Wall clock time and date at job start Tue Mar 31 2020 15:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 119.99852 * 2 1 4 4 H 1.48496 * 109.46777 * 269.99716 * 3 2 1 5 5 H 1.48501 * 109.46807 * 29.99936 * 3 2 1 6 6 H 1.48504 * 109.46961 * 149.99984 * 3 2 1 7 7 C 1.38802 * 120.00450 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99804 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00251 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00092 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 9 13 13 S 1.81002 * 109.47004 * 180.02562 * 12 11 10 14 14 C 1.76193 * 100.00049 * 180.02562 * 13 12 11 15 15 N 1.31146 * 126.38047 * 359.68888 * 14 13 12 16 16 N 1.28660 * 109.30919 * 179.82697 * 15 14 13 17 17 C 1.30075 * 109.56128 * 0.44949 * 16 15 14 18 18 C 1.50703 * 126.20436 * 179.71212 * 17 16 15 19 19 N 1.46499 * 109.46991 * 90.01800 * 18 17 16 20 20 C 1.34429 * 126.81847 * 125.00257 * 19 18 17 21 21 N 1.30829 * 108.07795 * 179.97438 * 20 19 18 22 22 C 1.33242 * 109.82644 * 359.97438 * 21 20 19 23 23 N 1.30712 * 108.94673 * 359.75538 * 22 21 20 24 24 O 1.34636 * 126.38115 * 180.02562 * 14 13 12 25 25 H 0.96996 * 120.00276 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46718 * 59.99828 * 10 9 7 27 27 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 28 28 H 1.09001 * 109.46652 * 60.00210 * 11 10 9 29 29 H 1.08992 * 109.47514 * 300.00299 * 11 10 9 30 30 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 31 31 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 32 32 H 1.09001 * 109.46565 * 210.01841 * 18 17 16 33 33 H 1.08996 * 109.47044 * 330.01589 * 18 17 16 34 34 H 1.07998 * 125.96539 * 359.97438 * 20 19 18 35 35 H 1.08007 * 125.53101 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9845 0.0009 11 6 5.5959 -3.2361 0.0008 12 6 5.8616 -4.7429 0.0012 13 16 7.6469 -5.0407 0.0019 14 6 7.6633 -6.8026 0.0015 15 7 6.6147 -7.5902 0.0066 16 7 7.0037 -8.8165 0.0008 17 6 8.3037 -8.8610 0.0014 18 6 9.1517 -10.1068 0.0018 19 7 9.4275 -10.5103 -1.3792 20 6 10.6352 -10.7173 -1.9322 21 7 10.4559 -11.0649 -3.1807 22 6 9.1533 -11.0912 -3.4599 23 7 8.4825 -10.7643 -2.3866 24 8 8.7545 -7.5911 0.0022 25 1 -0.4850 0.8400 -0.0004 26 1 3.6441 -3.4313 -0.8893 27 1 3.6435 -3.4317 0.8907 28 1 6.0388 -2.7892 0.8909 29 1 6.0388 -2.7890 -0.8890 30 1 5.4187 -5.1898 0.8914 31 1 5.4186 -5.1902 -0.8886 32 1 10.0915 -9.9063 0.5164 33 1 8.6201 -10.9080 0.5152 34 1 11.5873 -10.6146 -1.4330 35 1 8.7214 -11.3459 -4.4165 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116208589.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:11 Heat of formation + Delta-G solvation = 130.472070 kcal Electronic energy + Delta-G solvation = -20893.790168 eV Core-core repulsion = 17376.896520 eV Total energy + Delta-G solvation = -3516.893648 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.056 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.55686 -42.58008 -36.64870 -35.53512 -34.69891 -32.48911 -31.86683 -31.72613 -28.44116 -27.28202 -25.68393 -24.56760 -23.72737 -22.53686 -22.19672 -21.71531 -18.96250 -18.40428 -17.57365 -17.50211 -16.99267 -16.67762 -15.65466 -15.53683 -15.35987 -15.00512 -14.95475 -14.55170 -14.30621 -13.88886 -13.02877 -12.94668 -12.83786 -12.61710 -12.50533 -12.39426 -12.07450 -11.66104 -11.26241 -11.18414 -11.03522 -10.84864 -10.78622 -10.50949 -10.49164 -10.32165 -10.30926 -9.86809 -9.05879 -8.66802 -8.29395 -7.02970 -6.32881 -4.07006 0.12534 0.37060 1.01967 1.52081 1.58393 2.07754 2.14645 2.46621 2.92550 3.26247 3.40318 3.46594 3.49870 3.73550 3.78788 4.26349 4.26935 4.36538 4.47638 4.59991 4.67353 4.75789 4.77935 4.88154 4.92200 5.05772 5.24619 5.48538 5.62072 5.63398 5.86358 5.93422 6.12144 6.18456 6.42772 7.51433 7.72196 7.90586 8.40273 9.12199 10.76446 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.032289 B = 0.001827 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.967005 B =15323.350198 C =15509.733956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.092 3.908 3 Si 0.861 3.139 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.238 1.238 7 C -0.504 4.504 8 H 0.090 0.910 9 S -0.209 6.209 10 C -0.079 4.079 11 C -0.088 4.088 12 C -0.110 4.110 13 S 0.070 5.930 14 C 0.153 3.847 15 N -0.287 5.287 16 N -0.231 5.231 17 C 0.123 3.877 18 C 0.241 3.759 19 N -0.391 5.391 20 C 0.264 3.736 21 N -0.541 5.541 22 C 0.203 3.797 23 N -0.302 5.302 24 O -0.206 6.206 25 H 0.271 0.729 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.224 0.776 35 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.671 -20.577 0.579 32.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.116 4.116 3 Si 0.686 3.314 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.162 1.162 7 C -0.652 4.652 8 H 0.108 0.892 9 S 0.019 5.981 10 C -0.229 4.229 11 C -0.129 4.129 12 C -0.260 4.260 13 S 0.301 5.699 14 C -0.164 4.164 15 N -0.140 5.140 16 N -0.079 5.079 17 C -0.093 4.093 18 C 0.117 3.883 19 N -0.184 5.184 20 C -0.033 4.033 21 N -0.267 5.267 22 C -0.100 4.100 23 N -0.128 5.128 24 O -0.086 6.086 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.241 0.759 35 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 24.348 -19.210 0.460 31.017 hybrid contribution -0.462 -0.719 0.112 0.862 sum 23.886 -19.930 0.572 31.113 Atomic orbital electron populations 1.69930 1.05912 1.27791 1.47933 1.24796 0.94521 0.99022 0.93294 0.86677 0.81708 0.83249 0.79741 1.19321 1.20023 1.16179 1.22100 0.86803 0.97533 1.58763 0.89239 1.84159 1.12066 1.04303 1.97583 1.23018 0.95384 1.00001 1.04537 1.21156 0.97091 0.90283 1.04375 1.24023 0.91295 1.02343 1.08344 1.86143 1.12395 0.81392 1.89937 1.30289 0.82252 1.02326 1.01520 1.75072 1.24002 0.95167 1.19742 1.74155 1.08547 1.12704 1.12488 1.27554 0.91952 0.84915 1.04924 1.19899 1.00373 0.88594 0.79460 1.50544 1.05522 1.51841 1.10528 1.26264 0.91568 0.95288 0.90184 1.70597 1.18664 1.24102 1.13359 1.26181 0.87612 0.97483 0.98686 1.78313 1.14326 1.22815 0.97308 1.84964 1.36418 1.16695 1.70531 0.91889 0.90801 0.90742 0.90006 0.90037 0.87658 0.87730 0.84478 0.84308 0.75949 0.76311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.35 13.97 55.49 0.78 -25.57 16 2 C 0.09 2.65 5.50 -17.43 -0.10 2.56 16 3 Si 0.86 21.08 27.74 -169.99 -4.72 16.36 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.24 -5.66 6.74 56.52 0.38 -5.27 16 7 C -0.50 -14.31 10.04 30.94 0.31 -14.00 16 8 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 9 S -0.21 -4.86 19.41 -107.50 -2.09 -6.94 16 10 C -0.08 -1.41 5.67 37.16 0.21 -1.20 16 11 C -0.09 -1.19 5.22 -26.73 -0.14 -1.33 16 12 C -0.11 -1.28 5.23 37.16 0.19 -1.09 16 13 S 0.07 0.75 22.31 -107.50 -2.40 -1.65 16 14 C 0.15 1.88 8.53 52.47 0.45 2.33 16 15 N -0.29 -4.08 11.63 30.29 0.35 -3.73 16 16 N -0.23 -3.06 12.20 32.59 0.40 -2.66 16 17 C 0.12 1.21 7.94 -13.02 -0.10 1.10 16 18 C 0.24 1.09 7.17 -5.19 -0.04 1.06 16 19 N -0.39 -2.77 3.68 -63.81 -0.23 -3.00 16 20 C 0.26 1.46 12.63 -90.66 -1.14 0.31 16 21 N -0.54 -4.60 11.19 -15.83 -0.18 -4.77 16 22 C 0.20 1.77 13.03 -91.81 -1.20 0.57 16 23 N -0.30 -3.12 12.56 29.29 0.37 -2.75 16 24 O -0.21 -2.25 10.90 3.52 0.04 -2.21 16 25 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 27 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.10 1.22 8.14 -51.91 -0.42 0.80 16 31 H 0.10 1.25 8.14 -51.92 -0.42 0.83 16 32 H 0.14 -0.04 8.09 -51.93 -0.42 -0.46 16 33 H 0.14 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.22 0.06 8.06 -52.49 -0.42 -0.36 16 35 H 0.22 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 345.05 15.07 5.20 5.20 Total: -1.00 -36.94 345.05 -7.84 -44.77 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: -3.80 Total: -3.35 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -1.55 Total: -9.69 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 1.48 Total: -42.49 kcal Atomic # 8 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.72 Total: 16.36 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -4.48 Total: -8.60 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.94 -7.84 -44.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116208589.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.245 kcal (2) G-P(sol) polarization free energy of solvation -36.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds