Wall clock time and date at job start Tue Mar 31 2020 14:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.46993 * 2 1 4 4 C 1.46896 * 111.00000 * 296.10972 * 3 2 1 5 5 C 1.50709 * 109.47104 * 294.16605 * 4 3 2 6 6 H 1.08000 * 119.99878 * 355.43508 * 5 4 3 7 7 C 1.37875 * 119.99887 * 175.43347 * 5 4 3 8 8 N 1.31517 * 119.99771 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00236 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47155 * 89.99806 * 9 7 5 11 11 H 1.48497 * 109.47348 * 209.99750 * 9 7 5 12 12 H 1.48500 * 109.47018 * 329.99871 * 9 7 5 13 13 C 1.37891 * 111.00338 * 60.06592 * 3 2 1 14 14 N 1.32710 * 121.26854 * 235.76405 * 13 3 2 15 15 C 1.32412 * 121.41815 * 179.79441 * 14 13 3 16 16 Cl 1.73595 * 118.18086 * 180.23281 * 15 14 13 17 17 N 1.31245 * 123.63593 * 0.48382 * 15 14 13 18 18 C 1.33624 * 120.89878 * 359.77557 * 17 15 14 19 19 C 1.40817 * 123.07664 * 179.97438 * 18 17 15 20 20 Cl 1.73596 * 120.90604 * 359.97438 * 19 18 17 21 21 N 1.31929 * 118.19144 * 180.02562 * 19 18 17 22 22 C 1.32437 * 121.69543 * 359.97438 * 21 19 18 23 23 N 1.31347 * 122.76910 * 0.02698 * 22 21 19 24 24 C 1.33157 * 120.09866 * 359.95770 * 23 22 21 25 25 H 1.09000 * 109.47753 * 305.35100 * 1 2 3 26 26 H 1.09002 * 109.47076 * 65.35464 * 1 2 3 27 27 H 1.09003 * 109.47152 * 185.34593 * 1 2 3 28 28 H 1.09007 * 109.47069 * 119.99583 * 2 1 3 29 29 H 1.09004 * 109.47804 * 239.99581 * 2 1 3 30 30 H 1.09003 * 109.47296 * 54.16245 * 4 3 2 31 31 H 1.08996 * 109.47339 * 174.16742 * 4 3 2 32 32 H 0.96997 * 119.99517 * 180.02562 * 8 7 5 33 33 H 1.08000 * 118.61553 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6260 2.0825 -1.2314 5 6 2.3215 1.4516 -2.4103 6 1 3.0447 0.6651 -2.2530 7 6 2.0343 1.8785 -3.6894 8 7 2.6416 1.3283 -4.7181 9 14 0.7838 3.2393 -3.9614 10 1 1.4723 4.5550 -3.9436 11 1 0.1197 3.0460 -5.2754 12 1 -0.2345 3.1989 -2.8813 13 6 1.5787 2.0651 1.1156 14 7 0.8984 3.1994 1.0067 15 6 0.4702 3.8527 2.0758 16 17 -0.4171 5.3254 1.8357 17 7 0.6834 3.4512 3.3070 18 6 1.3604 2.3260 3.5542 19 6 1.6159 1.8531 4.8558 20 17 1.0536 2.7250 6.2476 21 7 2.2951 0.7299 4.9887 22 6 2.7319 0.0524 3.9379 23 7 2.5234 0.4452 2.7020 24 6 1.8473 1.5671 2.4629 25 1 -0.3634 0.5946 0.8381 26 1 -0.3633 0.4285 -0.9341 27 1 -0.3633 -1.0232 0.0957 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 0.5467 2.0064 -1.3630 31 1 1.9104 3.1324 -1.1611 32 1 2.4398 1.6289 -5.6180 33 1 3.2834 -0.8612 4.1042 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166593734.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:09 Heat of formation + Delta-G solvation = 103.750596 kcal Electronic energy + Delta-G solvation = -23167.788424 eV Core-core repulsion = 19509.815539 eV Total energy + Delta-G solvation = -3657.972885 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 327.035 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.12951 -39.68448 -38.19403 -37.14238 -36.79962 -34.17489 -33.58233 -32.71798 -31.11925 -30.04603 -28.08977 -25.78087 -25.57675 -23.65519 -22.77380 -21.11622 -19.58604 -18.79672 -18.38638 -17.12525 -16.61485 -16.35388 -15.63742 -15.41863 -14.82507 -14.61052 -14.38074 -14.21320 -13.74438 -13.18045 -12.81258 -12.73946 -12.53338 -11.99975 -11.79045 -11.73981 -11.59515 -11.48348 -11.32861 -11.11550 -10.93407 -10.81248 -10.69144 -10.56157 -10.34863 -10.10961 -9.63405 -9.25479 -9.07479 -8.74246 -8.06305 -6.24271 -4.26457 -0.40154 0.07368 1.21724 1.24594 1.29964 2.58140 3.06178 3.21293 3.28895 3.33264 3.46344 3.52942 3.72574 3.84462 4.24002 4.27765 4.43230 4.65021 5.07767 5.19083 5.34310 5.39361 5.57108 5.66490 5.96038 6.03024 6.14131 6.34919 6.46750 6.62851 6.71490 7.10220 7.13797 7.43726 7.54837 7.75446 8.31259 8.78307 9.33786 10.87340 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.015817 B = 0.004631 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.825549 B = 6044.308970 C = 7446.031741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.058 3.942 3 N -0.422 5.422 4 C 0.158 3.842 5 C -0.529 4.529 6 H 0.085 0.915 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.868 3.132 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.260 1.260 13 C 0.459 3.541 14 N -0.548 5.548 15 C 0.420 3.580 16 Cl 0.030 6.970 17 N -0.517 5.517 18 C 0.103 3.897 19 C 0.258 3.742 20 Cl 0.019 6.981 21 N -0.485 5.485 22 C 0.288 3.712 23 N -0.443 5.443 24 C 0.057 3.943 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.029 0.971 31 H 0.047 0.953 32 H 0.267 0.733 33 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.664 -0.080 17.563 18.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.066 4.066 3 N -0.131 5.131 4 C 0.035 3.965 5 C -0.567 4.567 6 H 0.103 0.897 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.694 3.306 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.185 1.185 13 C 0.201 3.799 14 N -0.276 5.276 15 C 0.124 3.876 16 Cl 0.058 6.942 17 N -0.241 5.241 18 C -0.028 4.028 19 C 0.069 3.931 20 Cl 0.048 6.952 21 N -0.202 5.202 22 C 0.000 4.000 23 N -0.157 5.157 24 C -0.085 4.085 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.134 0.866 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -4.199 0.004 17.339 17.840 hybrid contribution -1.200 1.192 -0.203 1.704 sum -5.399 1.196 17.136 18.007 Atomic orbital electron populations 1.22459 0.96890 1.02401 1.02379 1.22513 0.93200 0.84764 1.06105 1.58235 1.47548 1.05212 1.02137 1.20571 0.96592 0.95265 0.84093 1.20876 1.25130 1.22292 0.88403 0.89728 1.24776 0.95766 0.96151 0.95707 1.69867 1.42036 1.41948 0.98862 0.86952 0.82450 0.82998 0.78179 1.19743 1.20949 1.18461 1.21575 0.81321 0.87753 0.89238 1.68244 1.15703 1.11140 1.32517 1.22731 0.90525 0.89830 0.84465 1.98439 1.71297 1.27955 1.96527 1.67835 1.19670 1.14564 1.22028 1.19448 0.97131 0.92785 0.93474 1.22018 0.93200 0.90835 0.87002 1.98447 1.85717 1.72382 1.38675 1.67760 1.09738 1.05743 1.36978 1.25081 0.94950 0.98593 0.81353 1.68401 1.11209 1.12188 1.23886 1.20999 0.99307 0.94011 0.94166 0.94426 0.90639 0.91218 0.88610 0.86625 0.95366 0.93528 0.92258 0.76855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 9.30 37.16 0.35 -2.47 16 2 C 0.06 0.98 5.62 -3.83 -0.02 0.95 16 3 N -0.42 -8.24 4.72 -172.40 -0.81 -9.06 16 4 C 0.16 3.55 2.92 -4.97 -0.01 3.54 16 5 C -0.53 -13.73 8.92 -34.44 -0.31 -14.04 16 6 H 0.08 2.37 7.53 -52.49 -0.40 1.97 16 7 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 8 N -0.89 -25.55 13.96 55.43 0.77 -24.77 16 9 Si 0.87 20.30 27.56 -169.99 -4.69 15.62 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.26 -5.87 6.41 56.52 0.36 -5.51 16 13 C 0.46 8.36 5.07 -153.00 -0.78 7.59 16 14 N -0.55 -10.13 8.74 -9.38 -0.08 -10.21 16 15 C 0.42 6.97 8.13 -92.09 -0.75 6.22 16 16 Cl 0.03 0.42 29.22 -51.86 -1.52 -1.09 16 17 N -0.52 -8.22 10.00 -9.70 -0.10 -8.32 16 18 C 0.10 1.58 6.64 -84.84 -0.56 1.02 16 19 C 0.26 3.48 7.43 -16.54 -0.12 3.36 16 20 Cl 0.02 0.22 28.89 -51.86 -1.50 -1.27 16 21 N -0.48 -6.00 10.39 -11.23 -0.12 -6.11 16 22 C 0.29 3.25 12.23 -91.98 -1.13 2.13 16 23 N -0.44 -6.28 8.20 -11.22 -0.09 -6.38 16 24 C 0.06 0.93 6.54 -82.86 -0.54 0.39 16 25 H 0.04 0.58 7.05 -51.93 -0.37 0.22 16 26 H 0.07 1.29 6.64 -51.93 -0.34 0.95 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.10 1.44 5.83 -51.92 -0.30 1.14 16 29 H 0.12 2.08 6.84 -51.93 -0.36 1.72 16 30 H 0.03 0.64 4.99 -51.93 -0.26 0.38 16 31 H 0.05 1.10 7.22 -51.93 -0.37 0.73 16 32 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.22 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 311.15 15.07 4.69 4.69 Total: -1.00 -28.50 311.15 -9.83 -38.33 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: -2.42 Total: -2.16 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: -3.97 Total: 10.74 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: -0.43 Total: -64.85 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.69 Total: 15.62 kcal Atomic # 17 Polarization: 0.65 SS G_CDS: -3.01 Total: -2.37 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.50 -9.83 -38.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593734.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.078 kcal (2) G-P(sol) polarization free energy of solvation -28.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds