Wall clock time and date at job start Tue Mar 31 2020 15:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00009 * 2 1 4 4 H 1.48495 * 109.47124 * 269.99501 * 3 2 1 5 5 H 1.48494 * 109.47057 * 29.99830 * 3 2 1 6 6 H 1.48506 * 109.47156 * 149.99867 * 3 2 1 7 7 C 1.37884 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99489 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00305 * 180.02562 * 7 2 1 10 10 N 1.46896 * 109.47039 * 185.91606 * 9 7 2 11 11 C 1.46903 * 110.99634 * 195.42174 * 10 9 7 12 12 C 1.50698 * 109.47062 * 169.99794 * 11 10 9 13 13 C 1.34505 * 125.78188 * 89.99547 * 12 11 10 14 14 C 1.41400 * 106.84870 * 180.02562 * 13 12 11 15 15 C 1.34618 * 106.83372 * 359.97438 * 14 13 12 16 16 Br 1.89098 * 125.79886 * 179.97438 * 15 14 13 17 17 O 1.34307 * 108.40395 * 359.74294 * 15 14 13 18 18 C 1.46895 * 111.00597 * 71.46463 * 10 9 7 19 19 C 1.55239 * 110.46389 * 24.81642 * 18 10 9 20 20 C 1.54890 * 102.58436 * 203.39743 * 19 18 10 21 21 C 1.54267 * 104.31654 * 37.93381 * 20 19 18 22 22 C 1.53877 * 106.59493 * 336.32192 * 21 20 19 23 23 H 0.97003 * 120.00145 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46997 * 65.90731 * 9 7 2 25 25 H 1.09003 * 109.46901 * 305.91193 * 9 7 2 26 26 H 1.09005 * 109.46801 * 289.99716 * 11 10 9 27 27 H 1.09000 * 109.47476 * 49.99210 * 11 10 9 28 28 H 1.07996 * 126.57469 * 359.97438 * 13 12 11 29 29 H 1.07998 * 126.57783 * 180.02562 * 14 13 12 30 30 H 1.09000 * 110.43604 * 147.46889 * 18 10 9 31 31 H 1.08993 * 110.89722 * 85.10927 * 19 18 10 32 32 H 1.08994 * 110.77185 * 321.62394 * 19 18 10 33 33 H 1.09006 * 110.48531 * 279.18478 * 20 19 18 34 34 H 1.09001 * 110.48610 * 156.67903 * 20 19 18 35 35 H 1.08997 * 110.03074 * 95.60401 * 21 20 19 36 36 H 1.09001 * 110.03265 * 216.98890 * 21 20 19 37 37 H 1.09002 * 110.02701 * 119.28524 * 22 21 20 38 38 H 1.08998 * 110.03330 * 240.66083 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5717 -0.1411 11 6 5.4230 -2.6645 0.2165 12 6 5.8271 -4.1141 0.2972 13 6 6.3050 -4.8551 -0.7185 14 6 6.5507 -6.1483 -0.2021 15 6 6.2086 -6.1199 1.0995 16 35 6.3232 -7.5720 2.3053 17 8 5.7767 -4.8836 1.3975 18 6 3.7662 -3.0764 -1.5005 19 6 3.6727 -1.8989 -2.5079 20 6 2.8541 -2.5136 -3.6704 21 6 1.8078 -3.4053 -2.9704 22 6 2.3878 -3.7631 -1.5907 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.7744 0.9393 25 1 3.8752 -0.5915 -0.8312 26 1 6.0222 -2.1621 -0.5430 27 1 5.5866 -2.1873 1.1827 28 1 6.4687 -4.5258 -1.7339 29 1 6.9393 -6.9958 -0.7473 30 1 4.5568 -3.7680 -1.7917 31 1 4.6636 -1.5997 -2.8493 32 1 3.1433 -1.0542 -2.0672 33 1 3.4972 -3.1136 -4.3143 34 1 2.3629 -1.7299 -4.2471 35 1 0.8717 -2.8597 -2.8518 36 1 1.6404 -4.3116 -3.5523 37 1 1.7330 -3.3911 -0.8026 38 1 2.5015 -4.8435 -1.5023 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138904987.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:17 Heat of formation + Delta-G solvation = 23.383184 kcal Electronic energy + Delta-G solvation = -20715.683218 eV Core-core repulsion = 17606.169177 eV Total energy + Delta-G solvation = -3109.514041 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.65297 -40.16392 -36.24463 -34.73136 -34.16271 -33.08493 -31.27731 -29.59093 -29.23532 -28.10454 -25.26852 -23.51382 -22.89563 -21.48611 -21.12608 -20.15622 -19.04030 -17.96724 -17.50895 -16.95195 -16.52584 -16.17376 -15.48827 -15.40756 -14.90873 -14.77887 -14.28803 -13.95440 -13.93713 -13.76330 -13.29052 -13.05729 -12.77592 -12.62051 -12.30053 -12.20246 -11.96023 -11.86678 -11.77424 -11.71941 -11.64606 -11.42063 -11.04346 -10.91504 -10.72157 -10.61285 -9.44220 -8.91366 -8.16324 -6.17124 -0.10884 0.46609 1.36178 1.39462 1.47644 1.49564 2.29312 2.39873 3.16321 3.23862 3.78828 3.91876 3.95327 3.96949 4.22282 4.25560 4.41351 4.55492 4.59005 4.72137 4.75822 4.79423 4.84203 4.85884 4.94413 4.96998 5.06865 5.14631 5.21672 5.32887 5.41830 5.51717 5.54494 5.69473 5.74060 5.95289 6.11976 6.46863 6.70455 6.95808 7.44272 8.98798 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.018853 B = 0.003641 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.838592 B = 7688.681675 C = 8241.582324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.013 3.987 3 Si 0.928 3.072 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.249 1.249 7 C -0.495 4.495 8 H 0.056 0.944 9 C 0.164 3.836 10 N -0.538 5.538 11 C 0.122 3.878 12 C 0.023 3.977 13 C -0.205 4.205 14 C -0.144 4.144 15 C -0.060 4.060 16 Br 0.056 6.944 17 O -0.179 6.179 18 C 0.093 3.907 19 C -0.165 4.165 20 C -0.109 4.109 21 C -0.115 4.115 22 C -0.117 4.117 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.018 0.982 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.178 0.822 29 H 0.185 0.815 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.033 0.967 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.442 -13.431 -2.776 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.184 4.184 3 Si 0.753 3.247 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.172 1.172 7 C -0.534 4.534 8 H 0.074 0.926 9 C 0.038 3.962 10 N -0.262 5.262 11 C -0.006 4.006 12 C -0.030 4.030 13 C -0.225 4.225 14 C -0.166 4.166 15 C -0.188 4.188 16 Br 0.139 6.861 17 O -0.076 6.076 18 C -0.015 4.015 19 C -0.203 4.203 20 C -0.147 4.147 21 C -0.153 4.153 22 C -0.155 4.155 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.035 0.965 26 H 0.107 0.893 27 H 0.104 0.896 28 H 0.196 0.804 29 H 0.202 0.798 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.985 -14.052 -1.679 22.108 hybrid contribution -0.109 1.637 -0.411 1.691 sum 16.875 -12.415 -2.089 21.054 Atomic orbital electron populations 1.70039 1.07992 1.27468 1.53552 1.25661 0.95298 1.02246 0.95162 0.86000 0.79749 0.79936 0.79041 1.19190 1.21752 1.17240 1.21378 0.90682 0.93436 1.47870 0.92635 1.20228 0.94805 0.85555 0.95606 1.61928 1.14086 1.23812 1.26377 1.20649 0.90116 0.86754 1.03049 1.22755 1.01368 0.94412 0.84421 1.21909 1.06561 0.93136 1.00884 1.22023 1.03051 0.99739 0.91761 1.24221 1.12047 0.86052 0.96435 1.96790 1.97359 1.30735 1.61180 1.84075 1.66451 1.19597 1.37492 1.22569 0.97271 0.95651 0.85981 1.23354 1.00278 0.99964 0.96719 1.22171 0.97208 0.98420 0.96881 1.21978 0.98138 0.99309 0.95827 1.22269 0.97259 0.98310 0.97653 0.92937 0.96270 0.96505 0.89298 0.89574 0.80445 0.79808 0.88887 0.90873 0.90758 0.89714 0.92682 0.94843 0.90800 0.92625 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.13 13.96 21.45 0.30 -57.84 16 2 C 0.01 0.73 5.47 84.66 0.46 1.19 16 3 Si 0.93 42.50 27.36 68.60 1.88 44.38 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 6 H -0.25 -10.52 6.72 99.48 0.67 -9.85 16 7 C -0.50 -26.93 7.87 25.60 0.20 -26.73 16 8 H 0.06 3.41 5.20 -2.91 -0.02 3.39 16 9 C 0.16 7.29 3.33 85.56 0.28 7.58 16 10 N -0.54 -20.78 4.37 -873.06 -3.82 -24.60 16 11 C 0.12 3.72 5.44 85.56 0.47 4.19 16 12 C 0.02 0.67 6.37 24.83 0.16 0.83 16 13 C -0.20 -4.81 9.22 22.19 0.20 -4.61 16 14 C -0.14 -3.21 10.86 22.22 0.24 -2.96 16 15 C -0.06 -1.59 7.80 66.99 0.52 -1.06 16 16 Br 0.06 1.19 34.09 -20.37 -0.69 0.50 16 17 O -0.18 -5.76 10.65 -3.06 -0.03 -5.79 16 18 C 0.09 3.22 2.71 46.11 0.12 3.35 16 19 C -0.16 -5.58 5.34 32.01 0.17 -5.41 16 20 C -0.11 -3.32 6.82 31.67 0.22 -3.10 16 21 C -0.11 -3.97 6.80 31.32 0.21 -3.76 16 22 C -0.12 -4.51 6.11 31.32 0.19 -4.32 16 23 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 24 H 0.02 0.87 7.28 -2.39 -0.02 0.85 16 25 H 0.02 0.74 4.57 -2.39 -0.01 0.73 16 26 H 0.09 2.24 8.12 -2.38 -0.02 2.22 16 27 H 0.09 2.65 7.87 -2.39 -0.02 2.63 16 28 H 0.18 3.22 7.58 -2.91 -0.02 3.20 16 29 H 0.18 2.87 8.06 -2.91 -0.02 2.85 16 30 H 0.09 2.70 5.15 -2.39 -0.01 2.69 16 31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.07 3.13 4.53 -2.39 -0.01 3.12 16 33 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.06 2.70 4.83 -2.39 -0.01 2.69 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -64.18 315.86 2.12 -62.06 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 1.03 Total: 16.12 kcal Atomic # 6 Polarization: -38.28 SS G_CDS: 3.46 Total: -34.83 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -3.52 Total: -82.43 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.03 Total: -5.79 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.88 Total: 44.38 kcal Atomic # 35 Polarization: 1.19 SS G_CDS: -0.69 Total: 0.50 kcal Total: -64.18 2.12 -62.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138904987.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.440 kcal (2) G-P(sol) polarization free energy of solvation -64.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds