Wall clock time and date at job start Tue Mar 31 2020 15:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.43200 * 119.99644 * 168.45406 * 3 2 1 5 5 N 3.51035 * 140.68936 * 168.45293 * 2 1 3 6 6 C 1.41170 * 120.00202 * 348.45107 * 3 2 1 7 7 C 1.39026 * 119.99977 * 5.16985 * 6 3 2 8 8 H 1.08001 * 120.00286 * 338.42079 * 7 6 3 9 9 C 1.40827 * 120.00364 * 158.42483 * 7 6 3 10 10 N 1.30350 * 119.99530 * 357.03687 * 9 7 6 11 11 Si 1.86800 * 120.00340 * 177.04092 * 9 7 6 12 12 H 1.48500 * 109.47186 * 59.99868 * 11 9 7 13 13 H 1.48504 * 109.47098 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46781 * 299.99498 * 11 9 7 15 15 N 1.38233 * 120.00171 * 185.16186 * 6 3 2 16 16 C 1.40022 * 119.99988 * 120.36504 * 15 6 3 17 17 C 1.38704 * 120.32943 * 350.93303 * 16 15 6 18 18 N 1.32005 * 120.71984 * 179.97438 * 17 16 15 19 19 C 1.32231 * 121.80277 * 0.02562 * 18 17 16 20 20 C 1.39757 * 120.94008 * 0.08147 * 19 18 17 21 21 C 1.39054 * 118.62252 * 359.87128 * 20 19 18 22 22 N 1.39133 * 121.81209 * 179.58525 * 20 19 18 23 23 C 1.33158 * 125.77820 * 22.23604 * 22 20 19 24 24 O 1.21297 * 118.30837 * 179.24973 * 23 22 20 25 25 C 1.50357 * 123.37717 * 359.24646 * 23 22 20 26 26 S 1.76565 * 119.98249 * 180.10559 * 19 18 17 27 27 H 0.97001 * 120.00027 * 185.03259 * 10 9 7 28 28 H 0.97000 * 120.00405 * 300.37595 * 15 6 3 29 29 H 1.08000 * 119.63971 * 359.95583 * 17 16 15 30 30 H 1.08004 * 120.71288 * 180.08679 * 21 20 19 31 31 H 0.97004 * 117.11402 * 202.25497 * 22 20 19 32 32 H 1.09001 * 109.54749 * 204.97504 * 25 23 22 33 33 H 1.09003 * 109.54666 * 84.70283 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2834 1.2161 -0.2482 5 7 3.8521 2.1789 -0.4452 6 6 3.2745 -1.1968 0.2448 7 6 2.5842 -2.3961 0.3790 8 1 1.5372 -2.3899 0.6443 9 6 3.2499 -3.6192 0.1692 10 7 4.4979 -3.6256 -0.2071 11 14 2.3447 -5.2322 0.4301 12 1 1.1768 -5.2980 -0.4847 13 1 3.2608 -6.3657 0.1449 14 1 1.8769 -5.3153 1.8371 15 7 4.6526 -1.1770 0.3508 16 6 5.2703 -1.6100 1.5304 17 6 4.5117 -1.8816 2.6594 18 7 5.0859 -2.2907 3.7753 19 6 6.3947 -2.4572 3.8651 20 6 7.2281 -2.2024 2.7725 21 6 6.6528 -1.7712 1.5823 22 7 8.6079 -2.3633 2.8494 23 6 9.2548 -3.1284 3.7265 24 8 10.4650 -3.1797 3.6624 25 6 8.5624 -3.9318 4.7923 26 16 7.1119 -3.0092 5.3812 27 1 4.9353 -4.4643 -0.4222 28 1 5.1917 -0.8630 -0.3919 29 1 3.4395 -1.7568 2.6251 30 1 7.2649 -1.5658 0.7165 31 1 9.1464 -1.8747 2.2074 32 1 9.2474 -4.1031 5.6226 33 1 8.2428 -4.8881 4.3782 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169084095.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:42 Heat of formation + Delta-G solvation = 53.736309 kcal Electronic energy + Delta-G solvation = -24020.915628 eV Core-core repulsion = 20365.250517 eV Total energy + Delta-G solvation = -3655.665111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.96930 -40.81071 -39.02842 -37.16430 -36.62613 -36.53009 -35.24386 -33.28021 -31.57215 -30.88584 -29.86617 -28.80576 -25.02165 -24.83134 -23.11190 -21.79502 -20.70938 -19.34478 -19.12395 -18.73299 -18.48968 -18.02777 -17.40748 -17.08260 -16.74764 -16.07606 -15.82440 -15.34440 -15.13212 -15.02005 -14.57845 -14.35843 -14.26533 -14.07229 -13.88438 -13.52055 -13.38580 -13.28484 -13.25081 -13.11885 -12.79443 -12.66283 -12.39595 -12.28315 -12.20590 -11.91657 -11.55439 -11.28886 -10.58456 -10.04639 -9.77444 -9.37924 -8.98616 -8.05699 -7.14391 -0.22167 0.17677 0.27437 0.72467 1.11194 1.38918 1.47758 1.48462 1.54799 1.70189 2.05074 2.08971 2.26075 2.31571 2.59277 2.71330 2.83352 3.01540 3.42283 3.65339 3.83700 3.88863 3.97534 3.98803 4.22059 4.38277 4.45448 4.63068 4.69239 4.97988 5.26464 5.33560 5.42333 5.67675 5.92338 6.00574 6.17259 6.57479 6.64678 6.80723 6.95847 7.20351 7.36520 7.68798 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013184 B = 0.004434 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.292043 B = 6313.824780 C = 7267.635953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C 0.328 3.672 3 C -0.319 4.319 4 C 0.317 3.683 5 N -0.556 5.556 6 C 0.373 3.627 7 C -0.369 4.369 8 H 0.107 0.893 9 C 0.052 3.948 10 N -0.718 5.718 11 Si 0.969 3.031 12 H -0.258 1.258 13 H -0.259 1.259 14 H -0.255 1.255 15 N -0.640 5.640 16 C 0.249 3.751 17 C 0.026 3.974 18 N -0.413 5.413 19 C -0.008 4.008 20 C 0.158 3.842 21 C -0.166 4.166 22 N -0.641 5.641 23 C 0.528 3.472 24 O -0.550 6.550 25 C -0.126 4.126 26 S -0.056 6.056 27 H 0.312 0.688 28 H 0.409 0.591 29 H 0.161 0.839 30 H 0.164 0.836 31 H 0.420 0.580 32 H 0.174 0.826 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.882 -10.045 5.034 14.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.239 5.239 2 C 0.022 3.978 3 C -0.338 4.338 4 C 0.011 3.989 5 N -0.239 5.239 6 C 0.268 3.732 7 C -0.396 4.396 8 H 0.124 0.876 9 C -0.179 4.179 10 N -0.336 5.336 11 Si 0.789 3.211 12 H -0.182 1.182 13 H -0.183 1.183 14 H -0.179 1.179 15 N -0.259 5.259 16 C 0.139 3.861 17 C -0.142 4.142 18 N -0.122 5.122 19 C -0.260 4.260 20 C 0.053 3.947 21 C -0.199 4.199 22 N -0.285 5.285 23 C 0.315 3.685 24 O -0.428 6.428 25 C -0.277 4.277 26 S 0.180 5.820 27 H 0.125 0.875 28 H 0.247 0.753 29 H 0.178 0.822 30 H 0.181 0.819 31 H 0.259 0.741 32 H 0.192 0.808 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.893 -8.911 6.793 14.305 hybrid contribution 0.816 -0.459 -2.776 2.930 sum 9.710 -9.370 4.017 14.078 Atomic orbital electron populations 1.81076 1.12894 1.09704 1.20261 1.24884 0.91543 0.91471 0.89950 1.12933 0.82477 0.88740 1.49690 1.25240 0.92098 0.91616 0.89955 1.81064 1.10582 1.11600 1.20640 1.16667 0.80826 0.89535 0.86137 1.20486 0.98760 0.90013 1.30390 0.87550 1.26848 0.95291 1.04042 0.91761 1.69460 1.10501 1.33462 1.20160 0.85308 0.79533 0.75413 0.80862 1.18213 1.18281 1.17935 1.41347 1.04166 1.66173 1.14245 1.18289 0.91359 0.89818 0.86650 1.22540 1.00857 1.03535 0.87252 1.67504 1.09161 1.09565 1.26010 1.22354 0.92630 1.13446 0.97529 1.18075 0.83050 0.99380 0.94156 1.20712 0.93338 1.08415 0.97418 1.42897 1.04916 1.45586 1.35085 1.20247 0.87500 0.79259 0.81477 1.90817 1.14530 1.64690 1.72749 1.23978 0.99128 1.02218 1.02340 1.85734 1.25768 1.65795 1.04721 0.87526 0.75304 0.82171 0.81892 0.74078 0.80837 0.83931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -24.98 18.54 19.00 0.35 -24.63 16 2 C 0.33 13.93 13.91 88.33 1.23 15.16 16 3 C -0.32 -12.53 5.88 -20.07 -0.12 -12.65 16 4 C 0.32 13.05 14.80 88.34 1.31 14.35 16 5 N -0.56 -24.12 18.53 19.00 0.35 -23.77 16 6 C 0.37 13.23 4.97 39.04 0.19 13.42 16 7 C -0.37 -12.95 7.01 23.09 0.16 -12.79 16 8 H 0.11 3.88 7.01 -2.91 -0.02 3.86 16 9 C 0.05 1.65 4.99 85.55 0.43 2.08 16 10 N -0.72 -21.96 10.63 21.98 0.23 -21.72 16 11 Si 0.97 26.48 29.57 68.60 2.03 28.51 16 12 H -0.26 -7.34 7.11 99.48 0.71 -6.63 16 13 H -0.26 -6.67 7.11 99.48 0.71 -5.97 16 14 H -0.26 -7.32 7.11 99.48 0.71 -6.62 16 15 N -0.64 -20.00 3.36 -179.48 -0.60 -20.60 16 16 C 0.25 7.51 4.88 38.20 0.19 7.70 16 17 C 0.03 0.86 9.83 84.78 0.83 1.69 16 18 N -0.41 -13.66 10.33 -191.07 -1.97 -15.63 16 19 C -0.01 -0.24 6.94 85.00 0.59 0.35 16 20 C 0.16 4.03 6.55 38.55 0.25 4.29 16 21 C -0.17 -4.22 9.83 22.72 0.22 -4.00 16 22 N -0.64 -13.84 5.09 -305.66 -1.55 -15.40 16 23 C 0.53 11.76 7.60 87.80 0.67 12.42 16 24 O -0.55 -15.05 17.77 -3.08 -0.05 -15.10 16 25 C -0.13 -2.18 6.63 71.13 0.47 -1.71 16 26 S -0.06 -1.33 22.47 -56.49 -1.27 -2.60 16 27 H 0.31 8.69 8.29 -92.71 -0.77 7.92 16 28 H 0.41 11.95 8.82 -92.71 -0.82 11.13 16 29 H 0.16 5.57 6.33 -2.91 -0.02 5.55 16 30 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 31 H 0.42 7.68 8.59 -92.71 -0.80 6.88 16 32 H 0.17 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -50.67 324.80 3.57 -47.09 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -0.36 Total: 23.54 kcal Atomic # 6 Polarization: 33.89 SS G_CDS: 6.43 Total: 40.31 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -3.19 Total: -121.76 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.05 Total: -15.10 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: 2.03 Total: 28.51 kcal Atomic # 16 Polarization: -1.33 SS G_CDS: -1.27 Total: -2.60 kcal Total: -50.67 3.57 -47.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169084095.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.831 kcal (2) G-P(sol) polarization free energy of solvation -50.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds