Wall clock time and date at job start Tue Mar 31 2020 16:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47497 * 2 1 4 4 C 1.53005 * 109.47062 * 240.00086 * 2 1 3 5 5 C 1.53003 * 109.47238 * 119.99933 * 2 1 3 6 6 N 1.46510 * 109.46738 * 60.00013 * 5 2 1 7 7 C 1.39782 * 119.99588 * 180.02562 * 6 5 2 8 8 C 1.38731 * 120.10140 * 0.02562 * 7 6 5 9 9 C 1.38285 * 119.98167 * 179.97438 * 8 7 6 10 10 Br 1.89101 * 119.90489 * 180.02562 * 9 8 7 11 11 C 1.38424 * 120.18338 * 0.02562 * 9 8 7 12 12 C 1.38172 * 120.20068 * 359.68455 * 11 9 8 13 13 C 1.38719 * 120.00811 * 0.59241 * 12 11 9 14 14 O 1.35812 * 120.08442 * 179.70258 * 13 12 11 15 15 C 1.34796 * 117.00210 * 354.39853 * 14 13 12 16 16 H 1.07998 * 119.99723 * 5.06934 * 15 14 13 17 17 C 1.38630 * 119.99666 * 185.06003 * 15 14 13 18 18 N 1.31580 * 119.99550 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00160 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47080 * 89.99547 * 19 17 15 21 21 H 1.48505 * 109.47085 * 209.99293 * 19 17 15 22 22 H 1.48498 * 109.47267 * 329.99401 * 19 17 15 23 23 H 1.08997 * 109.47132 * 300.00228 * 1 2 3 24 24 H 1.09001 * 109.47394 * 60.00039 * 1 2 3 25 25 H 1.09004 * 109.47511 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47453 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46767 * 300.00345 * 3 2 1 28 28 H 1.08996 * 109.46659 * 60.00029 * 3 2 1 29 29 H 1.08999 * 109.46653 * 299.99872 * 4 2 1 30 30 H 1.08994 * 109.46920 * 60.00074 * 4 2 1 31 31 H 1.08999 * 109.47020 * 180.02562 * 4 2 1 32 32 H 1.08996 * 109.47374 * 300.00250 * 5 2 1 33 33 H 1.08994 * 109.47486 * 179.97438 * 5 2 1 34 34 H 0.97000 * 120.00121 * 359.97438 * 6 5 2 35 35 H 1.07998 * 120.00744 * 359.95693 * 8 7 6 36 36 H 1.08007 * 119.89794 * 179.97438 * 11 9 8 37 37 H 1.07995 * 119.99542 * 180.29809 * 12 11 9 38 38 H 0.96999 * 119.99680 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2493 6 7 1.5516 -2.1025 1.2492 7 6 1.8888 -2.9631 2.2978 8 6 2.6854 -2.5112 3.3399 9 6 3.0171 -3.3645 4.3763 10 35 4.1025 -2.7460 5.7960 11 6 2.5569 -4.6700 4.3774 12 6 1.7581 -5.1262 3.3464 13 6 1.4251 -4.2789 2.2997 14 8 0.6451 -4.7276 1.2825 15 6 0.3232 -6.0365 1.2895 16 1 0.6139 -6.6596 2.1224 17 6 -0.3810 -6.5828 0.2277 18 7 -0.6948 -7.8606 0.2343 19 14 -0.8833 -5.5051 -1.2130 20 1 0.1893 -5.5199 -2.2398 21 1 -2.1423 -6.0250 -1.8048 22 1 -1.0964 -4.1138 -0.7398 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2492 30 1 1.6766 -0.2074 -2.1392 31 1 3.1299 -0.7216 -1.2491 32 1 1.6766 -0.2075 2.1392 33 1 3.1299 -0.7217 1.2491 34 1 0.9936 -2.4197 0.5219 35 1 3.0466 -1.4934 3.3415 36 1 2.8191 -5.3326 5.1890 37 1 1.3970 -6.1439 3.3531 38 1 -1.1872 -8.2429 -0.5088 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161639492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:59 Heat of formation + Delta-G solvation = -26.808845 kcal Electronic energy + Delta-G solvation = -20238.049424 eV Core-core repulsion = 17126.358893 eV Total energy + Delta-G solvation = -3111.690531 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.15094 -39.24227 -38.19021 -35.25978 -34.40930 -32.45189 -30.41503 -29.60660 -28.19611 -28.18263 -27.09374 -26.47281 -23.07039 -22.58760 -19.95456 -19.81575 -19.17948 -17.47400 -17.05055 -16.42868 -16.07676 -15.58811 -15.50695 -15.43349 -15.27493 -14.49023 -14.43961 -14.25715 -14.22786 -14.08272 -13.55533 -13.01988 -12.85275 -12.79556 -12.72776 -12.55588 -12.40831 -12.06247 -11.85052 -11.75206 -11.53962 -11.53049 -11.43015 -11.11219 -10.86184 -10.72911 -9.33647 -8.48311 -8.15313 -6.16092 0.38486 0.61604 0.80353 1.30356 1.33772 1.48552 2.26443 2.57252 2.71773 2.98059 3.10360 3.73176 3.86719 3.95387 4.04151 4.24360 4.42649 4.52467 4.62308 4.62564 4.68645 4.84056 4.84168 4.89581 4.89951 4.95178 5.02757 5.06333 5.16198 5.29593 5.32943 5.41445 5.46876 5.53379 5.63046 5.73935 6.03825 6.48139 6.78816 6.86284 7.58545 8.63271 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.009432 B = 0.005562 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.820284 B = 5032.998297 C = 7801.638404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.076 4.076 3 C -0.132 4.132 4 C -0.144 4.144 5 C 0.136 3.864 6 N -0.744 5.744 7 C 0.171 3.829 8 C -0.137 4.137 9 C -0.108 4.108 10 Br -0.049 7.049 11 C -0.102 4.102 12 C -0.192 4.192 13 C 0.074 3.926 14 O -0.237 6.237 15 C -0.390 4.390 16 H 0.082 0.918 17 C 0.010 3.990 18 N -0.924 5.924 19 Si 0.965 3.035 20 H -0.268 1.268 21 H -0.273 1.273 22 H -0.256 1.256 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.033 0.967 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.397 0.603 35 H 0.150 0.850 36 H 0.136 0.864 37 H 0.120 0.880 38 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.982 18.416 3.800 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.076 4.076 3 C -0.189 4.189 4 C -0.201 4.201 5 C 0.012 3.988 6 N -0.377 5.377 7 C 0.067 3.933 8 C -0.162 4.162 9 C -0.188 4.188 10 Br 0.035 6.965 11 C -0.124 4.124 12 C -0.214 4.214 13 C 0.022 3.978 14 O -0.144 6.144 15 C -0.466 4.466 16 H 0.099 0.901 17 C -0.188 4.188 18 N -0.565 5.565 19 Si 0.788 3.212 20 H -0.193 1.193 21 H -0.198 1.198 22 H -0.180 1.180 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.052 0.948 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.233 0.767 35 H 0.168 0.832 36 H 0.154 0.846 37 H 0.138 0.862 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.272 18.790 4.059 20.928 hybrid contribution -0.901 -1.054 -0.967 1.691 sum 7.371 17.736 3.092 19.455 Atomic orbital electron populations 1.21882 0.94575 1.00979 1.02588 1.20762 0.95880 0.96922 0.94067 1.21761 1.01520 0.92782 1.02877 1.21891 1.01418 0.99382 0.97407 1.21524 0.98475 0.80542 0.98219 1.44609 1.58217 1.10887 1.23978 1.17095 0.97657 0.87123 0.91416 1.20279 1.02421 1.00471 0.93078 1.21189 1.04968 0.96047 0.96609 1.96543 1.66644 1.88790 1.44495 1.20690 0.98452 0.94554 0.98673 1.21019 1.04052 1.00570 0.95720 1.19168 0.95204 0.93081 0.90298 1.83418 1.61092 1.26508 1.43401 1.20649 1.36337 0.82015 1.07601 0.90086 1.25212 0.96254 0.96796 1.00549 1.69741 1.40152 1.12524 1.34039 0.85287 0.78176 0.79483 0.78259 1.19282 1.19772 1.18020 0.91974 0.91288 0.94761 0.91693 0.91327 0.91682 0.94731 0.91263 0.91973 0.91838 0.91869 0.76705 0.83206 0.84617 0.86245 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.30 71.98 0.60 -2.43 16 2 C -0.08 -1.49 0.78 -52.18 -0.04 -1.54 16 3 C -0.13 -1.85 8.47 71.98 0.61 -1.24 16 4 C -0.14 -3.05 8.30 71.98 0.60 -2.46 16 5 C 0.14 3.18 3.81 86.38 0.33 3.50 16 6 N -0.74 -24.08 5.13 -338.94 -1.74 -25.81 16 7 C 0.17 6.38 6.67 38.30 0.26 6.63 16 8 C -0.14 -4.41 9.05 22.40 0.20 -4.21 16 9 C -0.11 -3.51 6.22 22.33 0.14 -3.37 16 10 Br -0.05 -1.28 33.69 -20.37 -0.69 -1.97 16 11 C -0.10 -3.67 9.77 22.30 0.22 -3.45 16 12 C -0.19 -8.34 9.16 22.37 0.20 -8.13 16 13 C 0.07 3.36 6.67 22.69 0.15 3.51 16 14 O -0.24 -12.13 7.83 -23.08 -0.18 -12.32 16 15 C -0.39 -22.19 9.95 67.91 0.68 -21.52 16 16 H 0.08 4.87 5.44 -2.91 -0.02 4.85 16 17 C 0.01 0.57 5.49 84.82 0.47 1.03 16 18 N -0.92 -54.41 13.96 21.61 0.30 -54.11 16 19 Si 0.97 43.96 28.62 68.60 1.96 45.92 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 23 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.03 0.90 6.86 -2.38 -0.02 0.88 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.03 0.90 6.86 -2.39 -0.02 0.89 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.39 7.95 -2.39 -0.02 1.37 16 33 H 0.06 1.39 7.95 -2.39 -0.02 1.37 16 34 H 0.40 14.11 5.53 -92.71 -0.51 13.60 16 35 H 0.15 3.98 6.73 -2.91 -0.02 3.96 16 36 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 37 H 0.12 5.62 5.64 -2.91 -0.02 5.60 16 38 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -60.60 329.52 4.62 -55.98 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.56 Total: 25.97 kcal Atomic # 6 Polarization: -38.07 SS G_CDS: 4.41 Total: -33.66 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -1.44 Total: -79.92 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.18 Total: -12.32 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.96 Total: 45.92 kcal Atomic # 35 Polarization: -1.28 SS G_CDS: -0.69 Total: -1.97 kcal Total: -60.60 4.62 -55.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161639492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.169 kcal (2) G-P(sol) polarization free energy of solvation -60.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds