Wall clock time and date at job start Tue Mar 31 2020 15:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.43200 * 119.99644 * 168.45406 * 3 2 1 5 5 N 3.51035 * 140.68936 * 168.45293 * 2 1 3 6 6 C 1.41170 * 120.00202 * 348.45107 * 3 2 1 7 7 C 1.39026 * 119.99977 * 5.16985 * 6 3 2 8 8 H 1.08001 * 120.00286 * 338.42079 * 7 6 3 9 9 C 1.40827 * 120.00364 * 158.42483 * 7 6 3 10 10 N 1.30350 * 119.99530 * 357.03687 * 9 7 6 11 11 Si 1.86800 * 120.00340 * 177.04092 * 9 7 6 12 12 H 1.48500 * 109.47186 * 59.99868 * 11 9 7 13 13 H 1.48504 * 109.47098 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46781 * 299.99498 * 11 9 7 15 15 N 1.38233 * 120.00171 * 185.16186 * 6 3 2 16 16 C 1.40022 * 119.99988 * 120.36504 * 15 6 3 17 17 C 1.38704 * 120.32943 * 350.93303 * 16 15 6 18 18 N 1.32005 * 120.71984 * 179.97438 * 17 16 15 19 19 C 1.32231 * 121.80277 * 0.02562 * 18 17 16 20 20 C 1.39757 * 120.94008 * 0.08147 * 19 18 17 21 21 C 1.39054 * 118.62252 * 359.87128 * 20 19 18 22 22 N 1.39133 * 121.81209 * 179.58525 * 20 19 18 23 23 C 1.33158 * 125.77820 * 22.23604 * 22 20 19 24 24 O 1.21297 * 118.30837 * 179.24973 * 23 22 20 25 25 C 1.50357 * 123.37717 * 359.24646 * 23 22 20 26 26 S 1.76565 * 119.98249 * 180.10559 * 19 18 17 27 27 H 0.97001 * 120.00027 * 185.03259 * 10 9 7 28 28 H 0.97000 * 120.00405 * 300.37595 * 15 6 3 29 29 H 1.08000 * 119.63971 * 359.95583 * 17 16 15 30 30 H 1.08004 * 120.71288 * 180.08679 * 21 20 19 31 31 H 0.97004 * 117.11402 * 202.25497 * 22 20 19 32 32 H 1.09001 * 109.54749 * 204.97504 * 25 23 22 33 33 H 1.09003 * 109.54666 * 84.70283 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2834 1.2161 -0.2482 5 7 3.8521 2.1789 -0.4452 6 6 3.2745 -1.1968 0.2448 7 6 2.5842 -2.3961 0.3790 8 1 1.5372 -2.3899 0.6443 9 6 3.2499 -3.6192 0.1692 10 7 4.4979 -3.6256 -0.2071 11 14 2.3447 -5.2322 0.4301 12 1 1.1768 -5.2980 -0.4847 13 1 3.2608 -6.3657 0.1449 14 1 1.8769 -5.3153 1.8371 15 7 4.6526 -1.1770 0.3508 16 6 5.2703 -1.6100 1.5304 17 6 4.5117 -1.8816 2.6594 18 7 5.0859 -2.2907 3.7753 19 6 6.3947 -2.4572 3.8651 20 6 7.2281 -2.2024 2.7725 21 6 6.6528 -1.7712 1.5823 22 7 8.6079 -2.3633 2.8494 23 6 9.2548 -3.1284 3.7265 24 8 10.4650 -3.1797 3.6624 25 6 8.5624 -3.9318 4.7923 26 16 7.1119 -3.0092 5.3812 27 1 4.9353 -4.4643 -0.4222 28 1 5.1917 -0.8630 -0.3919 29 1 3.4395 -1.7568 2.6251 30 1 7.2649 -1.5658 0.7165 31 1 9.1464 -1.8747 2.2074 32 1 9.2474 -4.1031 5.6226 33 1 8.2428 -4.8881 4.3782 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169084095.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:42 Heat of formation + Delta-G solvation = 67.445814 kcal Electronic energy + Delta-G solvation = -24020.321139 eV Core-core repulsion = 20365.250517 eV Total energy + Delta-G solvation = -3655.070622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.86871 -39.66640 -37.69973 -35.75999 -35.33995 -34.88405 -33.92186 -31.95798 -30.51691 -29.82821 -28.61352 -27.34571 -23.84064 -23.65827 -21.79259 -20.67248 -19.30600 -18.20702 -17.88108 -17.53295 -17.27782 -16.72348 -16.28442 -15.93388 -15.52516 -14.88744 -14.70624 -14.16388 -14.07253 -13.77941 -13.36578 -13.00502 -12.95806 -12.75612 -12.44722 -12.24580 -11.93651 -11.81366 -11.79483 -11.69874 -11.40969 -11.25479 -11.16636 -11.06370 -11.04298 -10.58755 -10.28752 -10.17606 -9.41868 -8.73687 -8.68029 -8.08934 -7.74993 -6.85955 -5.64679 0.86956 1.27968 1.45031 2.01857 2.18255 2.45350 2.61046 2.64998 2.68986 2.78104 3.28263 3.62107 3.72483 3.91962 3.98467 4.00234 4.05833 4.23000 4.67594 4.83791 4.99316 5.00599 5.09334 5.13505 5.39559 5.47102 5.64297 6.01224 6.04710 6.22832 6.31070 6.54415 6.84217 6.96465 7.05073 7.41115 7.55676 7.59973 7.88984 8.10134 8.20729 8.79677 8.97627 9.01068 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013184 B = 0.004434 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.292043 B = 6313.824780 C = 7267.635953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C 0.323 3.677 3 C -0.305 4.305 4 C 0.307 3.693 5 N -0.529 5.529 6 C 0.372 3.628 7 C -0.374 4.374 8 H 0.114 0.886 9 C 0.070 3.930 10 N -0.725 5.725 11 Si 0.925 3.075 12 H -0.252 1.252 13 H -0.269 1.269 14 H -0.247 1.247 15 N -0.641 5.641 16 C 0.259 3.741 17 C 0.042 3.958 18 N -0.393 5.393 19 C 0.003 3.997 20 C 0.153 3.847 21 C -0.176 4.176 22 N -0.648 5.648 23 C 0.528 3.472 24 O -0.526 6.526 25 C -0.136 4.136 26 S -0.052 6.052 27 H 0.303 0.697 28 H 0.405 0.595 29 H 0.173 0.827 30 H 0.139 0.861 31 H 0.412 0.588 32 H 0.148 0.852 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.144 -8.232 4.763 12.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.208 5.208 2 C 0.014 3.986 3 C -0.323 4.323 4 C 0.000 4.000 5 N -0.211 5.211 6 C 0.268 3.732 7 C -0.402 4.402 8 H 0.132 0.868 9 C -0.161 4.161 10 N -0.343 5.343 11 Si 0.746 3.254 12 H -0.175 1.175 13 H -0.193 1.193 14 H -0.171 1.171 15 N -0.260 5.260 16 C 0.148 3.852 17 C -0.127 4.127 18 N -0.102 5.102 19 C -0.248 4.248 20 C 0.049 3.951 21 C -0.210 4.210 22 N -0.291 5.291 23 C 0.313 3.687 24 O -0.403 6.403 25 C -0.287 4.287 26 S 0.184 5.816 27 H 0.115 0.885 28 H 0.242 0.758 29 H 0.190 0.810 30 H 0.157 0.843 31 H 0.250 0.750 32 H 0.166 0.834 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.135 -7.110 6.530 12.004 hybrid contribution 1.217 -0.883 -2.779 3.160 sum 8.352 -7.993 3.751 12.154 Atomic orbital electron populations 1.81091 1.12177 1.08915 1.18605 1.24654 0.91272 0.92137 0.90521 1.12895 0.83109 0.88378 1.47940 1.25154 0.92542 0.91790 0.90523 1.81073 1.09813 1.11060 1.19155 1.16773 0.79945 0.90187 0.86329 1.20362 0.98940 0.89303 1.31600 0.86784 1.26504 0.94744 1.03096 0.91711 1.69489 1.10472 1.32449 1.21923 0.85947 0.80371 0.77274 0.81772 1.17530 1.19337 1.17057 1.41483 1.04942 1.65680 1.13886 1.18275 0.90673 0.89099 0.87188 1.22663 1.01075 1.02380 0.86550 1.67505 1.08142 1.08793 1.25784 1.21916 0.92824 1.13885 0.96149 1.18128 0.82456 0.99973 0.94588 1.20479 0.93921 1.09934 0.96638 1.42944 1.05636 1.45661 1.34863 1.19908 0.87796 0.79547 0.81437 1.90813 1.13517 1.63900 1.72067 1.23824 1.00368 1.02404 1.02079 1.85705 1.24946 1.65234 1.05684 0.88500 0.75821 0.80970 0.84304 0.75033 0.83382 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -11.63 18.54 41.84 0.78 -10.86 16 2 C 0.32 6.74 13.91 -22.47 -0.31 6.43 16 3 C -0.31 -5.93 5.88 -104.93 -0.62 -6.55 16 4 C 0.31 6.29 14.80 -22.49 -0.33 5.95 16 5 N -0.53 -11.44 18.53 41.81 0.77 -10.67 16 6 C 0.37 6.63 4.97 -83.57 -0.42 6.21 16 7 C -0.37 -6.65 7.01 -38.31 -0.27 -6.91 16 8 H 0.11 2.07 7.01 -52.49 -0.37 1.71 16 9 C 0.07 1.17 4.99 -17.20 -0.09 1.08 16 10 N -0.72 -11.84 10.63 55.59 0.59 -11.25 16 11 Si 0.93 13.62 29.57 -169.99 -5.03 8.59 16 12 H -0.25 -3.82 7.11 56.52 0.40 -3.42 16 13 H -0.27 -3.92 7.11 56.52 0.40 -3.52 16 14 H -0.25 -3.75 7.11 56.52 0.40 -3.35 16 15 N -0.64 -10.30 3.36 -8.08 -0.03 -10.33 16 16 C 0.26 4.05 4.88 -83.56 -0.41 3.64 16 17 C 0.04 0.71 9.83 -17.30 -0.17 0.54 16 18 N -0.39 -6.64 10.33 -11.74 -0.12 -6.76 16 19 C 0.00 0.05 6.94 -16.81 -0.12 -0.07 16 20 C 0.15 2.12 6.55 -83.68 -0.55 1.57 16 21 C -0.18 -2.43 9.83 -38.89 -0.38 -2.82 16 22 N -0.65 -7.83 5.09 -10.26 -0.05 -7.89 16 23 C 0.53 6.61 7.60 -11.87 -0.09 6.52 16 24 O -0.53 -7.87 17.77 5.54 0.10 -7.77 16 25 C -0.14 -1.40 6.63 35.84 0.24 -1.16 16 26 S -0.05 -0.66 22.47 -107.50 -2.42 -3.08 16 27 H 0.30 4.63 8.29 -40.82 -0.34 4.30 16 28 H 0.40 6.14 8.82 -40.82 -0.36 5.78 16 29 H 0.17 2.93 6.33 -52.49 -0.33 2.60 16 30 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 31 H 0.41 4.30 8.59 -40.82 -0.35 3.95 16 32 H 0.15 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 324.80 15.07 4.89 4.89 Total: -1.00 -24.15 324.80 -5.83 -29.98 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -1.81 Total: 10.69 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: -3.51 Total: 14.44 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 1.94 Total: -57.75 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.10 Total: -7.77 kcal Atomic # 14 Polarization: 13.62 SS G_CDS: -5.03 Total: 8.59 kcal Atomic # 16 Polarization: -0.66 SS G_CDS: -2.42 Total: -3.08 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -24.15 -5.83 -29.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169084095.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.430 kcal (2) G-P(sol) polarization free energy of solvation -24.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds