Wall clock time and date at job start Tue Mar 31 2020 15:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00430 * 2 1 4 4 H 1.48502 * 109.46891 * 270.00181 * 3 2 1 5 5 H 1.48505 * 109.47214 * 30.00007 * 3 2 1 6 6 H 1.48502 * 109.47257 * 149.99932 * 3 2 1 7 7 C 1.37884 * 119.99397 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99489 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00305 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46959 * 185.60809 * 9 7 2 11 11 C 1.46905 * 110.99518 * 196.11318 * 10 9 7 12 12 C 1.50697 * 109.46907 * 169.99958 * 11 10 9 13 13 O 1.34354 * 125.79662 * 270.02384 * 12 11 10 14 14 C 1.34304 * 109.48180 * 179.97438 * 13 12 11 15 15 C 1.34520 * 108.43650 * 0.02562 * 14 13 12 16 16 C 1.34571 * 125.79593 * 89.71598 * 12 11 10 17 17 Br 1.89102 * 126.58803 * 0.02562 * 16 12 11 18 18 C 1.46903 * 111.00022 * 72.16107 * 10 9 7 19 19 C 1.55233 * 110.46813 * 26.82171 * 18 10 9 20 20 C 1.54887 * 102.58841 * 203.39341 * 19 18 10 21 21 C 1.54266 * 104.31145 * 37.93552 * 20 19 18 22 22 C 1.53881 * 106.59806 * 336.32293 * 21 20 19 23 23 H 0.97003 * 119.99473 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47110 * 65.60465 * 9 7 2 25 25 H 1.09001 * 109.46570 * 305.60935 * 9 7 2 26 26 H 1.09003 * 109.46899 * 289.99858 * 11 10 9 27 27 H 1.08995 * 109.47201 * 49.99810 * 11 10 9 28 28 H 1.07994 * 125.77887 * 180.02562 * 14 13 12 29 29 H 1.07992 * 126.57405 * 180.02562 * 15 14 13 30 30 H 1.08994 * 110.42961 * 149.47537 * 18 10 9 31 31 H 1.09010 * 110.89367 * 85.10678 * 19 18 10 32 32 H 1.08993 * 110.76873 * 321.63151 * 19 18 10 33 33 H 1.09004 * 110.48715 * 279.19071 * 20 19 18 34 34 H 1.09001 * 110.49191 * 156.67964 * 20 19 18 35 35 H 1.08997 * 110.03576 * 95.60844 * 21 20 19 36 36 H 1.09001 * 110.03461 * 216.99329 * 21 20 19 37 37 H 1.08997 * 110.03114 * 119.28321 * 22 21 20 38 38 H 1.09004 * 110.02966 * 240.66655 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.1998 -3.6125 0.1342 11 6 1.5721 -4.8872 -0.2391 12 6 2.6269 -5.9599 -0.3265 13 8 3.3282 -6.2847 -1.4255 14 6 4.1785 -7.2831 -1.1354 15 6 4.0267 -7.6080 0.1611 16 6 3.0305 -6.7512 0.6844 17 35 2.3862 -6.7257 2.4621 18 6 2.7486 -3.6747 1.4954 19 6 1.7487 -3.0618 2.5124 20 6 2.6702 -2.6564 3.6894 21 6 3.9529 -2.1367 3.0080 22 6 4.0028 -2.7842 1.6129 23 1 -0.4849 0.8401 0.0004 24 1 0.7013 -2.6014 -0.9362 25 1 0.5514 -2.5148 0.8353 26 1 0.8345 -5.1634 0.5145 27 1 1.0810 -4.7809 -1.2063 28 1 4.8673 -7.7464 -1.8261 29 1 4.5657 -8.3728 0.7002 30 1 2.9852 -4.7043 1.7636 31 1 1.0165 -3.8031 2.8327 32 1 1.2547 -2.1870 2.0895 33 1 2.8937 -3.5211 4.3143 34 1 2.2071 -1.8678 4.2826 35 1 3.9128 -1.0515 2.9147 36 1 4.8285 -2.4293 3.5876 37 1 3.9867 -2.0131 0.8427 38 1 4.9030 -3.3909 1.5149 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143126737.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:15 Heat of formation + Delta-G solvation = 19.664864 kcal Electronic energy + Delta-G solvation = -21116.282429 eV Core-core repulsion = 18006.607149 eV Total energy + Delta-G solvation = -3109.675279 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.66724 -40.11217 -36.22210 -34.93877 -34.34524 -32.01278 -31.12842 -29.52296 -29.00749 -28.16171 -25.58210 -23.74150 -22.71361 -21.45040 -21.10150 -20.13188 -18.72529 -17.94474 -17.50541 -16.81486 -16.57910 -16.29522 -15.43314 -15.33547 -14.97017 -14.72245 -14.22732 -13.95734 -13.80198 -13.67197 -13.29832 -13.06801 -12.78402 -12.69610 -12.48954 -12.36130 -12.01585 -11.88014 -11.77169 -11.69641 -11.33254 -11.21198 -10.94013 -10.63197 -10.47514 -10.24165 -9.48567 -8.89774 -8.10562 -6.15808 0.54819 0.60237 1.41269 1.42173 1.43503 1.53083 2.06065 2.45176 3.22875 3.30032 3.67267 3.84980 3.93657 3.99533 4.17690 4.25114 4.43149 4.53641 4.63617 4.72763 4.76853 4.81049 4.90827 4.94736 4.98912 5.05967 5.17618 5.22939 5.30259 5.34120 5.37348 5.51520 5.58354 5.75583 5.94945 6.02233 6.20400 6.43084 6.65695 7.00299 7.51305 8.99585 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.018183 B = 0.005300 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.524793 B = 5282.125089 C = 5935.272526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.008 3.992 3 Si 0.949 3.051 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.499 4.499 8 H 0.072 0.928 9 C 0.198 3.802 10 N -0.533 5.533 11 C 0.118 3.882 12 C 0.040 3.960 13 O -0.174 6.174 14 C -0.023 4.023 15 C -0.198 4.198 16 C -0.197 4.197 17 Br -0.007 7.007 18 C 0.079 3.921 19 C -0.158 4.158 20 C -0.110 4.110 21 C -0.113 4.113 22 C -0.120 4.120 23 H 0.260 0.740 24 H -0.005 1.005 25 H 0.004 0.996 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.252 0.748 29 H 0.180 0.820 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.085 -16.748 4.569 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.189 4.189 3 Si 0.775 3.225 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.537 4.537 8 H 0.090 0.910 9 C 0.073 3.927 10 N -0.257 5.257 11 C -0.010 4.010 12 C -0.014 4.014 13 O -0.069 6.069 14 C -0.091 4.091 15 C -0.218 4.218 16 C -0.279 4.279 17 Br 0.077 6.923 18 C -0.030 4.030 19 C -0.196 4.196 20 C -0.148 4.148 21 C -0.151 4.151 22 C -0.158 4.158 23 H 0.069 0.931 24 H 0.013 0.987 25 H 0.022 0.978 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.268 0.732 29 H 0.197 0.803 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.060 -16.404 4.597 18.847 hybrid contribution -0.547 0.896 0.082 1.053 sum 7.513 -15.508 4.680 17.856 Atomic orbital electron populations 1.70068 1.07328 1.27282 1.52796 1.25667 0.95449 1.02170 0.95628 0.85686 0.78952 0.79789 0.78098 1.20478 1.21284 1.18903 1.21562 0.93800 0.90317 1.48062 0.91021 1.19711 0.90371 0.88159 0.94483 1.62209 1.36381 1.01347 1.25740 1.20542 0.90919 0.87197 1.02298 1.22232 0.96919 0.97982 0.84308 1.84150 1.42403 1.44880 1.35507 1.24940 0.95840 0.90298 0.97977 1.21918 1.00896 1.03581 0.95434 1.22189 1.06838 1.05833 0.93017 1.96556 1.87003 1.97780 1.10916 1.22936 0.94278 0.99900 0.85858 1.23223 0.98271 1.01288 0.96866 1.22162 0.95556 1.00300 0.96775 1.21997 0.97964 0.99472 0.95694 1.22345 0.96474 0.99184 0.97821 0.93126 0.98726 0.97828 0.91693 0.89618 0.73210 0.80286 0.88604 0.93139 0.90608 0.90885 0.92419 0.93518 0.90620 0.91318 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.81 13.29 21.45 0.28 -54.52 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.95 44.06 29.54 68.60 2.03 46.08 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 6 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.50 -27.04 7.47 25.60 0.19 -26.85 16 8 H 0.07 3.87 4.92 -2.91 -0.01 3.86 16 9 C 0.20 10.08 4.26 85.56 0.36 10.44 16 10 N -0.53 -22.78 4.38 -873.08 -3.83 -26.61 16 11 C 0.12 4.36 5.27 85.56 0.45 4.81 16 12 C 0.04 1.29 6.37 24.84 0.16 1.44 16 13 O -0.17 -5.18 10.65 -2.99 -0.03 -5.21 16 14 C -0.02 -0.48 12.09 66.97 0.81 0.33 16 15 C -0.20 -4.35 10.91 22.20 0.24 -4.11 16 16 C -0.20 -5.58 5.79 22.22 0.13 -5.45 16 17 Br -0.01 -0.19 30.83 -20.37 -0.63 -0.82 16 18 C 0.08 3.02 2.70 46.11 0.12 3.14 16 19 C -0.16 -6.22 5.44 32.01 0.17 -6.04 16 20 C -0.11 -3.67 6.82 31.67 0.22 -3.45 16 21 C -0.11 -3.86 6.80 31.32 0.21 -3.65 16 22 C -0.12 -4.62 6.12 31.32 0.19 -4.43 16 23 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 24 H -0.01 -0.29 7.81 -2.39 -0.02 -0.31 16 25 H 0.00 0.23 5.34 -2.39 -0.01 0.21 16 26 H 0.07 2.32 7.74 -2.39 -0.02 2.30 16 27 H 0.09 3.16 7.86 -2.39 -0.02 3.14 16 28 H 0.25 2.46 8.06 -2.91 -0.02 2.43 16 29 H 0.18 2.87 8.06 -2.91 -0.02 2.84 16 30 H 0.10 3.32 2.82 -2.39 -0.01 3.31 16 31 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.08 3.67 4.61 -2.39 -0.01 3.66 16 33 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.07 3.07 4.63 -2.39 -0.01 3.06 16 38 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -62.51 314.50 2.62 -59.89 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 1.08 Total: 14.06 kcal Atomic # 6 Polarization: -36.61 SS G_CDS: 3.73 Total: -32.88 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -3.54 Total: -81.13 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.03 Total: -5.21 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 35 Polarization: -0.19 SS G_CDS: -0.63 Total: -0.82 kcal Total: -62.51 2.62 -59.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143126737.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.555 kcal (2) G-P(sol) polarization free energy of solvation -62.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds