Wall clock time and date at job start Tue Mar 31 2020 15:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00251 * 2 1 4 4 H 1.48506 * 109.47263 * 272.90209 * 3 2 1 5 5 H 1.48509 * 109.47135 * 32.89718 * 3 2 1 6 6 H 1.48493 * 109.47478 * 152.90089 * 3 2 1 7 7 C 1.38810 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00163 * 338.09428 * 7 2 1 9 9 N 1.36936 * 119.99876 * 158.09914 * 7 2 1 10 10 C 1.50237 * 130.83765 * 171.59929 * 9 7 2 11 11 H 1.08997 * 115.86349 * 0.34830 * 10 9 7 12 12 C 1.55847 * 101.75098 * 234.15455 * 10 9 7 13 13 C 1.56686 * 102.59664 * 327.30154 * 12 10 9 14 14 C 1.50238 * 130.83989 * 351.58945 * 9 7 2 15 15 H 1.08996 * 116.45589 * 0.02562 * 14 9 7 16 16 C 1.55842 * 101.05201 * 233.97433 * 14 9 7 17 17 H 1.09001 * 110.62794 * 208.57451 * 16 14 9 18 18 N 1.46496 * 110.62851 * 85.71141 * 16 14 9 19 19 C 1.34786 * 119.99900 * 155.00060 * 18 16 14 20 20 O 1.21632 * 119.99868 * 359.97438 * 19 18 16 21 21 C 1.47244 * 119.99529 * 179.97438 * 19 18 16 22 22 C 1.35156 * 123.13462 * 179.97438 * 21 19 18 23 23 S 1.70926 * 108.86392 * 179.97438 * 22 21 19 24 24 C 1.70766 * 91.14729 * 359.97438 * 23 22 21 25 25 Cl 1.73597 * 124.72687 * 179.97438 * 24 23 22 26 26 N 1.28772 * 110.54884 * 359.76634 * 24 23 22 27 27 C 1.54856 * 103.44433 * 327.05930 * 16 14 9 28 28 H 0.97004 * 119.99829 * 0.02562 * 1 2 3 29 29 H 1.08995 * 110.63025 * 85.31674 * 12 10 9 30 30 H 1.09008 * 110.62666 * 208.17894 * 12 10 9 31 31 H 1.08994 * 110.35822 * 241.21880 * 13 12 10 32 32 H 1.09001 * 110.74594 * 118.30162 * 13 12 10 33 33 H 0.96994 * 120.00292 * 334.99776 * 18 16 14 34 34 H 1.08008 * 125.56412 * 359.96301 * 22 21 19 35 35 H 1.09001 * 110.62408 * 118.49264 * 27 16 14 36 36 H 1.09003 * 110.62567 * 241.34891 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4364 2.0818 -1.3983 5 1 1.4797 2.6342 0.7605 6 1 3.5771 1.4232 0.6377 7 6 2.0102 -1.2022 0.0005 8 1 1.5287 -2.1035 0.3499 9 7 3.3054 -1.2452 -0.4418 10 6 4.3234 -2.3491 -0.3949 11 1 3.9920 -3.2825 0.0599 12 6 5.5219 -1.6458 0.3108 13 6 5.3925 -0.1665 -0.1891 14 6 4.1459 -0.2031 -1.1236 15 1 3.6695 0.7594 -1.3097 16 6 4.6131 -0.9789 -2.3918 17 1 5.5793 -0.6086 -2.7343 18 7 3.6143 -0.8736 -3.4584 19 6 3.9872 -1.0091 -4.7465 20 8 5.1529 -1.2183 -5.0234 21 6 2.9831 -0.9037 -5.8184 22 6 3.2864 -1.0285 -7.1296 23 16 1.8563 -0.8446 -8.0475 24 6 0.9347 -0.6124 -6.6288 25 17 -0.7775 -0.3277 -6.5973 26 7 1.6859 -0.6823 -5.5853 27 6 4.7341 -2.4408 -1.8954 28 1 -0.4850 0.8401 -0.0004 29 1 5.4128 -1.6959 1.3941 30 1 6.4664 -2.0927 0.0002 31 1 6.2824 0.1244 -0.7472 32 1 5.2248 0.5108 0.6484 33 1 2.6848 -0.7064 -3.2376 34 1 4.2716 -1.2138 -7.5316 35 1 4.0497 -3.0897 -2.4418 36 1 5.7598 -2.7962 -1.9944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098165365.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:17 Heat of formation + Delta-G solvation = 64.893039 kcal Electronic energy + Delta-G solvation = -23624.168934 eV Core-core repulsion = 20070.095109 eV Total energy + Delta-G solvation = -3554.073825 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 3.20 seconds Orbital eigenvalues (eV) -40.60592 -39.60964 -38.14596 -37.03412 -33.89358 -32.56072 -30.71274 -29.62909 -29.27753 -28.50239 -25.85365 -24.00899 -23.04581 -21.20948 -20.24442 -19.89373 -19.05498 -18.90290 -17.07409 -16.93256 -16.32225 -15.92749 -15.57211 -15.02225 -14.42993 -14.14568 -14.04334 -13.79331 -13.46960 -13.23226 -12.72038 -12.28686 -12.20200 -12.03087 -11.60716 -11.54886 -11.43183 -11.12842 -11.03190 -10.88593 -10.36678 -10.31851 -10.20130 -10.03552 -9.94787 -9.73433 -9.54660 -9.28937 -9.15331 -8.90628 -8.56224 -7.26327 -5.92973 -3.18532 0.18723 0.45786 1.20660 1.64882 1.79340 3.28839 3.40916 3.43652 3.46705 3.50126 4.21406 4.51431 4.62882 4.94670 4.99554 5.13296 5.28998 5.40190 5.50321 5.62083 5.68158 5.81061 5.88527 5.91272 6.03374 6.16961 6.23398 6.40746 6.47706 6.64541 6.72557 6.84406 6.93623 7.07987 7.34320 7.91507 8.30289 8.43363 8.70828 9.63848 10.22763 11.23211 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013153 B = 0.004796 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.207451 B = 5837.340225 C = 7270.379080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.019 3.981 3 Si 0.865 3.135 4 H -0.290 1.290 5 H -0.304 1.304 6 H -0.261 1.261 7 C -0.226 4.226 8 H 0.098 0.902 9 N -0.603 5.603 10 C 0.141 3.859 11 H 0.096 0.904 12 C -0.133 4.133 13 C -0.134 4.134 14 C 0.115 3.885 15 H 0.095 0.905 16 C 0.129 3.871 17 H 0.088 0.912 18 N -0.685 5.685 19 C 0.589 3.411 20 O -0.546 6.546 21 C 0.028 3.972 22 C -0.226 4.226 23 S 0.266 5.734 24 C 0.050 3.950 25 Cl 0.035 6.965 26 N -0.421 5.421 27 C -0.137 4.137 28 H 0.262 0.738 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.419 0.581 34 H 0.198 0.802 35 H 0.065 0.935 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.807 -1.904 -15.620 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.179 4.179 3 Si 0.697 3.303 4 H -0.218 1.218 5 H -0.232 1.232 6 H -0.186 1.186 7 C -0.353 4.353 8 H 0.116 0.884 9 N -0.326 5.326 10 C 0.033 3.967 11 H 0.114 0.886 12 C -0.173 4.173 13 C -0.174 4.174 14 C 0.008 3.992 15 H 0.113 0.887 16 C 0.022 3.978 17 H 0.106 0.894 18 N -0.333 5.333 19 C 0.372 3.628 20 O -0.424 6.424 21 C -0.107 4.107 22 C -0.368 4.368 23 S 0.517 5.483 24 C -0.255 4.255 25 Cl 0.063 6.937 26 N -0.138 5.138 27 C -0.177 4.177 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.256 0.744 34 H 0.215 0.785 35 H 0.084 0.916 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.580 -1.886 -16.149 17.189 hybrid contribution 0.264 1.167 0.955 1.531 sum 5.843 -0.718 -15.194 16.295 Atomic orbital electron populations 1.69824 1.05267 1.26320 1.53816 1.24689 0.95020 0.97002 1.01175 0.87203 0.80428 0.85503 0.77164 1.21844 1.23224 1.18579 1.18633 0.83081 0.95869 1.37682 0.88400 1.46869 1.09513 1.09392 1.66787 1.22928 0.88161 0.92546 0.93018 0.88634 1.23302 0.98124 0.95634 1.00196 1.23363 0.97106 0.97350 0.99536 1.23356 0.91553 0.93570 0.90749 0.88737 1.22630 0.91086 0.97203 0.86872 0.89380 1.45931 1.13844 1.69096 1.04469 1.16973 0.86180 0.77541 0.82130 1.90777 1.17455 1.50966 1.83247 1.20397 0.89518 1.06870 0.93891 1.26768 1.06102 1.07059 0.96854 1.82836 0.95064 1.62208 1.08160 1.27199 0.94861 1.09258 0.94134 1.98454 1.03145 1.94087 1.98016 1.66755 1.02883 1.13031 1.31158 1.23372 1.00384 0.95713 0.98265 0.92801 0.92104 0.92127 0.92277 0.91229 0.74389 0.78489 0.91619 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.65 13.97 55.49 0.78 -26.87 16 2 C 0.02 0.54 5.49 -17.43 -0.10 0.45 16 3 Si 0.86 21.86 24.62 -169.99 -4.18 17.68 16 4 H -0.29 -7.27 6.75 56.52 0.38 -6.89 16 5 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 6 H -0.26 -6.19 4.84 56.52 0.27 -5.92 16 7 C -0.23 -6.18 10.94 -15.06 -0.16 -6.34 16 8 H 0.10 2.85 8.06 -52.49 -0.42 2.43 16 9 N -0.60 -13.81 2.85 -145.83 -0.42 -14.22 16 10 C 0.14 2.62 5.43 -62.80 -0.34 2.28 16 11 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 12 C -0.13 -2.19 6.58 -23.22 -0.15 -2.35 16 13 C -0.13 -2.41 6.26 -23.22 -0.15 -2.55 16 14 C 0.12 2.40 3.14 -62.80 -0.20 2.20 16 15 H 0.10 2.17 3.49 -51.93 -0.18 1.99 16 16 C 0.13 2.41 2.80 -65.44 -0.18 2.23 16 17 H 0.09 1.59 7.22 -51.93 -0.38 1.21 16 18 N -0.68 -13.27 5.08 -52.52 -0.27 -13.53 16 19 C 0.59 10.68 7.80 -12.60 -0.10 10.58 16 20 O -0.55 -10.47 16.36 5.25 0.09 -10.38 16 21 C 0.03 0.45 6.70 -84.51 -0.57 -0.12 16 22 C -0.23 -2.66 10.61 29.64 0.31 -2.34 16 23 S 0.27 2.45 22.96 -107.50 -2.47 -0.02 16 24 C 0.05 0.67 7.98 51.48 0.41 1.08 16 25 Cl 0.04 0.44 29.33 -51.86 -1.52 -1.08 16 26 N -0.42 -6.96 10.13 -9.45 -0.10 -7.05 16 27 C -0.14 -2.40 6.22 -24.24 -0.15 -2.55 16 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.84 7.81 -51.92 -0.41 0.44 16 31 H 0.06 0.91 7.82 -51.93 -0.41 0.51 16 32 H 0.07 1.33 6.58 -51.93 -0.34 0.99 16 33 H 0.42 8.91 8.18 -40.82 -0.33 8.58 16 34 H 0.20 1.93 8.03 -52.48 -0.42 1.51 16 35 H 0.07 1.21 7.98 -51.93 -0.41 0.80 16 36 H 0.07 1.01 7.81 -51.93 -0.41 0.61 16 LS Contribution 321.53 15.07 4.85 4.85 Total: -1.00 -31.74 321.53 -8.45 -40.19 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -3.84 Total: 7.88 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -1.37 Total: 2.58 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.00 Total: -61.68 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.18 Total: 17.68 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.47 Total: -0.02 kcal Atomic # 17 Polarization: 0.44 SS G_CDS: -1.52 Total: -1.08 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.74 -8.45 -40.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098165365.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.084 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.20 seconds