Wall clock time and date at job start Tue Mar 31 2020 15:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00251 * 2 1 4 4 H 1.48506 * 109.47263 * 272.90209 * 3 2 1 5 5 H 1.48509 * 109.47135 * 32.89718 * 3 2 1 6 6 H 1.48493 * 109.47478 * 152.90089 * 3 2 1 7 7 C 1.38810 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00163 * 338.09428 * 7 2 1 9 9 N 1.36936 * 119.99876 * 158.09914 * 7 2 1 10 10 C 1.50237 * 130.83765 * 171.59929 * 9 7 2 11 11 H 1.08997 * 115.86349 * 0.34830 * 10 9 7 12 12 C 1.55847 * 101.75098 * 234.15455 * 10 9 7 13 13 C 1.56686 * 102.59664 * 327.30154 * 12 10 9 14 14 C 1.50238 * 130.83989 * 351.58945 * 9 7 2 15 15 H 1.08996 * 116.45589 * 0.02562 * 14 9 7 16 16 C 1.55842 * 101.05201 * 233.97433 * 14 9 7 17 17 H 1.09001 * 110.62794 * 208.57451 * 16 14 9 18 18 N 1.46496 * 110.62851 * 85.71141 * 16 14 9 19 19 C 1.34786 * 119.99900 * 155.00060 * 18 16 14 20 20 O 1.21632 * 119.99868 * 359.97438 * 19 18 16 21 21 C 1.47244 * 119.99529 * 179.97438 * 19 18 16 22 22 C 1.35156 * 123.13462 * 179.97438 * 21 19 18 23 23 S 1.70926 * 108.86392 * 179.97438 * 22 21 19 24 24 C 1.70766 * 91.14729 * 359.97438 * 23 22 21 25 25 Cl 1.73597 * 124.72687 * 179.97438 * 24 23 22 26 26 N 1.28772 * 110.54884 * 359.76634 * 24 23 22 27 27 C 1.54856 * 103.44433 * 327.05930 * 16 14 9 28 28 H 0.97004 * 119.99829 * 0.02562 * 1 2 3 29 29 H 1.08995 * 110.63025 * 85.31674 * 12 10 9 30 30 H 1.09008 * 110.62666 * 208.17894 * 12 10 9 31 31 H 1.08994 * 110.35822 * 241.21880 * 13 12 10 32 32 H 1.09001 * 110.74594 * 118.30162 * 13 12 10 33 33 H 0.96994 * 120.00292 * 334.99776 * 18 16 14 34 34 H 1.08008 * 125.56412 * 359.96301 * 22 21 19 35 35 H 1.09001 * 110.62408 * 118.49264 * 27 16 14 36 36 H 1.09003 * 110.62567 * 241.34891 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4364 2.0818 -1.3983 5 1 1.4797 2.6342 0.7605 6 1 3.5771 1.4232 0.6377 7 6 2.0102 -1.2022 0.0005 8 1 1.5287 -2.1035 0.3499 9 7 3.3054 -1.2452 -0.4418 10 6 4.3234 -2.3491 -0.3949 11 1 3.9920 -3.2825 0.0599 12 6 5.5219 -1.6458 0.3108 13 6 5.3925 -0.1665 -0.1891 14 6 4.1459 -0.2031 -1.1236 15 1 3.6695 0.7594 -1.3097 16 6 4.6131 -0.9789 -2.3918 17 1 5.5793 -0.6086 -2.7343 18 7 3.6143 -0.8736 -3.4584 19 6 3.9872 -1.0091 -4.7465 20 8 5.1529 -1.2183 -5.0234 21 6 2.9831 -0.9037 -5.8184 22 6 3.2864 -1.0285 -7.1296 23 16 1.8563 -0.8446 -8.0475 24 6 0.9347 -0.6124 -6.6288 25 17 -0.7775 -0.3277 -6.5973 26 7 1.6859 -0.6823 -5.5853 27 6 4.7341 -2.4408 -1.8954 28 1 -0.4850 0.8401 -0.0004 29 1 5.4128 -1.6959 1.3941 30 1 6.4664 -2.0927 0.0002 31 1 6.2824 0.1244 -0.7472 32 1 5.2248 0.5108 0.6484 33 1 2.6848 -0.7064 -3.2376 34 1 4.2716 -1.2138 -7.5316 35 1 4.0497 -3.0897 -2.4418 36 1 5.7598 -2.7962 -1.9944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098165365.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:10 Heat of formation + Delta-G solvation = 41.684630 kcal Electronic energy + Delta-G solvation = -23625.175326 eV Core-core repulsion = 20070.095109 eV Total energy + Delta-G solvation = -3555.080217 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.055 amu Computer time = 4.46 seconds Orbital eigenvalues (eV) -41.85206 -40.98311 -39.48039 -37.99658 -35.37540 -34.58465 -31.78264 -31.48999 -30.73100 -29.90728 -26.96886 -25.89981 -24.26915 -22.55333 -21.95034 -21.04335 -20.48145 -20.15933 -18.95477 -18.29462 -17.51213 -17.29873 -16.80920 -16.56341 -15.82082 -15.50950 -15.32936 -15.24985 -15.05553 -14.83769 -14.35384 -13.92949 -13.30264 -13.16435 -13.09390 -12.89011 -12.86912 -12.83435 -12.57799 -12.39806 -11.98675 -11.86650 -11.62600 -11.38189 -11.23706 -11.12274 -10.93275 -10.92222 -10.87825 -10.22483 -9.93933 -9.21397 -8.12297 -5.31642 -0.77291 -0.42937 0.26963 0.63022 0.71018 1.24449 1.36062 1.43950 2.13887 2.18739 2.42134 2.92647 3.08591 3.18245 3.74150 3.80507 3.91619 3.99906 4.05804 4.23902 4.29839 4.41677 4.45901 4.55575 4.60927 4.70505 4.78652 5.05920 5.11057 5.20977 5.32175 5.39822 5.53776 5.59624 6.02363 6.13043 6.45830 6.62820 7.00952 7.50459 8.23376 9.07786 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013153 B = 0.004796 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.207451 B = 5837.340225 C = 7270.379080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.041 4.041 3 Si 0.924 3.076 4 H -0.293 1.293 5 H -0.320 1.320 6 H -0.236 1.236 7 C -0.202 4.202 8 H 0.066 0.934 9 N -0.625 5.625 10 C 0.133 3.867 11 H 0.098 0.902 12 C -0.119 4.119 13 C -0.131 4.131 14 C 0.103 3.897 15 H 0.071 0.929 16 C 0.132 3.868 17 H 0.103 0.897 18 N -0.698 5.698 19 C 0.590 3.410 20 O -0.560 6.560 21 C -0.011 4.011 22 C -0.217 4.217 23 S 0.399 5.601 24 C 0.015 3.985 25 Cl 0.030 6.970 26 N -0.467 5.467 27 C -0.125 4.125 28 H 0.257 0.743 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.406 0.594 34 H 0.220 0.780 35 H 0.049 0.951 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.908 -2.257 -17.820 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.234 4.234 3 Si 0.757 3.243 4 H -0.222 1.222 5 H -0.250 1.250 6 H -0.160 1.160 7 C -0.330 4.330 8 H 0.084 0.916 9 N -0.349 5.349 10 C 0.028 3.972 11 H 0.116 0.884 12 C -0.158 4.158 13 C -0.170 4.170 14 C -0.004 4.004 15 H 0.089 0.911 16 C 0.026 3.974 17 H 0.121 0.879 18 N -0.345 5.345 19 C 0.375 3.625 20 O -0.441 6.441 21 C -0.146 4.146 22 C -0.360 4.360 23 S 0.651 5.349 24 C -0.288 4.288 25 Cl 0.058 6.942 26 N -0.186 5.186 27 C -0.165 4.165 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.241 0.759 34 H 0.237 0.763 35 H 0.067 0.933 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.753 -2.261 -18.372 20.476 hybrid contribution -0.691 1.144 1.442 1.966 sum 8.062 -1.117 -16.931 18.785 Atomic orbital electron populations 1.69959 1.06934 1.26524 1.57320 1.25233 0.95532 0.99987 1.02685 0.86249 0.79984 0.81325 0.76758 1.22211 1.24958 1.15954 1.18516 0.85100 0.94415 1.34985 0.91580 1.46931 1.09020 1.11811 1.67099 1.23220 0.87920 0.91773 0.94336 0.88383 1.23248 0.98488 0.94193 0.99890 1.23357 0.96697 0.98241 0.98713 1.23506 0.92191 0.92250 0.92430 0.91141 1.22639 0.91353 0.97488 0.85945 0.87915 1.46044 1.13152 1.69895 1.05416 1.17267 0.86605 0.76524 0.82125 1.90741 1.18056 1.51801 1.83466 1.20083 0.89155 1.10791 0.94550 1.27224 1.08650 1.03991 0.96147 1.82402 0.90926 1.58175 1.03349 1.27531 0.95063 1.10158 0.96063 1.98446 1.03457 1.94182 1.98125 1.66641 1.03711 1.14580 1.33705 1.23302 1.01811 0.94681 0.96734 0.93445 0.92151 0.88168 0.88915 0.92437 0.75926 0.76301 0.93260 0.88286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.48 13.97 21.65 0.30 -61.18 16 2 C -0.04 -2.42 5.49 84.86 0.47 -1.95 16 3 Si 0.92 46.99 24.62 68.60 1.69 48.68 16 4 H -0.29 -14.83 6.75 99.48 0.67 -14.16 16 5 H -0.32 -16.87 7.11 99.48 0.71 -16.16 16 6 H -0.24 -10.83 4.84 99.48 0.48 -10.35 16 7 C -0.20 -11.39 10.94 84.03 0.92 -10.47 16 8 H 0.07 4.05 8.06 -2.91 -0.02 4.03 16 9 N -0.63 -28.56 2.85 -615.28 -1.76 -30.32 16 10 C 0.13 4.71 5.43 46.23 0.25 4.96 16 11 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 12 C -0.12 -3.47 6.58 32.87 0.22 -3.26 16 13 C -0.13 -4.27 6.26 32.87 0.21 -4.06 16 14 C 0.10 4.15 3.14 46.23 0.15 4.30 16 15 H 0.07 3.21 3.49 -2.39 -0.01 3.20 16 16 C 0.13 4.73 2.80 46.61 0.13 4.86 16 17 H 0.10 3.40 7.22 -2.39 -0.02 3.38 16 18 N -0.70 -27.12 5.08 -438.32 -2.23 -29.34 16 19 C 0.59 21.08 7.80 86.61 0.68 21.75 16 20 O -0.56 -20.60 16.36 -4.13 -0.07 -20.67 16 21 C -0.01 -0.33 6.70 40.53 0.27 -0.06 16 22 C -0.22 -4.53 10.61 67.11 0.71 -3.82 16 23 S 0.40 6.04 22.96 -56.49 -1.30 4.75 16 24 C 0.01 0.39 7.98 130.69 1.04 1.43 16 25 Cl 0.03 0.75 29.33 -2.72 -0.08 0.67 16 26 N -0.47 -15.57 10.13 -183.80 -1.86 -17.44 16 27 C -0.13 -4.10 6.22 32.21 0.20 -3.89 16 28 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.10 2.19 7.81 -2.38 -0.02 2.18 16 31 H 0.09 2.43 7.82 -2.39 -0.02 2.41 16 32 H 0.06 2.02 6.58 -2.39 -0.02 2.00 16 33 H 0.41 17.96 8.18 -92.71 -0.76 17.20 16 34 H 0.22 3.47 8.03 -2.91 -0.02 3.45 16 35 H 0.05 1.77 7.98 -2.39 -0.02 1.75 16 36 H 0.10 2.60 7.81 -2.39 -0.02 2.59 16 Total: -1.00 -73.37 321.53 0.07 -73.31 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.13 Total: 21.76 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 5.24 Total: 9.79 kcal Atomic # 7 Polarization: -132.74 SS G_CDS: -5.54 Total: -138.28 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.07 Total: -20.67 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.69 Total: 48.68 kcal Atomic # 16 Polarization: 6.04 SS G_CDS: -1.30 Total: 4.75 kcal Atomic # 17 Polarization: 0.75 SS G_CDS: -0.08 Total: 0.67 kcal Total: -73.37 0.07 -73.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098165365.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.990 kcal (2) G-P(sol) polarization free energy of solvation -73.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.46 seconds