Wall clock time and date at job start Tue Mar 31 2020 15:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99977 * 2 1 4 4 H 1.48503 * 109.47008 * 240.00256 * 3 2 1 5 5 H 1.48496 * 109.46873 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47134 * 119.99959 * 3 2 1 7 7 C 1.37880 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99755 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46990 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47328 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47060 * 60.00126 * 11 10 9 13 13 N 1.46894 * 109.47515 * 180.02562 * 12 11 10 14 14 C 1.46897 * 111.00430 * 205.00020 * 13 12 11 15 15 C 1.50700 * 109.47458 * 179.97438 * 14 13 12 16 16 C 1.34507 * 125.77795 * 89.99846 * 15 14 13 17 17 C 1.41398 * 106.84564 * 180.02562 * 16 15 14 18 18 C 1.34615 * 106.83552 * 359.97438 * 17 16 15 19 19 Br 1.89105 * 125.79855 * 180.02562 * 18 17 16 20 20 O 1.34309 * 108.40266 * 359.73786 * 18 17 16 21 21 C 1.53006 * 109.47127 * 300.00449 * 12 11 10 22 22 C 1.52997 * 109.47164 * 59.99836 * 21 12 11 23 23 H 0.96991 * 120.00061 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.47284 * 300.00393 * 9 7 2 25 25 H 1.09004 * 109.47368 * 60.00232 * 10 9 7 26 26 H 1.09001 * 109.47372 * 300.00388 * 10 9 7 27 27 H 1.09002 * 109.47398 * 180.02562 * 11 10 9 28 28 H 1.09001 * 109.47194 * 300.00476 * 11 10 9 29 29 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 30 30 H 1.00902 * 110.99862 * 81.04663 * 13 12 11 31 31 H 1.09000 * 109.47445 * 299.99846 * 14 13 12 32 32 H 1.09001 * 109.46918 * 59.99903 * 14 13 12 33 33 H 1.07995 * 126.57416 * 359.97438 * 16 15 14 34 34 H 1.08005 * 126.57620 * 180.02562 * 17 16 15 35 35 H 1.09001 * 109.47002 * 299.99574 * 21 12 11 36 36 H 1.09000 * 109.47050 * 179.97438 * 21 12 11 37 37 H 1.09002 * 109.47045 * 180.02562 * 22 21 12 38 38 H 1.09001 * 109.47375 * 59.99966 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 6 0.6003 -5.0673 -1.2514 13 7 -0.1346 -6.3392 -1.2518 14 6 -0.5020 -6.7345 -2.6180 15 6 -1.2521 -8.0410 -2.5784 16 6 -2.5849 -8.1793 -2.4618 17 6 -2.8548 -9.5673 -2.4664 18 6 -1.6697 -10.1945 -2.5862 19 35 -1.4104 -12.0666 -2.6492 20 8 -0.7034 -9.2646 -2.6597 21 6 -0.3940 -3.9043 -1.2502 22 6 0.3710 -2.5793 -1.2495 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5571 0.8896 25 1 2.8727 -3.6047 0.8877 26 1 2.8714 -3.6039 -0.8922 27 1 2.1887 -5.8156 -0.0029 28 1 0.8541 -5.0455 0.8877 29 1 1.2265 -5.0088 -2.1416 30 1 -0.9496 -6.2860 -0.6592 31 1 -1.1345 -5.9654 -3.0612 32 1 0.4008 -6.8524 -3.2173 33 1 -3.3098 -7.3830 -2.3796 34 1 -3.8256 -10.0345 -2.3895 35 1 -1.0203 -3.9627 -0.3600 36 1 -1.0207 -3.9612 -2.1402 37 1 -0.3373 -1.7508 -1.2482 38 1 0.9974 -2.5209 -2.1397 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328929.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:12 Heat of formation + Delta-G solvation = -13.355155 kcal Electronic energy + Delta-G solvation = -19534.632830 eV Core-core repulsion = 16423.525695 eV Total energy + Delta-G solvation = -3111.107135 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.67678 -39.78065 -36.62425 -34.49202 -34.15477 -33.00488 -31.37189 -31.19757 -29.16135 -26.57707 -25.06931 -23.21934 -22.94227 -22.14267 -21.52562 -20.50892 -18.36799 -18.30982 -17.43617 -16.79886 -16.45140 -15.83702 -15.28020 -15.26912 -14.80033 -14.53434 -14.26244 -14.00493 -13.96542 -13.89531 -13.30616 -13.08391 -12.87837 -12.76266 -12.52526 -12.34359 -12.17486 -12.10026 -11.76574 -11.70072 -11.66043 -11.17060 -10.99433 -10.78067 -10.57060 -10.35520 -9.55902 -9.28119 -8.05438 -6.19119 -0.14563 0.39855 1.42175 1.42682 1.44230 1.50294 2.21983 2.44762 3.19975 3.25655 3.77313 3.92111 3.94424 4.14899 4.24684 4.41959 4.46933 4.53066 4.62169 4.70294 4.79884 4.82708 4.83072 4.86305 5.00140 5.11572 5.25838 5.32227 5.37588 5.41849 5.50192 5.62578 5.70916 5.88812 6.02126 6.07582 6.24857 6.39021 6.45765 6.93771 7.48660 8.97693 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.050840 B = 0.002066 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.618191 B =13551.255364 C =13896.974946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.949 3.051 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.049 0.951 9 C 0.044 3.956 10 C -0.101 4.101 11 C -0.094 4.094 12 C 0.104 3.896 13 N -0.684 5.684 14 C 0.134 3.866 15 C 0.014 3.986 16 C -0.205 4.205 17 C -0.150 4.150 18 C -0.055 4.055 19 Br 0.058 6.942 20 O -0.174 6.174 21 C -0.132 4.132 22 C -0.099 4.099 23 H 0.259 0.741 24 H -0.009 1.009 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.347 0.653 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.028 -24.118 -7.544 26.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.067 0.933 9 C 0.026 3.974 10 C -0.139 4.139 11 C -0.132 4.132 12 C -0.005 4.005 13 N -0.314 5.314 14 C 0.006 3.994 15 C -0.039 4.039 16 C -0.226 4.226 17 C -0.172 4.172 18 C -0.183 4.183 19 Br 0.142 6.858 20 O -0.072 6.072 21 C -0.171 4.171 22 C -0.138 4.138 23 H 0.068 0.932 24 H 0.010 0.990 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.166 0.834 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.193 0.807 34 H 0.199 0.801 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.183 -25.157 -7.596 26.997 hybrid contribution -0.499 2.182 0.040 2.239 sum -6.683 -22.975 -7.555 25.092 Atomic orbital electron populations 1.70000 1.07031 1.26975 1.51594 1.25710 0.95668 1.02190 0.95042 0.85757 0.78503 0.79504 0.78757 1.19687 1.21030 1.19883 1.21633 0.93002 0.92535 1.50171 0.93261 1.18638 0.93121 0.92183 0.93463 1.21495 0.97927 0.94493 1.00031 1.21392 0.98099 0.96579 0.97094 1.21432 0.94460 0.85672 0.98945 1.60625 1.29280 1.32041 1.09499 1.20465 0.99602 0.87534 0.91839 1.22756 0.93026 0.84557 1.03551 1.21990 0.95246 0.97378 1.07942 1.22058 0.98297 0.93418 1.03379 1.24211 0.89065 0.89614 1.15425 1.96829 1.98037 0.93096 1.97871 1.84069 1.36934 1.14958 1.71193 1.22166 0.98167 0.96176 1.00635 1.21344 0.98726 0.96044 0.97658 0.93176 0.99048 0.93758 0.93300 0.91319 0.93089 0.90423 0.83419 0.89853 0.88968 0.80673 0.80121 0.93246 0.92107 0.92512 0.95329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.65 11.32 21.45 0.24 -52.40 16 2 C 0.01 0.68 5.30 84.66 0.45 1.13 16 3 Si 0.95 43.59 29.54 68.60 2.03 45.61 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.54 -29.48 8.56 25.60 0.22 -29.26 16 8 H 0.05 2.68 7.74 -2.91 -0.02 2.65 16 9 C 0.04 2.18 2.10 -11.54 -0.02 2.16 16 10 C -0.10 -4.09 5.14 30.59 0.16 -3.93 16 11 C -0.09 -3.10 5.53 30.59 0.17 -2.93 16 12 C 0.10 3.12 2.47 44.92 0.11 3.23 16 13 N -0.68 -17.21 6.24 -495.59 -3.09 -20.31 16 14 C 0.13 2.88 6.01 85.56 0.51 3.39 16 15 C 0.01 0.30 6.83 24.83 0.17 0.47 16 16 C -0.21 -3.87 10.81 22.19 0.24 -3.63 16 17 C -0.15 -2.72 10.86 22.22 0.24 -2.48 16 18 C -0.06 -1.18 7.80 66.99 0.52 -0.66 16 19 Br 0.06 0.98 34.09 -20.37 -0.69 0.29 16 20 O -0.17 -4.39 10.65 -2.99 -0.03 -4.42 16 21 C -0.13 -4.55 5.17 30.60 0.16 -4.39 16 22 C -0.10 -4.48 4.98 30.59 0.15 -4.33 16 23 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 24 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 25 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.08 2.31 7.80 -2.39 -0.02 2.29 16 30 H 0.35 8.38 8.46 -89.69 -0.76 7.62 16 31 H 0.08 1.57 7.44 -2.39 -0.02 1.56 16 32 H 0.09 1.97 8.06 -2.39 -0.02 1.95 16 33 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 34 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 36 H 0.06 1.83 7.45 -2.39 -0.02 1.81 16 37 H 0.06 2.97 6.07 -2.39 -0.01 2.95 16 38 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -60.41 329.15 1.83 -58.58 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.30 Total: 13.88 kcal Atomic # 6 Polarization: -44.32 SS G_CDS: 3.08 Total: -41.24 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -2.85 Total: -72.71 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.03 Total: -4.42 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 35 Polarization: 0.98 SS G_CDS: -0.69 Total: 0.29 kcal Total: -60.41 1.83 -58.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328929.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.222 kcal (2) G-P(sol) polarization free energy of solvation -60.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds