Wall clock time and date at job start Tue Mar 31 2020 15:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99977 * 2 1 4 4 H 1.48503 * 109.47008 * 240.00256 * 3 2 1 5 5 H 1.48496 * 109.46873 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47134 * 119.99959 * 3 2 1 7 7 C 1.37880 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99755 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46990 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47328 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47060 * 60.00126 * 11 10 9 13 13 N 1.46894 * 109.47515 * 180.02562 * 12 11 10 14 14 C 1.46897 * 111.00430 * 205.00020 * 13 12 11 15 15 C 1.50700 * 109.47458 * 179.97438 * 14 13 12 16 16 C 1.34507 * 125.77795 * 89.99846 * 15 14 13 17 17 C 1.41398 * 106.84564 * 180.02562 * 16 15 14 18 18 C 1.34615 * 106.83552 * 359.97438 * 17 16 15 19 19 Br 1.89105 * 125.79855 * 180.02562 * 18 17 16 20 20 O 1.34309 * 108.40266 * 359.73786 * 18 17 16 21 21 C 1.53006 * 109.47127 * 300.00449 * 12 11 10 22 22 C 1.52997 * 109.47164 * 59.99836 * 21 12 11 23 23 H 0.96991 * 120.00061 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.47284 * 300.00393 * 9 7 2 25 25 H 1.09004 * 109.47368 * 60.00232 * 10 9 7 26 26 H 1.09001 * 109.47372 * 300.00388 * 10 9 7 27 27 H 1.09002 * 109.47398 * 180.02562 * 11 10 9 28 28 H 1.09001 * 109.47194 * 300.00476 * 11 10 9 29 29 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 30 30 H 1.00902 * 110.99862 * 81.04663 * 13 12 11 31 31 H 1.09000 * 109.47445 * 299.99846 * 14 13 12 32 32 H 1.09001 * 109.46918 * 59.99903 * 14 13 12 33 33 H 1.07995 * 126.57416 * 359.97438 * 16 15 14 34 34 H 1.08005 * 126.57620 * 180.02562 * 17 16 15 35 35 H 1.09001 * 109.47002 * 299.99574 * 21 12 11 36 36 H 1.09000 * 109.47050 * 179.97438 * 21 12 11 37 37 H 1.09002 * 109.47045 * 180.02562 * 22 21 12 38 38 H 1.09001 * 109.47375 * 59.99966 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 6 0.6003 -5.0673 -1.2514 13 7 -0.1346 -6.3392 -1.2518 14 6 -0.5020 -6.7345 -2.6180 15 6 -1.2521 -8.0410 -2.5784 16 6 -2.5849 -8.1793 -2.4618 17 6 -2.8548 -9.5673 -2.4664 18 6 -1.6697 -10.1945 -2.5862 19 35 -1.4104 -12.0666 -2.6492 20 8 -0.7034 -9.2646 -2.6597 21 6 -0.3940 -3.9043 -1.2502 22 6 0.3710 -2.5793 -1.2495 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5571 0.8896 25 1 2.8727 -3.6047 0.8877 26 1 2.8714 -3.6039 -0.8922 27 1 2.1887 -5.8156 -0.0029 28 1 0.8541 -5.0455 0.8877 29 1 1.2265 -5.0088 -2.1416 30 1 -0.9496 -6.2860 -0.6592 31 1 -1.1345 -5.9654 -3.0612 32 1 0.4008 -6.8524 -3.2173 33 1 -3.3098 -7.3830 -2.3796 34 1 -3.8256 -10.0345 -2.3895 35 1 -1.0203 -3.9627 -0.3600 36 1 -1.0207 -3.9612 -2.1402 37 1 -0.3373 -1.7508 -1.2482 38 1 0.9974 -2.5209 -2.1397 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328929.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:13 Heat of formation + Delta-G solvation = 1.760852 kcal Electronic energy + Delta-G solvation = -19533.977351 eV Core-core repulsion = 16423.525695 eV Total energy + Delta-G solvation = -3110.451656 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.83300 -38.33487 -35.22580 -33.41390 -32.73058 -31.96836 -30.04837 -29.66484 -27.83016 -25.10719 -23.67481 -22.14704 -21.58512 -20.73274 -20.56053 -18.90583 -17.39333 -16.53387 -16.32300 -15.56864 -14.73691 -14.57450 -14.20933 -14.09372 -13.30747 -13.16930 -13.13441 -13.04434 -12.65196 -12.34024 -11.91463 -11.65668 -11.56393 -11.35152 -11.00986 -10.92850 -10.78298 -10.48968 -10.40167 -10.18255 -10.16345 -9.95919 -9.40953 -9.05427 -8.73644 -8.64548 -8.33268 -8.10352 -5.97584 -4.03590 0.63070 1.24951 2.24304 3.06155 3.31763 3.36461 3.39287 4.30945 4.44601 4.66618 4.67675 5.10168 5.24312 5.30607 5.34822 5.39260 5.54902 5.58740 5.65182 5.87665 6.13008 6.14735 6.22898 6.28357 6.37236 6.59965 6.63017 6.72693 6.80649 6.89092 7.07916 7.18082 7.27610 7.45971 7.52574 7.75296 8.02731 8.15346 8.48396 9.00669 9.61056 11.07839 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.050840 B = 0.002066 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.618191 B =13551.255364 C =13896.974946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.109 4.109 11 C -0.100 4.100 12 C 0.091 3.909 13 N -0.685 5.685 14 C 0.132 3.868 15 C 0.032 3.968 16 C -0.210 4.210 17 C -0.151 4.151 18 C -0.037 4.037 19 Br 0.044 6.956 20 O -0.152 6.152 21 C -0.144 4.144 22 C -0.106 4.106 23 H 0.259 0.741 24 H 0.024 0.976 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.343 0.657 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.055 0.945 36 H 0.039 0.961 37 H 0.091 0.909 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.711 -23.035 -6.876 24.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.147 4.147 11 C -0.139 4.139 12 C -0.018 4.018 13 N -0.315 5.315 14 C 0.003 3.997 15 C -0.021 4.021 16 C -0.231 4.231 17 C -0.173 4.173 18 C -0.166 4.166 19 Br 0.127 6.873 20 O -0.048 6.048 21 C -0.183 4.183 22 C -0.144 4.144 23 H 0.069 0.931 24 H 0.042 0.958 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.161 0.839 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.175 0.825 34 H 0.175 0.825 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.110 0.890 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.866 -24.059 -6.926 25.715 hybrid contribution -0.572 1.894 -0.180 1.986 sum -6.438 -22.166 -7.107 24.151 Atomic orbital electron populations 1.69857 1.05850 1.26375 1.51042 1.24969 0.94836 0.98983 0.95242 0.86713 0.79651 0.83366 0.78590 1.20352 1.21378 1.20328 1.21220 0.92877 0.90813 1.50156 0.92843 1.18653 0.92646 0.91592 0.94123 1.21634 0.98628 0.94228 1.00190 1.21488 0.97875 0.98078 0.96410 1.21694 0.95002 0.85453 0.99618 1.60714 1.28828 1.33949 1.08058 1.20454 0.99132 0.87089 0.93060 1.22695 0.92459 0.84786 1.02137 1.21679 0.95430 0.96616 1.09368 1.21697 0.97618 0.93514 1.04507 1.23779 0.88803 0.88923 1.15064 1.96826 1.98031 0.94512 1.97900 1.84101 1.35906 1.14298 1.70544 1.22307 0.98079 0.98030 0.99904 1.21561 0.99511 0.94474 0.98887 0.93070 0.95760 0.93282 0.93478 0.92954 0.92690 0.90842 0.83896 0.91232 0.89076 0.82543 0.82463 0.92614 0.94236 0.89045 0.94834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.10 11.32 55.43 0.63 -24.47 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -13.86 8.56 -34.44 -0.29 -14.16 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.16 2.10 -91.77 -0.19 0.97 16 10 C -0.11 -2.20 5.14 -26.73 -0.14 -2.34 16 11 C -0.10 -1.73 5.53 -26.73 -0.15 -1.88 16 12 C 0.09 1.44 2.47 -67.71 -0.17 1.27 16 13 N -0.68 -9.38 6.24 -108.00 -0.67 -10.05 16 14 C 0.13 1.56 6.01 -4.98 -0.03 1.53 16 15 C 0.03 0.39 6.83 -35.63 -0.24 0.15 16 16 C -0.21 -2.24 10.81 -39.70 -0.43 -2.67 16 17 C -0.15 -1.55 10.86 -39.66 -0.43 -1.98 16 18 C -0.04 -0.43 7.80 29.45 0.23 -0.20 16 19 Br 0.04 0.40 34.09 -68.01 -2.32 -1.92 16 20 O -0.15 -2.02 10.65 5.57 0.06 -1.96 16 21 C -0.14 -2.55 5.17 -26.73 -0.14 -2.69 16 22 C -0.11 -2.37 4.98 -26.73 -0.13 -2.50 16 23 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 24 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.18 7.80 -51.93 -0.41 0.77 16 30 H 0.34 4.52 8.46 -39.29 -0.33 4.19 16 31 H 0.07 0.76 7.44 -51.93 -0.39 0.37 16 32 H 0.09 1.07 8.06 -51.93 -0.42 0.65 16 33 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 36 H 0.04 0.63 7.45 -51.93 -0.39 0.25 16 37 H 0.09 2.34 6.07 -51.93 -0.31 2.02 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 329.15 15.07 4.96 4.96 Total: -1.00 -27.92 329.15 -10.17 -38.09 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.59 Total: 2.21 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -2.21 Total: -22.94 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: -0.05 Total: -34.52 kcal Atomic # 8 Polarization: -2.02 SS G_CDS: 0.06 Total: -1.96 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 35 Polarization: 0.40 SS G_CDS: -2.32 Total: -1.92 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.92 -10.17 -38.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328929.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.849 kcal (2) G-P(sol) polarization free energy of solvation -27.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds