Wall clock time and date at job start Tue Mar 31 2020 14:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.46993 * 2 1 4 4 C 1.46896 * 111.00000 * 296.10972 * 3 2 1 5 5 C 1.50709 * 109.47104 * 294.16605 * 4 3 2 6 6 H 1.08000 * 119.99878 * 355.43508 * 5 4 3 7 7 C 1.37875 * 119.99887 * 175.43347 * 5 4 3 8 8 N 1.31517 * 119.99771 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00236 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47155 * 89.99806 * 9 7 5 11 11 H 1.48497 * 109.47348 * 209.99750 * 9 7 5 12 12 H 1.48500 * 109.47018 * 329.99871 * 9 7 5 13 13 C 1.37891 * 111.00338 * 60.06592 * 3 2 1 14 14 N 1.32710 * 121.26854 * 235.76405 * 13 3 2 15 15 C 1.32412 * 121.41815 * 179.79441 * 14 13 3 16 16 Cl 1.73595 * 118.18086 * 180.23281 * 15 14 13 17 17 N 1.31245 * 123.63593 * 0.48382 * 15 14 13 18 18 C 1.33624 * 120.89878 * 359.77557 * 17 15 14 19 19 C 1.40817 * 123.07664 * 179.97438 * 18 17 15 20 20 Cl 1.73596 * 120.90604 * 359.97438 * 19 18 17 21 21 N 1.31929 * 118.19144 * 180.02562 * 19 18 17 22 22 C 1.32437 * 121.69543 * 359.97438 * 21 19 18 23 23 N 1.31347 * 122.76910 * 0.02698 * 22 21 19 24 24 C 1.33157 * 120.09866 * 359.95770 * 23 22 21 25 25 H 1.09000 * 109.47753 * 305.35100 * 1 2 3 26 26 H 1.09002 * 109.47076 * 65.35464 * 1 2 3 27 27 H 1.09003 * 109.47152 * 185.34593 * 1 2 3 28 28 H 1.09007 * 109.47069 * 119.99583 * 2 1 3 29 29 H 1.09004 * 109.47804 * 239.99581 * 2 1 3 30 30 H 1.09003 * 109.47296 * 54.16245 * 4 3 2 31 31 H 1.08996 * 109.47339 * 174.16742 * 4 3 2 32 32 H 0.96997 * 119.99517 * 180.02562 * 8 7 5 33 33 H 1.08000 * 118.61553 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6260 2.0825 -1.2314 5 6 2.3215 1.4516 -2.4103 6 1 3.0447 0.6651 -2.2530 7 6 2.0343 1.8785 -3.6894 8 7 2.6416 1.3283 -4.7181 9 14 0.7838 3.2393 -3.9614 10 1 1.4723 4.5550 -3.9436 11 1 0.1197 3.0460 -5.2754 12 1 -0.2345 3.1989 -2.8813 13 6 1.5787 2.0651 1.1156 14 7 0.8984 3.1994 1.0067 15 6 0.4702 3.8527 2.0758 16 17 -0.4171 5.3254 1.8357 17 7 0.6834 3.4512 3.3070 18 6 1.3604 2.3260 3.5542 19 6 1.6159 1.8531 4.8558 20 17 1.0536 2.7250 6.2476 21 7 2.2951 0.7299 4.9887 22 6 2.7319 0.0524 3.9379 23 7 2.5234 0.4452 2.7020 24 6 1.8473 1.5671 2.4629 25 1 -0.3634 0.5946 0.8381 26 1 -0.3633 0.4285 -0.9341 27 1 -0.3633 -1.0232 0.0957 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 0.5467 2.0064 -1.3630 31 1 1.9104 3.1324 -1.1611 32 1 2.4398 1.6289 -5.6180 33 1 3.2834 -0.8612 4.1042 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166593734.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:08 Heat of formation + Delta-G solvation = 86.263471 kcal Electronic energy + Delta-G solvation = -23168.546723 eV Core-core repulsion = 19509.815539 eV Total energy + Delta-G solvation = -3658.731184 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 327.035 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.30606 -40.89399 -39.53564 -38.16727 -37.97334 -35.42988 -34.80399 -34.62153 -32.30603 -31.54906 -29.72027 -27.05167 -26.75958 -24.95994 -24.35166 -22.50406 -20.80911 -20.02148 -19.60303 -18.94280 -17.97122 -17.63710 -16.93636 -16.69991 -16.16962 -16.16435 -15.57745 -15.48619 -15.11966 -14.72311 -14.37549 -13.96394 -13.83774 -13.49157 -13.07993 -12.95274 -12.82105 -12.76756 -12.68537 -12.57176 -12.40770 -12.21041 -12.06124 -11.92857 -11.71065 -11.67061 -11.41963 -10.82622 -10.59498 -10.28727 -9.42135 -8.32672 -6.38159 -1.56308 -1.08936 0.02730 0.09885 0.20212 1.35194 1.38105 1.44075 1.47608 1.80013 2.30845 2.31712 2.37746 2.58494 2.70198 3.01557 3.08879 3.27824 3.41488 3.93651 4.08483 4.15698 4.32766 4.56650 4.62704 4.76164 4.83692 4.97438 5.01552 5.19507 5.26943 5.36792 5.62598 5.78878 6.29699 6.39305 6.53099 6.67434 7.25379 8.82207 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.015817 B = 0.004631 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.825549 B = 6044.308970 C = 7446.031741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.060 3.940 3 N -0.439 5.439 4 C 0.176 3.824 5 C -0.524 4.524 6 H 0.053 0.947 7 C 0.029 3.971 8 N -0.935 5.935 9 Si 0.926 3.074 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.247 1.247 13 C 0.446 3.554 14 N -0.567 5.567 15 C 0.405 3.595 16 Cl 0.046 6.954 17 N -0.507 5.507 18 C 0.085 3.915 19 C 0.263 3.737 20 Cl 0.038 6.962 21 N -0.480 5.480 22 C 0.309 3.691 23 N -0.462 5.462 24 C 0.057 3.943 25 H 0.035 0.965 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.028 0.972 31 H 0.035 0.965 32 H 0.269 0.731 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.402 -0.204 20.036 20.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.063 4.063 3 N -0.150 5.150 4 C 0.052 3.948 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.171 4.171 8 N -0.574 5.574 9 Si 0.750 3.250 10 H -0.195 1.195 11 H -0.204 1.204 12 H -0.171 1.171 13 C 0.189 3.811 14 N -0.295 5.295 15 C 0.109 3.891 16 Cl 0.074 6.926 17 N -0.230 5.230 18 C -0.046 4.046 19 C 0.074 3.926 20 Cl 0.066 6.934 21 N -0.197 5.197 22 C 0.022 3.978 23 N -0.177 5.177 24 C -0.084 4.084 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.116 0.884 28 H 0.134 0.866 29 H 0.114 0.886 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -4.946 -0.116 19.864 20.471 hybrid contribution -0.910 1.153 -0.728 1.639 sum -5.856 1.038 19.136 20.039 Atomic orbital electron populations 1.22365 0.95841 1.03951 1.01069 1.22544 0.94078 0.83703 1.06009 1.58230 1.49325 1.05973 1.01459 1.20126 0.95855 0.94429 0.84438 1.21039 1.24144 1.21154 0.89872 0.92905 1.25535 0.97662 0.98401 0.95513 1.69991 1.44082 1.43914 0.99412 0.86014 0.80451 0.80028 0.78479 1.19496 1.20440 1.17106 1.21540 0.82059 0.87911 0.89626 1.68147 1.16072 1.11473 1.33804 1.22868 0.91337 0.90606 0.84298 1.98436 1.70810 1.26816 1.96508 1.67867 1.18968 1.14569 1.21607 1.19660 0.97885 0.92909 0.94184 1.22176 0.92495 0.90954 0.86948 1.98459 1.85408 1.72073 1.37416 1.67964 1.09417 1.05229 1.37116 1.26084 0.92746 0.98835 0.80092 1.68456 1.11972 1.11895 1.25360 1.20841 0.99584 0.94789 0.93192 0.94596 0.92721 0.88395 0.86598 0.88632 0.95434 0.94718 0.92136 0.72274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.24 9.30 71.98 0.67 -4.57 16 2 C 0.06 2.02 5.62 86.30 0.48 2.50 16 3 N -0.44 -17.29 4.72 -699.34 -3.30 -20.60 16 4 C 0.18 8.03 2.92 85.56 0.25 8.28 16 5 C -0.52 -28.04 8.92 25.60 0.23 -27.81 16 6 H 0.05 3.10 7.53 -2.91 -0.02 3.08 16 7 C 0.03 1.57 5.47 84.65 0.46 2.03 16 8 N -0.93 -55.15 13.96 21.45 0.30 -54.85 16 9 Si 0.93 42.23 27.56 68.60 1.89 44.13 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.25 -10.67 6.41 99.48 0.64 -10.03 16 13 C 0.45 16.07 5.07 135.18 0.68 16.76 16 14 N -0.57 -20.73 8.74 -183.59 -1.60 -22.34 16 15 C 0.40 13.06 8.13 180.86 1.47 14.53 16 16 Cl 0.05 1.26 29.22 -2.72 -0.08 1.18 16 17 N -0.51 -15.40 10.00 -184.60 -1.85 -17.24 16 18 C 0.08 2.46 6.64 40.32 0.27 2.73 16 19 C 0.26 6.42 7.43 85.31 0.63 7.05 16 20 Cl 0.04 0.79 28.89 -2.72 -0.08 0.71 16 21 N -0.48 -10.22 10.39 -189.45 -1.97 -12.18 16 22 C 0.31 5.84 12.23 180.82 2.21 8.05 16 23 N -0.46 -12.02 8.20 -189.40 -1.55 -13.58 16 24 C 0.06 1.75 6.54 41.81 0.27 2.03 16 25 H 0.03 1.08 7.05 -2.39 -0.02 1.06 16 26 H 0.05 1.86 6.64 -2.39 -0.02 1.85 16 27 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.12 3.36 5.83 -2.38 -0.01 3.34 16 29 H 0.10 3.55 6.84 -2.38 -0.02 3.53 16 30 H 0.03 1.26 4.99 -2.39 -0.01 1.25 16 31 H 0.03 1.66 7.22 -2.39 -0.02 1.64 16 32 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 33 H 0.26 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -62.45 311.15 0.52 -61.93 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: 1.12 Total: 1.27 kcal Atomic # 6 Polarization: 23.93 SS G_CDS: 7.64 Total: 31.57 kcal Atomic # 7 Polarization: -130.81 SS G_CDS: -9.97 Total: -140.79 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.89 Total: 44.13 kcal Atomic # 17 Polarization: 2.05 SS G_CDS: -0.16 Total: 1.89 kcal Total: -62.45 0.52 -61.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593734.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.194 kcal (2) G-P(sol) polarization free energy of solvation -62.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds