Wall clock time and date at job start Tue Mar 31 2020 16:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47497 * 2 1 4 4 C 1.53005 * 109.47062 * 240.00086 * 2 1 3 5 5 C 1.53003 * 109.47238 * 119.99933 * 2 1 3 6 6 N 1.46510 * 109.46738 * 60.00013 * 5 2 1 7 7 C 1.39782 * 119.99588 * 180.02562 * 6 5 2 8 8 C 1.38731 * 120.10140 * 0.02562 * 7 6 5 9 9 C 1.38285 * 119.98167 * 179.97438 * 8 7 6 10 10 Br 1.89101 * 119.90489 * 180.02562 * 9 8 7 11 11 C 1.38424 * 120.18338 * 0.02562 * 9 8 7 12 12 C 1.38172 * 120.20068 * 359.68455 * 11 9 8 13 13 C 1.38719 * 120.00811 * 0.59241 * 12 11 9 14 14 O 1.35812 * 120.08442 * 179.70258 * 13 12 11 15 15 C 1.34796 * 117.00210 * 354.39853 * 14 13 12 16 16 H 1.07998 * 119.99723 * 5.06934 * 15 14 13 17 17 C 1.38630 * 119.99666 * 185.06003 * 15 14 13 18 18 N 1.31580 * 119.99550 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00160 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47080 * 89.99547 * 19 17 15 21 21 H 1.48505 * 109.47085 * 209.99293 * 19 17 15 22 22 H 1.48498 * 109.47267 * 329.99401 * 19 17 15 23 23 H 1.08997 * 109.47132 * 300.00228 * 1 2 3 24 24 H 1.09001 * 109.47394 * 60.00039 * 1 2 3 25 25 H 1.09004 * 109.47511 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47453 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46767 * 300.00345 * 3 2 1 28 28 H 1.08996 * 109.46659 * 60.00029 * 3 2 1 29 29 H 1.08999 * 109.46653 * 299.99872 * 4 2 1 30 30 H 1.08994 * 109.46920 * 60.00074 * 4 2 1 31 31 H 1.08999 * 109.47020 * 180.02562 * 4 2 1 32 32 H 1.08996 * 109.47374 * 300.00250 * 5 2 1 33 33 H 1.08994 * 109.47486 * 179.97438 * 5 2 1 34 34 H 0.97000 * 120.00121 * 359.97438 * 6 5 2 35 35 H 1.07998 * 120.00744 * 359.95693 * 8 7 6 36 36 H 1.08007 * 119.89794 * 179.97438 * 11 9 8 37 37 H 1.07995 * 119.99542 * 180.29809 * 12 11 9 38 38 H 0.96999 * 119.99680 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2493 6 7 1.5516 -2.1025 1.2492 7 6 1.8888 -2.9631 2.2978 8 6 2.6854 -2.5112 3.3399 9 6 3.0171 -3.3645 4.3763 10 35 4.1025 -2.7460 5.7960 11 6 2.5569 -4.6700 4.3774 12 6 1.7581 -5.1262 3.3464 13 6 1.4251 -4.2789 2.2997 14 8 0.6451 -4.7276 1.2825 15 6 0.3232 -6.0365 1.2895 16 1 0.6139 -6.6596 2.1224 17 6 -0.3810 -6.5828 0.2277 18 7 -0.6948 -7.8606 0.2343 19 14 -0.8833 -5.5051 -1.2130 20 1 0.1893 -5.5199 -2.2398 21 1 -2.1423 -6.0250 -1.8048 22 1 -1.0964 -4.1138 -0.7398 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2492 30 1 1.6766 -0.2074 -2.1392 31 1 3.1299 -0.7216 -1.2491 32 1 1.6766 -0.2075 2.1392 33 1 3.1299 -0.7217 1.2491 34 1 0.9936 -2.4197 0.5219 35 1 3.0466 -1.4934 3.3415 36 1 2.8191 -5.3326 5.1890 37 1 1.3970 -6.1439 3.3531 38 1 -1.1872 -8.2429 -0.5088 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161639492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:00 Heat of formation + Delta-G solvation = -12.884093 kcal Electronic energy + Delta-G solvation = -20237.445601 eV Core-core repulsion = 17126.358893 eV Total energy + Delta-G solvation = -3111.086708 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.58953 -38.06611 -36.64580 -33.96043 -32.43878 -30.96867 -29.01826 -28.09838 -27.38863 -27.27846 -25.28784 -25.19633 -21.49716 -21.08251 -18.88925 -17.98726 -17.59299 -15.99037 -15.68522 -14.92674 -14.75553 -14.24156 -14.06679 -14.00532 -13.76758 -13.33724 -13.16108 -13.06651 -12.52059 -12.32198 -12.24792 -12.17095 -11.85461 -11.72109 -11.17686 -11.03385 -10.97297 -10.89019 -10.75526 -10.57384 -10.33063 -10.23632 -9.86928 -9.50534 -9.35401 -8.89549 -7.78544 -6.65783 -6.47497 -4.10775 1.94482 2.15381 2.24430 3.14091 3.18079 3.28381 3.88599 4.15094 4.36834 4.63575 4.69216 4.74251 4.86785 5.02865 5.35338 5.49174 5.51905 5.57377 5.68165 5.71705 5.71857 5.75748 5.81225 5.96370 5.98597 6.02345 6.10268 6.22166 6.30489 6.33836 6.45760 6.50356 6.87419 7.11635 7.34925 7.58253 7.85425 7.97958 8.23032 8.87151 9.47449 10.60211 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.009432 B = 0.005562 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.820284 B = 5032.998297 C = 7801.638404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.137 4.137 4 C -0.143 4.143 5 C 0.141 3.859 6 N -0.745 5.745 7 C 0.164 3.836 8 C -0.141 4.141 9 C -0.121 4.121 10 Br -0.089 7.089 11 C -0.091 4.091 12 C -0.188 4.188 13 C 0.115 3.885 14 O -0.218 6.218 15 C -0.383 4.383 16 H 0.107 0.893 17 C 0.063 3.937 18 N -0.877 5.877 19 Si 0.903 3.097 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.261 1.261 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.404 0.596 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.141 0.859 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.616 14.932 3.450 16.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 C -0.195 4.195 4 C -0.201 4.201 5 C 0.016 3.984 6 N -0.380 5.380 7 C 0.062 3.938 8 C -0.167 4.167 9 C -0.201 4.201 10 Br -0.004 7.004 11 C -0.113 4.113 12 C -0.210 4.210 13 C 0.061 3.939 14 O -0.123 6.123 15 C -0.459 4.459 16 H 0.125 0.875 17 C -0.140 4.140 18 N -0.515 5.515 19 Si 0.729 3.271 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.185 1.185 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.240 0.760 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.158 0.842 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.872 15.252 3.679 17.128 hybrid contribution -0.695 -0.144 -1.131 1.335 sum 6.177 15.108 2.548 16.520 Atomic orbital electron populations 1.21883 0.94135 1.02447 1.01599 1.20765 0.96291 0.95667 0.95364 1.21799 1.01044 0.94738 1.01911 1.21884 1.01136 1.00652 0.96400 1.21246 0.97937 0.82500 0.96686 1.44364 1.58852 1.09729 1.25060 1.16911 0.98399 0.87944 0.90513 1.19959 1.03408 0.99289 0.93999 1.20850 1.06572 0.96616 0.96075 1.96490 1.68043 1.89373 1.46538 1.20540 0.98524 0.93460 0.98777 1.20995 1.03696 1.01373 0.94897 1.18721 0.93636 0.91409 0.90137 1.83465 1.58851 1.28105 1.41900 1.20727 1.36161 0.80893 1.08077 0.87535 1.24441 0.96042 0.95572 0.97975 1.69649 1.38170 1.10914 1.32757 0.86222 0.78217 0.81141 0.81519 1.19893 1.20758 1.18502 0.92487 0.92693 0.92132 0.92467 0.92384 0.92478 0.92179 0.92673 0.92452 0.92833 0.92825 0.75952 0.86033 0.86518 0.84158 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.30 37.15 0.31 -1.35 16 2 C -0.08 -0.90 0.78 -154.51 -0.12 -1.02 16 3 C -0.14 -1.22 8.47 37.16 0.31 -0.91 16 4 C -0.14 -1.66 8.30 37.16 0.31 -1.35 16 5 C 0.14 1.84 3.81 -4.03 -0.02 1.82 16 6 N -0.74 -12.44 5.13 -58.48 -0.30 -12.74 16 7 C 0.16 3.13 6.67 -83.57 -0.56 2.58 16 8 C -0.14 -2.45 9.05 -39.38 -0.36 -2.80 16 9 C -0.12 -2.11 6.22 -39.50 -0.25 -2.36 16 10 Br -0.09 -1.31 33.69 -68.01 -2.29 -3.60 16 11 C -0.09 -1.68 9.77 -39.54 -0.39 -2.07 16 12 C -0.19 -3.94 9.16 -39.43 -0.36 -4.31 16 13 C 0.12 2.54 6.67 -38.93 -0.26 2.28 16 14 O -0.22 -5.36 7.83 -0.05 0.00 -5.36 16 15 C -0.38 -10.32 9.95 30.88 0.31 -10.01 16 16 H 0.11 2.95 5.44 -52.49 -0.29 2.66 16 17 C 0.06 1.70 5.49 -17.51 -0.10 1.61 16 18 N -0.88 -24.67 13.96 55.48 0.77 -23.89 16 19 Si 0.90 20.71 28.62 -169.99 -4.86 15.84 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.82 6.86 -51.93 -0.36 0.47 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.81 6.86 -51.93 -0.36 0.46 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.68 7.95 -51.93 -0.41 0.27 16 33 H 0.05 0.68 7.95 -51.93 -0.41 0.27 16 34 H 0.40 7.17 5.53 -40.82 -0.23 6.94 16 35 H 0.12 1.87 6.73 -52.49 -0.35 1.52 16 36 H 0.12 1.92 8.06 -52.48 -0.42 1.50 16 37 H 0.14 3.06 5.64 -52.49 -0.30 2.76 16 38 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 329.52 15.07 4.97 4.97 Total: -1.00 -27.05 329.52 -8.09 -35.14 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.22 Total: 7.52 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -1.16 Total: -17.89 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.47 Total: -36.63 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: 0.00 Total: -5.36 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.86 Total: 15.84 kcal Atomic # 35 Polarization: -1.31 SS G_CDS: -2.29 Total: -3.60 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.05 -8.09 -35.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161639492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.259 kcal (2) G-P(sol) polarization free energy of solvation -27.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds