 2020 15:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00054 * 2 1 4 4 H 1.48504 * 109.47051 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47138 * 299.99924 * 3 2 1 6 6 H 1.48493 * 109.47343 * 59.99902 * 3 2 1 7 7 C 1.38815 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99835 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.50236 * 130.84217 * 0.02967 * 9 7 2 11 11 H 1.08999 * 115.85763 * 0.34087 * 10 9 7 12 12 C 1.55840 * 101.05488 * 233.94510 * 10 9 7 13 13 C 1.56690 * 103.59718 * 326.83159 * 12 10 9 14 14 C 1.50247 * 130.83632 * 179.97438 * 9 7 2 15 15 H 1.09002 * 115.85340 * 359.67135 * 14 9 7 16 16 C 1.55839 * 101.05020 * 233.99338 * 14 9 7 17 17 H 1.09001 * 110.62530 * 85.55580 * 16 14 9 18 18 N 1.46501 * 110.62610 * 208.41574 * 16 14 9 19 19 C 1.34782 * 119.99844 * 274.06280 * 18 16 14 20 20 O 1.21635 * 119.99733 * 0.02562 * 19 18 16 21 21 C 1.47142 * 119.99870 * 179.97438 * 19 18 16 22 22 N 1.30571 * 125.53107 * 359.69324 * 21 19 18 23 23 C 1.30662 * 115.93310 * 179.77786 * 22 21 19 24 24 C 1.34439 * 115.73672 * 0.52046 * 23 22 21 25 25 Cl 1.73606 * 125.46098 * 179.74339 * 24 23 22 26 26 S 1.71068 * 109.07656 * 359.72415 * 24 23 22 27 27 C 1.54856 * 103.44840 * 327.06136 * 16 14 9 28 28 H 0.97002 * 120.00152 * 0.02562 * 1 2 3 29 29 H 1.08999 * 110.62455 * 85.54645 * 12 10 9 30 30 H 1.08998 * 110.63005 * 208.57773 * 12 10 9 31 31 H 1.09003 * 111.44018 * 241.93430 * 13 12 10 32 32 H 1.09003 * 110.61802 * 118.35727 * 13 12 10 33 33 H 0.96999 * 120.00437 * 94.05656 * 18 16 14 34 34 H 1.07994 * 122.12885 * 180.26074 * 23 22 21 35 35 H 1.08997 * 110.62402 * 118.48669 * 27 16 14 36 36 H 1.08996 * 110.62667 * 241.51455 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3880 0.0016 10 6 -0.1501 -2.6705 0.0018 11 1 -0.8015 -1.7966 -0.0049 12 6 -0.2744 -3.6097 1.2391 13 6 1.0788 -4.3996 1.2395 14 6 1.8186 -3.8073 0.0019 15 1 2.9011 -3.9343 -0.0046 16 6 1.0663 -4.3851 -1.2346 17 1 1.6238 -4.1873 -2.1501 18 7 0.8359 -5.8228 -1.0730 19 6 1.7872 -6.7034 -1.4419 20 8 2.8372 -6.3044 -1.9085 21 6 1.5560 -8.1474 -1.2790 22 7 0.4766 -8.6922 -0.7861 23 6 0.4692 -9.9977 -0.7315 24 6 1.5801 -10.6071 -1.1808 25 17 1.8427 -12.3227 -1.2182 26 16 2.6932 -9.4209 -1.7103 27 6 -0.2748 -3.6108 -1.2344 28 1 -0.4850 0.8401 -0.0004 29 1 -0.3816 -3.0271 2.1541 30 1 -1.1133 -4.2950 1.1184 31 1 0.9155 -5.4699 1.1130 32 1 1.6389 -4.2011 2.1533 33 1 -0.0013 -6.1410 -0.7004 34 1 -0.3739 -10.5516 -0.3460 35 1 -0.3824 -3.0290 -2.1498 36 1 -1.1137 -4.2960 -1.1127 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095757048.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:22 Heat of formation + Delta-G solvation = 60.827231 kcal Electronic energy + Delta-G solvation = -23056.966344 eV Core-core repulsion = 19502.716213 eV Total energy + Delta-G solvation = -3554.250132 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.51695 -39.65779 -38.25331 -37.30281 -34.07558 -32.37614 -30.78077 -29.20591 -29.04074 -27.76458 -26.32909 -24.21132 -22.56536 -21.37448 -20.33685 -19.50026 -19.09512 -18.47142 -17.52371 -16.92483 -15.84131 -15.65799 -15.50352 -14.92050 -14.68589 -14.34720 -14.07611 -13.90515 -13.73839 -12.67654 -12.55521 -12.37674 -12.26726 -11.78545 -11.52685 -11.34502 -11.08064 -10.92904 -10.91593 -10.84495 -10.58163 -10.23438 -10.11916 -10.05651 -9.84532 -9.81715 -9.45288 -9.29236 -9.27845 -8.95572 -8.60557 -6.93958 -5.74667 -3.12489 -0.25325 0.34097 1.12790 1.61927 1.96886 3.07834 3.18944 3.39008 3.44982 3.46999 3.91922 4.43969 4.58320 4.81937 5.18665 5.36167 5.45833 5.54361 5.75192 5.81590 5.90250 6.05040 6.12321 6.24818 6.30652 6.50718 6.56113 6.61291 6.76020 6.88481 6.96193 7.00467 7.23695 7.50457 7.59831 7.77576 8.13373 8.20380 9.08700 9.71132 10.50900 11.35018 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.035721 B = 0.002692 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.653736 B =10398.751874 C =10774.807432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.917 3.083 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.210 4.210 8 H 0.080 0.920 9 N -0.588 5.588 10 C 0.154 3.846 11 H 0.156 0.844 12 C -0.135 4.135 13 C -0.134 4.134 14 C 0.128 3.872 15 H 0.087 0.913 16 C 0.125 3.875 17 H 0.087 0.913 18 N -0.678 5.678 19 C 0.588 3.412 20 O -0.526 6.526 21 C 0.000 4.000 22 N -0.418 5.418 23 C 0.049 3.951 24 C -0.226 4.226 25 Cl 0.010 6.990 26 S 0.294 5.706 27 C -0.141 4.141 28 H 0.254 0.746 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.407 0.593 34 H 0.185 0.815 35 H 0.068 0.932 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.344 -22.154 -2.072 22.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.748 3.252 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.338 4.338 8 H 0.098 0.902 9 N -0.308 5.308 10 C 0.047 3.953 11 H 0.173 0.827 12 C -0.175 4.175 13 C -0.174 4.174 14 C 0.019 3.981 15 H 0.105 0.895 16 C 0.019 3.981 17 H 0.105 0.895 18 N -0.329 5.329 19 C 0.368 3.632 20 O -0.403 6.403 21 C -0.275 4.275 22 N -0.135 5.135 23 C -0.110 4.110 24 C -0.376 4.376 25 Cl 0.038 6.962 26 S 0.549 5.451 27 C -0.181 4.181 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.243 0.757 34 H 0.202 0.798 35 H 0.087 0.913 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.085 -21.262 -2.684 21.459 hybrid contribution -0.774 -0.339 0.605 1.039 sum 0.312 -21.601 -2.080 21.703 Atomic orbital electron populations 1.69438 1.05004 1.24927 1.57730 1.24704 0.95660 0.97543 1.02840 0.85948 0.78681 0.83380 0.77200 1.20524 1.21769 1.21810 1.19115 0.90431 0.81775 1.42433 0.90181 1.46482 1.01606 0.98740 1.84004 1.23781 0.87714 0.95191 0.88593 0.82715 1.23350 0.95008 0.97951 1.01179 1.23263 0.97721 0.97568 0.98845 1.23185 0.96289 0.86204 0.92406 0.89539 1.22862 0.98770 0.75666 1.00802 0.89484 1.46071 1.18462 1.07042 1.61311 1.16654 0.84824 0.82134 0.79546 1.90887 1.25455 1.78367 1.45556 1.27999 0.93989 1.00031 1.05501 1.66971 1.22729 1.09928 1.13882 1.21820 0.98591 0.88828 1.01791 1.26727 1.02807 0.93730 1.14334 1.98391 1.96009 1.04607 1.97150 1.84296 1.14867 0.93095 1.52891 1.23315 0.93737 0.98430 1.02601 0.93572 0.92553 0.93543 0.92819 0.92929 0.75698 0.79770 0.91298 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.81 10.46 55.49 0.58 -25.22 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.21 -5.69 10.59 -15.06 -0.16 -5.85 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.59 -14.38 2.99 -145.82 -0.44 -14.82 16 10 C 0.15 3.40 4.72 -62.82 -0.30 3.10 16 11 H 0.16 3.92 5.52 -51.93 -0.29 3.63 16 12 C -0.14 -2.59 6.49 -23.22 -0.15 -2.74 16 13 C -0.13 -2.47 6.46 -23.20 -0.15 -2.62 16 14 C 0.13 2.64 5.30 -62.78 -0.33 2.31 16 15 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 16 C 0.12 2.28 3.07 -65.44 -0.20 2.08 16 17 H 0.09 1.74 7.70 -51.93 -0.40 1.34 16 18 N -0.68 -10.27 3.61 -52.55 -0.19 -10.46 16 19 C 0.59 9.06 7.80 -12.64 -0.10 8.96 16 20 O -0.53 -9.60 16.67 5.25 0.09 -9.51 16 21 C 0.00 0.00 7.45 -14.48 -0.11 -0.11 16 22 N -0.42 -4.87 10.24 -11.50 -0.12 -4.99 16 23 C 0.05 0.47 11.21 -19.39 -0.22 0.25 16 24 C -0.23 -2.05 6.95 29.39 0.20 -1.85 16 25 Cl 0.01 0.08 29.30 -51.86 -1.52 -1.44 16 26 S 0.29 2.99 23.03 -107.50 -2.48 0.51 16 27 C -0.14 -2.62 6.20 -24.25 -0.15 -2.77 16 28 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.05 0.76 7.81 -51.93 -0.41 0.35 16 31 H 0.05 0.87 6.47 -51.93 -0.34 0.54 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.41 5.50 7.69 -40.82 -0.31 5.19 16 34 H 0.19 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.06 0.90 7.35 -51.93 -0.38 0.52 16 LS Contribution 328.20 15.07 4.95 4.95 Total: -1.00 -29.13 328.20 -9.69 -38.81 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -3.78 Total: 5.08 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.76 Total: 0.32 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.16 Total: -55.49 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -2.48 Total: 0.51 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -1.52 Total: -1.44 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.13 -9.69 -38.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095757048.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.640 kcal (2) G-P(sol) polarization free energy of solvation -29.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds