Wall clock time and date at job start Tue Mar 31 2020 15:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00177 * 2 1 4 4 H 1.48499 * 109.47077 * 269.99762 * 3 2 1 5 5 H 1.48501 * 109.47220 * 29.99759 * 3 2 1 6 6 H 1.48498 * 109.47416 * 149.99879 * 3 2 1 7 7 C 1.38807 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00611 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99905 * 0.02562 * 7 2 1 10 10 C 1.50235 * 130.83597 * 359.97438 * 9 7 2 11 11 H 1.08998 * 115.86287 * 0.35179 * 10 9 7 12 12 C 1.55845 * 101.75277 * 234.15278 * 10 9 7 13 13 C 1.56684 * 102.59911 * 327.30896 * 12 10 9 14 14 C 1.50241 * 130.84269 * 179.97438 * 9 7 2 15 15 H 1.09005 * 115.85536 * 359.64781 * 14 9 7 16 16 C 1.55839 * 101.05387 * 233.97323 * 14 9 7 17 17 H 1.08998 * 110.76309 * 85.61467 * 16 14 9 18 18 N 1.46492 * 110.62597 * 208.57129 * 16 14 9 19 19 C 1.34776 * 120.00160 * 270.02425 * 18 16 14 20 20 O 1.21704 * 119.99922 * 359.97438 * 19 18 16 21 21 C 1.46524 * 120.00158 * 179.97438 * 19 18 16 22 22 S 1.76218 * 126.17593 * 0.34670 * 21 19 18 23 23 C 1.70920 * 90.38710 * 180.02562 * 22 21 19 24 24 N 1.29362 * 110.62062 * 359.66023 * 23 22 21 25 25 C 1.31044 * 117.45500 * 0.26802 * 24 23 22 26 26 Cl 1.73594 * 123.05294 * 180.02562 * 25 24 23 27 27 C 1.54853 * 103.44423 * 327.06091 * 16 14 9 28 28 H 0.97005 * 120.00112 * 0.02562 * 1 2 3 29 29 H 1.09003 * 110.62480 * 85.31535 * 12 10 9 30 30 H 1.09000 * 110.63069 * 208.34235 * 12 10 9 31 31 H 1.09005 * 110.35235 * 241.21488 * 13 12 10 32 32 H 1.09001 * 110.88999 * 118.36372 * 13 12 10 33 33 H 0.97005 * 120.00175 * 90.02684 * 18 16 14 34 34 H 1.08004 * 124.68839 * 179.97438 * 23 22 21 35 35 H 1.09000 * 110.62472 * 118.48907 * 27 16 14 36 36 H 1.09000 * 110.63104 * 241.50703 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1500 -2.6705 0.0005 11 1 -0.8014 -1.7966 -0.0055 12 6 -0.2938 -3.6078 1.2373 13 6 1.0668 -4.3847 1.2373 14 6 1.8186 -3.8072 0.0005 15 1 2.9012 -3.9344 -0.0055 16 6 1.0669 -4.3847 -1.2364 17 1 1.6234 -4.1888 -2.1529 18 7 0.8331 -5.8217 -1.0737 19 6 1.7482 -6.7075 -1.5147 20 8 2.7685 -6.3136 -2.0486 21 6 1.5146 -8.1448 -1.3514 22 16 0.0989 -8.8914 -0.6141 23 6 0.7566 -10.4437 -0.8955 24 7 1.9045 -10.3521 -1.4849 25 6 2.3533 -9.1498 -1.7500 26 17 3.8734 -8.8587 -2.5362 27 6 -0.2742 -3.6104 -1.2365 28 1 -0.4850 0.8401 -0.0004 29 1 -0.4022 -3.0237 2.1512 30 1 -1.1389 -4.2844 1.1102 31 1 0.8929 -5.4540 1.1162 32 1 1.6260 -4.1892 2.1523 33 1 0.0197 -6.1357 -0.6485 34 1 0.2775 -11.3727 -0.6238 35 1 -0.3814 -3.0284 -2.1518 36 1 -1.1132 -4.2956 -1.1155 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096555930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:02 Heat of formation + Delta-G solvation = 42.898375 kcal Electronic energy + Delta-G solvation = -23373.772294 eV Core-core repulsion = 19818.744708 eV Total energy + Delta-G solvation = -3555.027585 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.60600 -40.84398 -39.53831 -37.65426 -35.53814 -34.23943 -31.92817 -30.95584 -30.60139 -29.20990 -27.18156 -26.07673 -23.63386 -22.68459 -21.44186 -21.17937 -20.22461 -20.08560 -18.89937 -17.92930 -17.33519 -16.80241 -16.70237 -16.15222 -16.06368 -15.77076 -15.61427 -15.10639 -14.91478 -14.11008 -13.95907 -13.46630 -13.32221 -13.13347 -12.89909 -12.86438 -12.78156 -12.59232 -12.39198 -12.13863 -11.99987 -11.91175 -11.55923 -11.34918 -11.15560 -11.03593 -10.84518 -10.79356 -10.77487 -10.09617 -9.91588 -8.85639 -7.79087 -5.18264 -1.00051 -0.18331 0.30394 1.04070 1.18914 1.46990 1.48088 1.55936 1.94546 1.98855 2.50170 3.32784 3.35348 3.52136 3.69955 3.79070 3.97319 4.10674 4.16996 4.37242 4.47785 4.53139 4.60401 4.70778 4.78762 4.97553 5.05018 5.15130 5.16304 5.32352 5.45872 5.52774 5.72865 5.88756 6.20565 6.28540 6.44194 7.05369 7.10267 7.69726 8.55273 9.27502 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.023394 B = 0.003383 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.582861 B = 8275.576335 C = 9087.584836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.060 4.060 3 Si 0.973 3.027 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.225 4.225 8 H 0.070 0.930 9 N -0.617 5.617 10 C 0.137 3.863 11 H 0.121 0.879 12 C -0.126 4.126 13 C -0.117 4.117 14 C 0.118 3.882 15 H 0.067 0.933 16 C 0.147 3.853 17 H 0.060 0.940 18 N -0.690 5.690 19 C 0.586 3.414 20 O -0.550 6.550 21 C -0.314 4.314 22 S 0.297 5.703 23 C 0.056 3.944 24 N -0.501 5.501 25 C 0.168 3.832 26 Cl 0.004 6.996 27 C -0.127 4.127 28 H 0.249 0.751 29 H 0.037 0.963 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.409 0.591 34 H 0.262 0.738 35 H 0.048 0.952 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.256 -23.189 0.726 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.253 4.253 3 Si 0.803 3.197 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.354 4.354 8 H 0.088 0.912 9 N -0.338 5.338 10 C 0.031 3.969 11 H 0.138 0.862 12 C -0.165 4.165 13 C -0.156 4.156 14 C 0.010 3.990 15 H 0.085 0.915 16 C 0.040 3.960 17 H 0.078 0.922 18 N -0.342 5.342 19 C 0.371 3.629 20 O -0.429 6.429 21 C -0.440 4.440 22 S 0.551 5.449 23 C -0.238 4.238 24 N -0.216 5.216 25 C 0.001 3.999 26 Cl 0.032 6.968 27 C -0.166 4.166 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.247 0.753 34 H 0.277 0.723 35 H 0.067 0.933 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.064 -22.710 0.637 23.514 hybrid contribution 1.605 1.247 -0.526 2.100 sum -4.459 -21.463 0.110 21.921 Atomic orbital electron populations 1.69653 1.05780 1.25054 1.58649 1.25358 0.96527 1.00009 1.03385 0.85150 0.77571 0.79778 0.77250 1.21722 1.21686 1.20249 1.19283 0.90465 0.83570 1.42104 0.91205 1.46704 1.03058 0.99362 1.84722 1.23678 0.85855 0.95621 0.91747 0.86160 1.23273 0.96573 0.98026 0.98599 1.23110 0.96526 0.99050 0.96929 1.23329 0.95892 0.84919 0.94900 0.91454 1.22195 0.97681 0.77812 0.98295 0.92216 1.45824 1.22239 1.05790 1.60367 1.16886 0.83583 0.83883 0.78545 1.90882 1.27954 1.79765 1.44323 1.25684 1.03750 0.98106 1.16491 1.83744 1.13749 0.98135 1.49232 1.29455 0.92379 1.05298 0.96656 1.65710 1.15109 1.23378 1.17411 1.21238 0.91813 0.87951 0.98894 1.98436 1.26006 1.95077 1.77279 1.23156 0.95184 0.98227 1.00063 0.94110 0.94419 0.88912 0.89800 0.93771 0.75279 0.72256 0.93301 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.91 10.46 21.65 0.23 -53.69 16 2 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 3 Si 0.97 45.96 29.55 68.60 2.03 47.98 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.23 -12.67 10.59 84.03 0.89 -11.78 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.62 -30.75 2.99 -615.25 -1.84 -32.59 16 10 C 0.14 5.93 4.67 46.23 0.22 6.14 16 11 H 0.12 6.14 5.52 -2.39 -0.01 6.12 16 12 C -0.13 -4.34 6.58 32.87 0.22 -4.12 16 13 C -0.12 -3.93 6.37 32.86 0.21 -3.72 16 14 C 0.12 4.84 5.35 46.22 0.25 5.09 16 15 H 0.07 2.99 8.14 -2.38 -0.02 2.97 16 16 C 0.15 5.25 3.14 46.61 0.15 5.40 16 17 H 0.06 2.50 7.58 -2.39 -0.02 2.49 16 18 N -0.69 -18.49 3.70 -439.04 -1.62 -20.11 16 19 C 0.59 17.49 7.78 86.40 0.67 18.16 16 20 O -0.55 -21.23 14.83 -4.36 -0.06 -21.30 16 21 C -0.31 -7.21 6.52 24.10 0.16 -7.06 16 22 S 0.30 3.10 22.35 -56.49 -1.26 1.84 16 23 C 0.06 0.54 12.20 130.61 1.59 2.14 16 24 N -0.50 -9.92 10.50 -192.57 -2.02 -11.94 16 25 C 0.17 4.19 7.41 84.48 0.63 4.82 16 26 Cl 0.00 0.10 27.38 -2.72 -0.07 0.03 16 27 C -0.13 -4.46 6.20 32.22 0.20 -4.26 16 28 H 0.25 13.89 8.31 -92.70 -0.77 13.12 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.09 2.37 7.81 -2.39 -0.02 2.35 16 31 H 0.08 2.20 6.39 -2.38 -0.02 2.18 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 33 H 0.41 7.96 7.10 -92.70 -0.66 7.30 16 34 H 0.26 -0.24 8.06 -2.91 -0.02 -0.26 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.10 2.56 7.37 -2.39 -0.02 2.55 16 Total: -1.00 -73.61 323.92 1.49 -72.12 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.49 Total: 9.72 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 5.64 Total: 7.94 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -5.26 Total: -118.33 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.06 Total: -21.30 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -1.26 Total: 1.84 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -0.07 Total: 0.03 kcal Total: -73.61 1.49 -72.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096555930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.016 kcal (2) G-P(sol) polarization free energy of solvation -73.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds