Wall clock time and date at job start Tue Mar 31 2020 15:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00054 * 2 1 4 4 H 1.48504 * 109.47051 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47138 * 299.99924 * 3 2 1 6 6 H 1.48493 * 109.47343 * 59.99902 * 3 2 1 7 7 C 1.38815 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99835 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.50236 * 130.84217 * 0.02967 * 9 7 2 11 11 H 1.08999 * 115.85763 * 0.34087 * 10 9 7 12 12 C 1.55840 * 101.05488 * 233.94510 * 10 9 7 13 13 C 1.56690 * 103.59718 * 326.83159 * 12 10 9 14 14 C 1.50247 * 130.83632 * 179.97438 * 9 7 2 15 15 H 1.09002 * 115.85340 * 359.67135 * 14 9 7 16 16 C 1.55839 * 101.05020 * 233.99338 * 14 9 7 17 17 H 1.09001 * 110.62530 * 85.55580 * 16 14 9 18 18 N 1.46501 * 110.62610 * 208.41574 * 16 14 9 19 19 C 1.34782 * 119.99844 * 274.06280 * 18 16 14 20 20 O 1.21635 * 119.99733 * 0.02562 * 19 18 16 21 21 C 1.47142 * 119.99870 * 179.97438 * 19 18 16 22 22 N 1.30571 * 125.53107 * 359.69324 * 21 19 18 23 23 C 1.30662 * 115.93310 * 179.77786 * 22 21 19 24 24 C 1.34439 * 115.73672 * 0.52046 * 23 22 21 25 25 Cl 1.73606 * 125.46098 * 179.74339 * 24 23 22 26 26 S 1.71068 * 109.07656 * 359.72415 * 24 23 22 27 27 C 1.54856 * 103.44840 * 327.06136 * 16 14 9 28 28 H 0.97002 * 120.00152 * 0.02562 * 1 2 3 29 29 H 1.08999 * 110.62455 * 85.54645 * 12 10 9 30 30 H 1.08998 * 110.63005 * 208.57773 * 12 10 9 31 31 H 1.09003 * 111.44018 * 241.93430 * 13 12 10 32 32 H 1.09003 * 110.61802 * 118.35727 * 13 12 10 33 33 H 0.96999 * 120.00437 * 94.05656 * 18 16 14 34 34 H 1.07994 * 122.12885 * 180.26074 * 23 22 21 35 35 H 1.08997 * 110.62402 * 118.48669 * 27 16 14 36 36 H 1.08996 * 110.62667 * 241.51455 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3880 0.0016 10 6 -0.1501 -2.6705 0.0018 11 1 -0.8015 -1.7966 -0.0049 12 6 -0.2744 -3.6097 1.2391 13 6 1.0788 -4.3996 1.2395 14 6 1.8186 -3.8073 0.0019 15 1 2.9011 -3.9343 -0.0046 16 6 1.0663 -4.3851 -1.2346 17 1 1.6238 -4.1873 -2.1501 18 7 0.8359 -5.8228 -1.0730 19 6 1.7872 -6.7034 -1.4419 20 8 2.8372 -6.3044 -1.9085 21 6 1.5560 -8.1474 -1.2790 22 7 0.4766 -8.6922 -0.7861 23 6 0.4692 -9.9977 -0.7315 24 6 1.5801 -10.6071 -1.1808 25 17 1.8427 -12.3227 -1.2182 26 16 2.6932 -9.4209 -1.7103 27 6 -0.2748 -3.6108 -1.2344 28 1 -0.4850 0.8401 -0.0004 29 1 -0.3816 -3.0271 2.1541 30 1 -1.1133 -4.2950 1.1184 31 1 0.9155 -5.4699 1.1130 32 1 1.6389 -4.2011 2.1533 33 1 -0.0013 -6.1410 -0.7004 34 1 -0.3739 -10.5516 -0.3460 35 1 -0.3824 -3.0290 -2.1498 36 1 -1.1137 -4.2960 -1.1127 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095757048.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:20 Heat of formation + Delta-G solvation = 43.045789 kcal Electronic energy + Delta-G solvation = -23057.737406 eV Core-core repulsion = 19502.716213 eV Total energy + Delta-G solvation = -3555.021193 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.69268 -40.80237 -39.62151 -37.99807 -35.56246 -34.23022 -31.74705 -30.94364 -30.61280 -29.23397 -27.38108 -26.05149 -23.65030 -22.79635 -21.66046 -20.99282 -20.32144 -19.75123 -18.90447 -18.36209 -17.07798 -16.82257 -16.78535 -16.44744 -16.08589 -15.73854 -15.27800 -15.11023 -15.03106 -14.11178 -13.95299 -13.48549 -13.38934 -13.23961 -13.20183 -12.87572 -12.79283 -12.62049 -12.37288 -12.04891 -11.97435 -11.89056 -11.69548 -11.53563 -11.19541 -11.09095 -10.97961 -10.80425 -10.62269 -10.21708 -9.94696 -8.86071 -7.78565 -5.17898 -1.11744 -0.46835 0.33421 0.87493 1.09448 1.48129 1.48708 1.58324 1.99026 2.03685 2.50519 2.94897 3.35244 3.51987 3.73265 3.91187 4.01054 4.08889 4.15680 4.35607 4.47078 4.60952 4.70318 4.78708 4.80336 4.95891 5.05845 5.13950 5.15291 5.31432 5.43829 5.52924 5.69891 5.88535 6.10935 6.28064 6.44838 6.99331 7.07518 7.69968 8.55611 9.28618 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.035721 B = 0.002692 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.653736 B =10398.751874 C =10774.807432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.063 4.063 3 Si 0.976 3.024 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.223 4.223 8 H 0.073 0.927 9 N -0.615 5.615 10 C 0.139 3.861 11 H 0.123 0.877 12 C -0.125 4.125 13 C -0.120 4.120 14 C 0.120 3.880 15 H 0.072 0.928 16 C 0.144 3.856 17 H 0.066 0.934 18 N -0.671 5.671 19 C 0.592 3.408 20 O -0.561 6.561 21 C -0.034 4.034 22 N -0.417 5.417 23 C 0.045 3.955 24 C -0.215 4.215 25 Cl 0.029 6.971 26 S 0.319 5.681 27 C -0.126 4.126 28 H 0.249 0.751 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.419 0.581 34 H 0.213 0.787 35 H 0.053 0.947 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.911 -25.111 -1.863 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.256 4.256 3 Si 0.805 3.195 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.352 4.352 8 H 0.091 0.909 9 N -0.337 5.337 10 C 0.033 3.967 11 H 0.140 0.860 12 C -0.164 4.164 13 C -0.159 4.159 14 C 0.012 3.988 15 H 0.090 0.910 16 C 0.037 3.963 17 H 0.084 0.916 18 N -0.322 5.322 19 C 0.375 3.625 20 O -0.440 6.440 21 C -0.307 4.307 22 N -0.135 5.135 23 C -0.115 4.115 24 C -0.365 4.365 25 Cl 0.058 6.942 26 S 0.573 5.427 27 C -0.166 4.166 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.257 0.743 34 H 0.230 0.770 35 H 0.072 0.928 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.505 -24.268 -2.469 24.398 hybrid contribution -0.548 0.362 0.522 0.839 sum -0.043 -23.906 -1.946 23.985 Atomic orbital electron populations 1.69663 1.05881 1.25009 1.58773 1.25405 0.96542 1.00163 1.03460 0.85039 0.77910 0.79864 0.76686 1.19818 1.21939 1.21954 1.19342 0.90554 0.83404 1.41851 0.90884 1.46713 1.02957 0.99389 1.84646 1.23689 0.86057 0.95421 0.91525 0.85978 1.23240 0.96676 0.97766 0.98733 1.23160 0.96706 0.98881 0.97179 1.23314 0.96077 0.84849 0.94601 0.90987 1.22306 0.97844 0.77529 0.98589 0.91624 1.45792 1.19138 1.05581 1.61706 1.16905 0.83963 0.83326 0.78306 1.90869 1.26812 1.79381 1.46919 1.27363 0.95743 0.98973 1.08656 1.66955 1.22296 1.11047 1.13191 1.22212 0.99482 0.88134 1.01664 1.26873 1.02275 0.94577 1.12763 1.98411 1.95886 1.03009 1.96926 1.84267 1.14126 0.92379 1.51905 1.23138 0.95121 0.98168 1.00190 0.94128 0.94469 0.89811 0.89922 0.93746 0.74291 0.77026 0.92841 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.39 10.46 21.65 0.23 -54.16 16 2 C -0.06 -3.52 5.50 84.86 0.47 -3.06 16 3 Si 0.98 45.89 29.55 68.60 2.03 47.91 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 7 C -0.22 -12.46 10.59 84.03 0.89 -11.57 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 9 N -0.62 -30.83 2.99 -615.25 -1.84 -32.67 16 10 C 0.14 6.18 4.72 46.22 0.22 6.40 16 11 H 0.12 6.36 5.52 -2.39 -0.01 6.35 16 12 C -0.12 -4.62 6.49 32.87 0.21 -4.41 16 13 C -0.12 -4.25 6.46 32.88 0.21 -4.04 16 14 C 0.12 4.96 5.30 46.24 0.25 5.21 16 15 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 16 C 0.14 5.21 3.07 46.61 0.14 5.35 16 17 H 0.07 2.68 7.70 -2.39 -0.02 2.66 16 18 N -0.67 -19.19 3.61 -438.42 -1.58 -20.77 16 19 C 0.59 17.59 7.80 86.58 0.68 18.26 16 20 O -0.56 -20.43 16.67 -4.14 -0.07 -20.50 16 21 C -0.03 -0.80 7.45 87.22 0.65 -0.15 16 22 N -0.42 -8.49 10.24 -190.29 -1.95 -10.44 16 23 C 0.04 0.69 11.21 84.00 0.94 1.63 16 24 C -0.21 -3.23 6.95 66.95 0.47 -2.76 16 25 Cl 0.03 0.35 29.30 -2.72 -0.08 0.27 16 26 S 0.32 5.81 23.03 -56.49 -1.30 4.51 16 27 C -0.13 -4.60 6.20 32.20 0.20 -4.40 16 28 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 2.46 7.81 -2.39 -0.02 2.44 16 31 H 0.08 2.45 6.47 -2.39 -0.02 2.44 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.42 10.04 7.69 -92.71 -0.71 9.33 16 34 H 0.21 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.09 2.70 7.35 -2.39 -0.02 2.68 16 Total: -1.00 -64.88 328.20 1.18 -63.70 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.43 Total: 15.67 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 5.32 Total: 6.46 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -5.14 Total: -118.04 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.07 Total: -20.50 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 16 Polarization: 5.81 SS G_CDS: -1.30 Total: 4.51 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -0.08 Total: 0.27 kcal Total: -64.88 1.18 -63.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095757048.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.746 kcal (2) G-P(sol) polarization free energy of solvation -64.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds