Wall clock time and date at job start Tue Mar 31 2020 15:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00009 * 2 1 4 4 H 1.48495 * 109.47124 * 269.99501 * 3 2 1 5 5 H 1.48494 * 109.47057 * 29.99830 * 3 2 1 6 6 H 1.48506 * 109.47156 * 149.99867 * 3 2 1 7 7 C 1.37884 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99489 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00305 * 180.02562 * 7 2 1 10 10 N 1.46896 * 109.47039 * 185.91606 * 9 7 2 11 11 C 1.46903 * 110.99634 * 195.42174 * 10 9 7 12 12 C 1.50698 * 109.47062 * 169.99794 * 11 10 9 13 13 C 1.34505 * 125.78188 * 89.99547 * 12 11 10 14 14 C 1.41400 * 106.84870 * 180.02562 * 13 12 11 15 15 C 1.34618 * 106.83372 * 359.97438 * 14 13 12 16 16 Br 1.89098 * 125.79886 * 179.97438 * 15 14 13 17 17 O 1.34307 * 108.40395 * 359.74294 * 15 14 13 18 18 C 1.46895 * 111.00597 * 71.46463 * 10 9 7 19 19 C 1.55239 * 110.46389 * 24.81642 * 18 10 9 20 20 C 1.54890 * 102.58436 * 203.39743 * 19 18 10 21 21 C 1.54267 * 104.31654 * 37.93381 * 20 19 18 22 22 C 1.53877 * 106.59493 * 336.32192 * 21 20 19 23 23 H 0.97003 * 120.00145 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46997 * 65.90731 * 9 7 2 25 25 H 1.09003 * 109.46901 * 305.91193 * 9 7 2 26 26 H 1.09005 * 109.46801 * 289.99716 * 11 10 9 27 27 H 1.09000 * 109.47476 * 49.99210 * 11 10 9 28 28 H 1.07996 * 126.57469 * 359.97438 * 13 12 11 29 29 H 1.07998 * 126.57783 * 180.02562 * 14 13 12 30 30 H 1.09000 * 110.43604 * 147.46889 * 18 10 9 31 31 H 1.08993 * 110.89722 * 85.10927 * 19 18 10 32 32 H 1.08994 * 110.77185 * 321.62394 * 19 18 10 33 33 H 1.09006 * 110.48531 * 279.18478 * 20 19 18 34 34 H 1.09001 * 110.48610 * 156.67903 * 20 19 18 35 35 H 1.08997 * 110.03074 * 95.60401 * 21 20 19 36 36 H 1.09001 * 110.03265 * 216.98890 * 21 20 19 37 37 H 1.09002 * 110.02701 * 119.28524 * 22 21 20 38 38 H 1.08998 * 110.03330 * 240.66083 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5717 -0.1411 11 6 5.4230 -2.6645 0.2165 12 6 5.8271 -4.1141 0.2972 13 6 6.3050 -4.8551 -0.7185 14 6 6.5507 -6.1483 -0.2021 15 6 6.2086 -6.1199 1.0995 16 35 6.3232 -7.5720 2.3053 17 8 5.7767 -4.8836 1.3975 18 6 3.7662 -3.0764 -1.5005 19 6 3.6727 -1.8989 -2.5079 20 6 2.8541 -2.5136 -3.6704 21 6 1.8078 -3.4053 -2.9704 22 6 2.3878 -3.7631 -1.5907 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.7744 0.9393 25 1 3.8752 -0.5915 -0.8312 26 1 6.0222 -2.1621 -0.5430 27 1 5.5866 -2.1873 1.1827 28 1 6.4687 -4.5258 -1.7339 29 1 6.9393 -6.9958 -0.7473 30 1 4.5568 -3.7680 -1.7917 31 1 4.6636 -1.5997 -2.8493 32 1 3.1433 -1.0542 -2.0672 33 1 3.4972 -3.1136 -4.3143 34 1 2.3629 -1.7299 -4.2471 35 1 0.8717 -2.8597 -2.8518 36 1 1.6404 -4.3116 -3.5523 37 1 1.7330 -3.3911 -0.8026 38 1 2.5015 -4.8435 -1.5023 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138904987.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:17 Heat of formation + Delta-G solvation = 39.773054 kcal Electronic energy + Delta-G solvation = -20714.972500 eV Core-core repulsion = 17606.169177 eV Total energy + Delta-G solvation = -3108.803323 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.56155 -38.68346 -34.82133 -33.18345 -32.72345 -31.91386 -29.91724 -28.13227 -27.59472 -26.76878 -23.82119 -21.99759 -21.62739 -20.37015 -19.68276 -18.64421 -17.29852 -16.66978 -16.23658 -15.49611 -15.10378 -14.46778 -14.19015 -13.93742 -13.48614 -13.26895 -12.93357 -12.85290 -12.47183 -12.37868 -11.76509 -11.60480 -11.35476 -11.02957 -10.93228 -10.72470 -10.62569 -10.54307 -10.36590 -10.23423 -10.04197 -9.85186 -9.73432 -9.54201 -8.87466 -8.58536 -8.35634 -7.42403 -6.06232 -4.03460 0.88109 1.55858 2.52506 3.23633 3.32930 3.33977 3.37999 4.38196 4.64956 4.92382 4.93392 5.22505 5.30467 5.35793 5.46583 5.56707 5.59198 5.68340 5.79724 5.92515 5.93293 6.17012 6.21867 6.26540 6.39319 6.41041 6.47492 6.58920 6.63140 6.69551 6.85240 7.02185 7.04777 7.16234 7.22727 7.63805 7.80923 7.98183 8.62296 9.08420 9.54031 11.05638 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.018853 B = 0.003641 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.838592 B = 7688.681675 C = 8241.582324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.865 3.135 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.504 4.504 8 H 0.093 0.907 9 C 0.154 3.846 10 N -0.517 5.517 11 C 0.120 3.880 12 C 0.051 3.949 13 C -0.218 4.218 14 C -0.150 4.150 15 C -0.041 4.041 16 Br 0.038 6.962 17 O -0.151 6.151 18 C 0.089 3.911 19 C -0.164 4.164 20 C -0.115 4.115 21 C -0.116 4.116 22 C -0.115 4.115 23 H 0.263 0.737 24 H 0.024 0.976 25 H 0.005 0.995 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.153 0.847 29 H 0.155 0.845 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.113 0.887 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.046 0.954 37 H 0.102 0.898 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.348 -12.732 -1.145 19.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.692 3.308 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.542 4.542 8 H 0.111 0.889 9 C 0.029 3.971 10 N -0.240 5.240 11 C -0.008 4.008 12 C -0.002 4.002 13 C -0.239 4.239 14 C -0.172 4.172 15 C -0.169 4.169 16 Br 0.122 6.878 17 O -0.046 6.046 18 C -0.020 4.020 19 C -0.202 4.202 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.153 4.153 23 H 0.073 0.927 24 H 0.042 0.958 25 H 0.022 0.978 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.171 0.829 29 H 0.172 0.828 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.131 0.869 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.121 0.879 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.858 -13.337 -0.045 19.233 hybrid contribution 0.867 1.610 -0.969 2.070 sum 14.726 -11.726 -1.014 18.852 Atomic orbital electron populations 1.69869 1.06005 1.26719 1.50965 1.24864 0.94658 0.98412 0.95089 0.87028 0.80527 0.84732 0.78498 1.20297 1.21198 1.19258 1.21142 0.88308 0.94883 1.49852 0.88932 1.20489 0.97641 0.83442 0.95541 1.62148 1.11204 1.25585 1.25063 1.20649 0.92115 0.85562 1.02499 1.22790 0.99269 0.94442 0.83739 1.21578 1.08502 0.93349 1.00456 1.21622 1.04194 0.99118 0.92307 1.23680 1.11895 0.86276 0.95078 1.96783 1.97436 1.32120 1.61469 1.84113 1.65556 1.18466 1.36514 1.22541 0.97561 0.95286 0.86607 1.23438 0.99066 1.01375 0.96348 1.22167 0.97505 0.98434 0.97176 1.22012 0.99201 0.98176 0.96032 1.22330 0.96953 0.97761 0.98259 0.92689 0.95815 0.97806 0.91910 0.89140 0.82898 0.82757 0.91607 0.93730 0.86909 0.93209 0.92491 0.91433 0.93500 0.87942 0.94005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 13.96 55.43 0.77 -25.45 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.86 20.42 27.36 -169.99 -4.65 15.77 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.07 6.72 56.52 0.38 -5.69 16 7 C -0.50 -13.21 7.87 -34.44 -0.27 -13.48 16 8 H 0.09 2.65 5.20 -52.49 -0.27 2.38 16 9 C 0.15 3.44 3.33 -4.98 -0.02 3.42 16 10 N -0.52 -10.16 4.37 -227.31 -0.99 -11.15 16 11 C 0.12 1.95 5.44 -4.97 -0.03 1.92 16 12 C 0.05 0.80 6.37 -35.63 -0.23 0.57 16 13 C -0.22 -2.97 9.22 -39.70 -0.37 -3.34 16 14 C -0.15 -1.93 10.86 -39.66 -0.43 -2.36 16 15 C -0.04 -0.58 7.80 29.45 0.23 -0.35 16 16 Br 0.04 0.44 34.09 -68.01 -2.32 -1.88 16 17 O -0.15 -2.50 10.65 5.55 0.06 -2.44 16 18 C 0.09 1.61 2.71 -65.87 -0.18 1.43 16 19 C -0.16 -2.97 5.34 -24.55 -0.13 -3.10 16 20 C -0.11 -1.89 6.82 -25.07 -0.17 -2.06 16 21 C -0.12 -2.04 6.80 -25.61 -0.17 -2.22 16 22 C -0.12 -2.21 6.11 -25.61 -0.16 -2.37 16 23 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 24 H 0.02 0.54 7.28 -51.93 -0.38 0.17 16 25 H 0.00 0.10 4.57 -51.93 -0.24 -0.14 16 26 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 27 H 0.09 1.44 7.87 -51.93 -0.41 1.03 16 28 H 0.15 1.80 7.58 -52.49 -0.40 1.40 16 29 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 30 H 0.07 1.08 5.15 -51.93 -0.27 0.81 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.11 2.42 4.53 -51.93 -0.24 2.18 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 2.34 4.83 -51.93 -0.25 2.09 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 315.86 15.07 4.76 4.76 Total: -1.00 -28.17 315.86 -9.37 -37.54 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.99 Total: 2.92 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -2.02 Total: -20.07 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: -0.22 Total: -36.61 kcal Atomic # 8 Polarization: -2.50 SS G_CDS: 0.06 Total: -2.44 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.65 Total: 15.77 kcal Atomic # 35 Polarization: 0.44 SS G_CDS: -2.32 Total: -1.88 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.17 -9.37 -37.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138904987.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.316 kcal (2) G-P(sol) polarization free energy of solvation -28.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds