Wall clock time and date at job start Tue Mar 31 2020 14:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46693 * 2 1 4 4 H 1.08997 * 109.47058 * 303.90885 * 3 2 1 5 5 C 1.50705 * 109.46657 * 183.91422 * 3 2 1 6 6 H 1.08009 * 119.99663 * 245.37002 * 5 3 2 7 7 C 1.37871 * 120.00195 * 65.37314 * 5 3 2 8 8 N 1.31516 * 119.99726 * 193.68222 * 7 5 3 9 9 Si 1.86798 * 119.99985 * 13.68166 * 7 5 3 10 10 H 1.48505 * 109.46981 * 84.71634 * 9 7 5 11 11 H 1.48499 * 109.46877 * 204.71232 * 9 7 5 12 12 H 1.48493 * 109.47195 * 324.71623 * 9 7 5 13 13 N 1.46496 * 109.47055 * 63.91421 * 3 2 1 14 14 S 1.65603 * 120.00052 * 215.31691 * 13 3 2 15 15 O 1.42103 * 106.40090 * 311.32728 * 14 13 3 16 16 O 1.42100 * 106.40422 * 178.41126 * 14 13 3 17 17 C 1.76198 * 107.21542 * 64.86602 * 14 13 3 18 18 C 1.39492 * 119.21150 * 264.67079 * 17 14 13 19 19 C 1.35503 * 121.58449 * 180.02562 * 18 17 14 20 20 C 1.41762 * 119.89731 * 359.97438 * 19 18 17 21 21 N 1.32337 * 131.00425 * 180.02562 * 20 19 18 22 22 S 1.55539 * 109.42054 * 180.02562 * 21 20 19 23 23 N 1.55544 * 100.20379 * 359.97438 * 22 21 20 24 24 C 1.32327 * 109.41948 * 0.02562 * 23 22 21 25 25 C 1.35509 * 119.20693 * 84.69903 * 17 14 13 26 26 H 1.08998 * 109.47565 * 304.71307 * 1 2 3 27 27 H 1.08995 * 109.47483 * 64.71626 * 1 2 3 28 28 H 1.09009 * 109.47050 * 184.71320 * 1 2 3 29 29 H 1.08996 * 109.47221 * 240.00227 * 2 1 3 30 30 H 1.09005 * 109.47464 * 120.00087 * 2 1 3 31 31 H 0.97003 * 119.99573 * 180.02562 * 8 7 5 32 32 H 0.97002 * 120.00445 * 35.32124 * 13 3 2 33 33 H 1.08000 * 119.20714 * 0.02745 * 18 17 14 34 34 H 1.07998 * 120.04986 * 179.97438 * 19 18 17 35 35 H 1.08002 * 120.04817 * 0.02562 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6205 1.9762 -0.8529 5 6 3.5438 1.4437 -0.0970 6 1 4.1377 1.8145 0.7254 7 6 4.1616 0.9715 -1.2355 8 7 5.4522 0.7186 -1.2266 9 14 3.1654 0.6908 -2.7906 10 1 3.0543 1.9656 -3.5441 11 1 3.8423 -0.3260 -3.6352 12 1 1.8080 0.2097 -2.4288 13 7 1.6300 2.1054 1.2405 14 16 1.2257 3.7112 1.2268 15 8 2.2667 4.3811 0.5290 16 8 0.8436 4.0402 2.5553 17 6 -0.2227 3.8758 0.2371 18 6 -0.0922 4.2164 -1.1093 19 6 -1.1734 4.3561 -1.9141 20 6 -2.4750 4.1542 -1.3902 21 7 -3.6642 4.2307 -1.9658 22 16 -4.7678 3.9107 -0.9175 23 7 -3.8876 3.6484 0.3379 24 6 -2.6118 3.7978 0.0197 25 6 -1.4368 3.6692 0.8023 26 1 -0.3634 0.5852 0.8447 27 1 -0.3634 0.4389 -0.9292 28 1 -0.3634 -1.0243 0.0844 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.8868 0.3868 -2.0278 32 1 1.5955 1.6037 2.0700 33 1 0.8943 4.3723 -1.5202 34 1 -1.0436 4.6209 -2.9531 35 1 -1.5092 3.4073 1.8476 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186283041.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:05 Heat of formation + Delta-G solvation = -16.533507 kcal Electronic energy + Delta-G solvation = -23874.803080 eV Core-core repulsion = 20319.242041 eV Total energy + Delta-G solvation = -3555.561039 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.08743 -38.37662 -37.89649 -37.63427 -36.85114 -35.11576 -34.22547 -32.48160 -31.61172 -29.03575 -28.96556 -24.49385 -24.11949 -23.35943 -22.10086 -21.08785 -20.32242 -19.25272 -19.00547 -18.18093 -17.93707 -17.43837 -17.01915 -16.84134 -16.31843 -15.57636 -15.25102 -15.10724 -14.88995 -14.55419 -14.00035 -13.79490 -13.58206 -13.44784 -13.15146 -13.12812 -13.01843 -12.88008 -12.83715 -12.65499 -12.56687 -12.42175 -12.21272 -12.10196 -11.78186 -11.66404 -11.58224 -11.12951 -10.57510 -10.13610 -10.04694 -9.70780 -8.22552 -6.23106 -1.49081 -0.59702 -0.15608 0.22957 0.47944 0.62834 1.40317 1.44924 1.50108 1.95517 2.28138 2.40962 2.78489 2.84708 3.11273 3.30665 3.74140 3.78362 3.87238 4.01174 4.32397 4.35651 4.40198 4.51564 4.61885 4.69126 4.86489 4.88752 4.99068 5.12685 5.17764 5.24343 5.48377 5.59930 5.60508 5.70167 6.29685 6.46101 6.81644 7.39426 8.94747 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.004910 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.928231 B = 5700.700459 C = 6366.921672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.133 4.133 3 C 0.259 3.741 4 H 0.044 0.956 5 C -0.531 4.531 6 H 0.036 0.964 7 C 0.021 3.979 8 N -0.942 5.942 9 Si 0.902 3.098 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.207 1.207 13 N -1.090 6.090 14 S 2.703 3.297 15 O -0.976 6.976 16 O -0.983 6.983 17 C -0.646 4.646 18 C -0.044 4.044 19 C -0.074 4.074 20 C 0.092 3.908 21 N -0.627 5.627 22 S 0.927 5.073 23 N -0.601 5.601 24 C 0.032 3.968 25 C 0.069 3.931 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.264 0.736 32 H 0.422 0.578 33 H 0.154 0.846 34 H 0.166 0.834 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.709 3.596 -0.724 23.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C 0.153 3.847 4 H 0.061 0.939 5 C -0.570 4.570 6 H 0.055 0.945 7 C -0.177 4.177 8 N -0.582 5.582 9 Si 0.725 3.275 10 H -0.194 1.194 11 H -0.216 1.216 12 H -0.129 1.129 13 N -0.851 5.851 14 S 2.792 3.208 15 O -0.965 6.965 16 O -0.973 6.973 17 C -0.739 4.739 18 C -0.069 4.069 19 C -0.099 4.099 20 C -0.063 4.063 21 N -0.480 5.480 22 S 0.971 5.029 23 N -0.457 5.457 24 C -0.123 4.123 25 C 0.042 3.958 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.258 0.742 33 H 0.172 0.828 34 H 0.184 0.816 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -25.379 4.248 -0.823 25.745 hybrid contribution 1.861 -0.439 -0.613 2.008 sum -23.518 3.809 -1.436 23.868 Atomic orbital electron populations 1.21836 0.95061 1.02131 1.01705 1.22168 0.95751 0.96952 1.02402 1.18658 0.92545 0.91630 0.81897 0.93882 1.21589 0.91761 1.41281 1.02387 0.94525 1.25707 0.95674 0.94346 1.01978 1.70098 1.12340 1.45946 1.29792 0.86606 0.82286 0.78810 0.79766 1.19427 1.21550 1.12942 1.55085 1.82590 1.29609 1.17855 1.01432 0.73654 0.72922 0.72757 1.93590 1.54049 1.73451 1.75450 1.93533 1.84481 1.83172 1.36135 1.30488 1.17295 1.15904 1.10220 1.20517 1.00884 0.94676 0.90784 1.20479 0.86562 1.01264 1.01600 1.21448 0.93213 1.00789 0.90844 1.72073 1.07026 1.29120 1.39810 1.78111 1.14481 1.31126 0.79165 1.71982 1.09111 1.26485 1.38085 1.21214 0.90641 1.06360 0.94127 1.20282 0.87011 0.88781 0.99725 0.91729 0.93527 0.91701 0.92098 0.91520 0.92655 0.74214 0.82802 0.81602 0.81276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 9.85 71.98 0.71 -3.39 16 2 C -0.13 -4.72 4.89 30.60 0.15 -4.57 16 3 C 0.26 10.61 1.74 44.25 0.08 10.69 16 4 H 0.04 1.71 6.28 -2.39 -0.02 1.69 16 5 C -0.53 -28.58 9.28 25.60 0.24 -28.34 16 6 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 7 C 0.02 1.19 5.36 84.65 0.45 1.64 16 8 N -0.94 -57.40 13.96 21.45 0.30 -57.10 16 9 Si 0.90 39.77 25.87 68.60 1.77 41.54 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.21 -7.70 5.33 99.48 0.53 -7.17 16 13 N -1.09 -38.28 4.78 -172.52 -0.82 -39.10 16 14 S 2.70 94.25 5.62 -56.49 -0.32 93.93 16 15 O -0.98 -42.26 16.83 -128.00 -2.15 -44.41 16 16 O -0.98 -35.17 17.31 -128.00 -2.22 -37.39 16 17 C -0.65 -18.66 5.74 21.94 0.13 -18.53 16 18 C -0.04 -1.22 9.07 21.94 0.20 -1.02 16 19 C -0.07 -1.81 10.09 22.51 0.23 -1.58 16 20 C 0.09 2.27 7.16 41.97 0.30 2.57 16 21 N -0.63 -13.35 11.44 -72.83 -0.83 -14.18 16 22 S 0.93 13.17 23.60 -56.49 -1.33 11.83 16 23 N -0.60 -12.79 11.44 -72.85 -0.83 -13.63 16 24 C 0.03 0.80 7.16 41.97 0.30 1.10 16 25 C 0.07 1.78 9.51 22.51 0.21 1.99 16 26 H 0.06 1.56 7.59 -2.39 -0.02 1.55 16 27 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.06 2.29 4.70 -2.39 -0.01 2.28 16 30 H 0.07 2.31 8.14 -2.38 -0.02 2.30 16 31 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.42 12.66 8.84 -96.74 -0.86 11.80 16 33 H 0.15 4.36 7.41 -2.91 -0.02 4.34 16 34 H 0.17 3.26 8.06 -2.91 -0.02 3.23 16 35 H 0.17 3.77 7.63 -2.91 -0.02 3.75 16 Total: -1.00 -74.63 321.55 -3.32 -77.95 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.13 Total: 20.00 kcal Atomic # 6 Polarization: -42.44 SS G_CDS: 2.99 Total: -39.45 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -2.19 Total: -124.01 kcal Atomic # 8 Polarization: -77.43 SS G_CDS: -4.37 Total: -81.80 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 1.77 Total: 41.54 kcal Atomic # 16 Polarization: 107.41 SS G_CDS: -1.65 Total: 105.76 kcal Total: -74.63 -3.32 -77.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186283041.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.414 kcal (2) G-P(sol) polarization free energy of solvation -74.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds