Wall clock time and date at job start Tue Mar 31 2020 15:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 119.99852 * 2 1 4 4 H 1.48496 * 109.46777 * 269.99716 * 3 2 1 5 5 H 1.48501 * 109.46807 * 29.99936 * 3 2 1 6 6 H 1.48504 * 109.46961 * 149.99984 * 3 2 1 7 7 C 1.38802 * 120.00450 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99804 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00251 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00092 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 9 13 13 S 1.81002 * 109.47004 * 180.02562 * 12 11 10 14 14 C 1.76193 * 100.00049 * 180.02562 * 13 12 11 15 15 N 1.31146 * 126.38047 * 359.68888 * 14 13 12 16 16 N 1.28660 * 109.30919 * 179.82697 * 15 14 13 17 17 C 1.30075 * 109.56128 * 0.44949 * 16 15 14 18 18 C 1.50703 * 126.20436 * 179.71212 * 17 16 15 19 19 N 1.46499 * 109.46991 * 90.01800 * 18 17 16 20 20 C 1.34429 * 126.81847 * 125.00257 * 19 18 17 21 21 N 1.30829 * 108.07795 * 179.97438 * 20 19 18 22 22 C 1.33242 * 109.82644 * 359.97438 * 21 20 19 23 23 N 1.30712 * 108.94673 * 359.75538 * 22 21 20 24 24 O 1.34636 * 126.38115 * 180.02562 * 14 13 12 25 25 H 0.96996 * 120.00276 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46718 * 59.99828 * 10 9 7 27 27 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 28 28 H 1.09001 * 109.46652 * 60.00210 * 11 10 9 29 29 H 1.08992 * 109.47514 * 300.00299 * 11 10 9 30 30 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 31 31 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 32 32 H 1.09001 * 109.46565 * 210.01841 * 18 17 16 33 33 H 1.08996 * 109.47044 * 330.01589 * 18 17 16 34 34 H 1.07998 * 125.96539 * 359.97438 * 20 19 18 35 35 H 1.08007 * 125.53101 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9845 0.0009 11 6 5.5959 -3.2361 0.0008 12 6 5.8616 -4.7429 0.0012 13 16 7.6469 -5.0407 0.0019 14 6 7.6633 -6.8026 0.0015 15 7 6.6147 -7.5902 0.0066 16 7 7.0037 -8.8165 0.0008 17 6 8.3037 -8.8610 0.0014 18 6 9.1517 -10.1068 0.0018 19 7 9.4275 -10.5103 -1.3792 20 6 10.6352 -10.7173 -1.9322 21 7 10.4559 -11.0649 -3.1807 22 6 9.1533 -11.0912 -3.4599 23 7 8.4825 -10.7643 -2.3866 24 8 8.7545 -7.5911 0.0022 25 1 -0.4850 0.8400 -0.0004 26 1 3.6441 -3.4313 -0.8893 27 1 3.6435 -3.4317 0.8907 28 1 6.0388 -2.7892 0.8909 29 1 6.0388 -2.7890 -0.8890 30 1 5.4187 -5.1898 0.8914 31 1 5.4186 -5.1902 -0.8886 32 1 10.0915 -9.9063 0.5164 33 1 8.6201 -10.9080 0.5152 34 1 11.5873 -10.6146 -1.4330 35 1 8.7214 -11.3459 -4.4165 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116208589.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:11 Heat of formation + Delta-G solvation = 103.134234 kcal Electronic energy + Delta-G solvation = -20894.975626 eV Core-core repulsion = 17376.896520 eV Total energy + Delta-G solvation = -3518.079105 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.056 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.40254 -43.08358 -37.52130 -36.04170 -35.87149 -34.68812 -32.61267 -32.28621 -29.15038 -28.47046 -27.80287 -25.44601 -24.46659 -23.01776 -22.99284 -22.67644 -19.84342 -19.61047 -19.06989 -18.19111 -17.73173 -17.28163 -17.11636 -16.67817 -16.54613 -16.17386 -15.69510 -15.47035 -15.02107 -14.92609 -14.28680 -14.24427 -14.08444 -13.76466 -13.58925 -13.25993 -13.10756 -13.03628 -12.90941 -12.51843 -12.20061 -12.16149 -11.80877 -11.76579 -11.67837 -11.16704 -11.08751 -11.01471 -10.88633 -10.60263 -9.13779 -8.99638 -8.51908 -6.23915 -0.73713 -0.40749 0.51576 0.64986 0.83642 1.13289 1.33138 1.42307 1.47934 1.49951 1.74009 1.94193 2.24556 2.65773 2.86176 2.87982 3.36546 3.47148 3.58797 3.73723 3.79186 3.81371 3.94069 4.00505 4.10002 4.22938 4.26009 4.33393 4.54206 4.70494 4.91293 5.09983 5.12667 5.33322 5.69302 5.75869 6.10647 6.85992 6.91593 7.01173 8.61133 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.032289 B = 0.001827 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.967005 B =15323.350198 C =15509.733956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.036 3.964 3 Si 0.927 3.073 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.225 1.225 7 C -0.525 4.525 8 H 0.050 0.950 9 S -0.207 6.207 10 C -0.070 4.070 11 C -0.076 4.076 12 C -0.110 4.110 13 S 0.111 5.889 14 C 0.140 3.860 15 N -0.320 5.320 16 N -0.276 5.276 17 C 0.144 3.856 18 C 0.236 3.764 19 N -0.396 5.396 20 C 0.280 3.720 21 N -0.575 5.575 22 C 0.198 3.802 23 N -0.354 5.354 24 O -0.205 6.205 25 H 0.277 0.723 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.195 0.805 33 H 0.156 0.844 34 H 0.276 0.724 35 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.451 -20.596 1.267 35.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.169 4.169 3 Si 0.748 3.252 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.148 1.148 7 C -0.673 4.673 8 H 0.068 0.932 9 S 0.021 5.979 10 C -0.220 4.220 11 C -0.117 4.117 12 C -0.260 4.260 13 S 0.342 5.658 14 C -0.177 4.177 15 N -0.172 5.172 16 N -0.123 5.123 17 C -0.073 4.073 18 C 0.113 3.887 19 N -0.189 5.189 20 C -0.015 4.015 21 N -0.302 5.302 22 C -0.105 4.105 23 N -0.180 5.180 24 O -0.085 6.085 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.213 0.787 33 H 0.173 0.827 34 H 0.291 0.709 35 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 28.117 -19.253 1.158 34.097 hybrid contribution -1.559 -0.922 -0.099 1.814 sum 26.559 -20.175 1.059 33.369 Atomic orbital electron populations 1.70042 1.07766 1.29141 1.49115 1.25825 0.95438 1.02924 0.92720 0.85695 0.80852 0.78439 0.80240 1.18612 1.18921 1.14787 1.22355 0.90227 0.96249 1.58456 0.93190 1.83752 1.07356 1.09222 1.97596 1.23070 0.98901 0.95776 1.04263 1.20994 0.93540 0.91725 1.05435 1.23816 0.93130 1.00854 1.08249 1.85908 1.09959 0.80165 1.89768 1.30497 0.82423 1.03019 1.01810 1.74985 1.25309 0.95975 1.20923 1.74085 1.10616 1.12563 1.15012 1.28597 0.91661 0.85735 1.01318 1.20640 1.02693 0.86536 0.78844 1.50600 1.05520 1.51983 1.10803 1.27267 0.92545 0.92399 0.89298 1.70610 1.18569 1.25759 1.15232 1.26563 0.87993 0.96827 0.99107 1.78235 1.16492 1.24654 0.98628 1.84975 1.35895 1.17067 1.70586 0.91416 0.91269 0.90980 0.88816 0.89108 0.87648 0.88204 0.78746 0.82695 0.70862 0.74935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.67 13.97 21.65 0.30 -56.37 16 2 C 0.04 2.07 5.50 84.86 0.47 2.54 16 3 Si 0.93 43.27 27.74 68.60 1.90 45.17 16 4 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.22 -9.93 6.74 99.48 0.67 -9.26 16 7 C -0.53 -30.54 10.04 67.95 0.68 -29.86 16 8 H 0.05 3.18 8.03 -2.91 -0.02 3.16 16 9 S -0.21 -9.50 19.41 -56.49 -1.10 -10.60 16 10 C -0.07 -2.47 5.67 71.98 0.41 -2.06 16 11 C -0.08 -1.92 5.22 30.59 0.16 -1.76 16 12 C -0.11 -2.43 5.23 71.98 0.38 -2.05 16 13 S 0.11 2.15 22.31 -56.49 -1.26 0.89 16 14 C 0.14 3.28 8.53 130.35 1.11 4.39 16 15 N -0.32 -9.05 11.63 -172.08 -2.00 -11.05 16 16 N -0.28 -7.24 12.20 -165.24 -2.02 -9.26 16 17 C 0.14 2.57 7.94 88.37 0.70 3.27 16 18 C 0.24 1.37 7.17 85.63 0.61 1.99 16 19 N -0.40 -4.65 3.68 -355.81 -1.31 -5.96 16 20 C 0.28 2.20 12.63 180.36 2.28 4.48 16 21 N -0.57 -8.84 11.19 -204.00 -2.28 -11.12 16 22 C 0.20 3.36 13.03 180.76 2.36 5.71 16 23 N -0.35 -7.11 12.56 -61.24 -0.77 -7.88 16 24 O -0.20 -4.05 10.90 -10.31 -0.11 -4.17 16 25 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.20 -1.18 8.09 -2.39 -0.02 -1.20 16 33 H 0.16 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.28 -1.30 8.06 -2.91 -0.02 -1.32 16 35 H 0.23 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -84.21 345.05 1.60 -82.61 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: 1.09 Total: 1.08 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 9.15 Total: -13.35 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -8.08 Total: -101.64 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.11 Total: -4.17 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.90 Total: 45.17 kcal Atomic # 16 Polarization: -7.35 SS G_CDS: -2.36 Total: -9.71 kcal Total: -84.21 1.60 -82.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116208589.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.745 kcal (2) G-P(sol) polarization free energy of solvation -84.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds