Wall clock time and date at job start Tue Mar 31 2020 15:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00430 * 2 1 4 4 H 1.48498 * 109.47277 * 240.00269 * 3 2 1 5 5 H 1.48502 * 109.47229 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47023 * 120.00287 * 3 2 1 7 7 C 1.37884 * 119.99397 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99489 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00305 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46953 * 185.91234 * 9 7 2 11 11 C 1.46900 * 110.99308 * 195.42318 * 10 9 7 12 12 C 1.50703 * 109.46751 * 169.99852 * 11 10 9 13 13 C 1.34514 * 125.78025 * 90.00002 * 12 11 10 14 14 C 1.41430 * 106.84571 * 180.02562 * 13 12 11 15 15 Br 1.89100 * 126.58541 * 180.02562 * 14 13 12 16 16 C 1.34562 * 106.82798 * 0.02562 * 14 13 12 17 17 O 1.34297 * 125.78323 * 269.69539 * 12 11 10 18 18 C 1.46896 * 111.00115 * 71.47220 * 10 9 7 19 19 C 1.55239 * 110.46948 * 24.83086 * 18 10 9 20 20 C 1.54893 * 102.58898 * 203.39340 * 19 18 10 21 21 C 1.54266 * 104.30771 * 37.93461 * 20 19 18 22 22 C 1.53874 * 106.60195 * 336.31906 * 21 20 19 23 23 H 0.97003 * 119.99473 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46997 * 65.90731 * 9 7 2 25 25 H 1.09003 * 109.46901 * 305.91193 * 9 7 2 26 26 H 1.09002 * 109.47619 * 289.99578 * 11 10 9 27 27 H 1.09000 * 109.47378 * 50.00242 * 11 10 9 28 28 H 1.07997 * 126.57718 * 0.02562 * 13 12 11 29 29 H 1.08001 * 125.80100 * 179.97438 * 16 14 13 30 30 H 1.08997 * 110.43412 * 147.47875 * 18 10 9 31 31 H 1.09001 * 110.89447 * 85.10430 * 19 18 10 32 32 H 1.09003 * 110.76959 * 321.62740 * 19 18 10 33 33 H 1.08998 * 110.48377 * 279.18708 * 20 19 18 34 34 H 1.09001 * 110.48665 * 156.67816 * 20 19 18 35 35 H 1.09000 * 110.03156 * 95.61396 * 21 20 19 36 36 H 1.09007 * 110.02656 * 216.98881 * 21 20 19 37 37 H 1.09001 * 110.02950 * 119.28755 * 22 21 20 38 38 H 1.08994 * 110.03348 * 240.67055 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.1991 -3.6122 0.1415 11 6 1.5683 -4.8899 -0.2156 12 6 2.6216 -5.9647 -0.2966 13 6 3.0247 -6.7490 0.7191 14 6 4.0217 -7.6087 0.2024 15 35 4.9671 -8.9398 1.1565 16 6 4.1684 -7.2975 -1.0985 17 8 3.3127 -6.3056 -1.3965 18 6 2.7540 -3.6608 1.5008 19 6 1.7814 -2.9912 2.5085 20 6 2.7232 -2.5895 3.6707 21 6 4.0182 -2.1290 2.9701 22 6 4.0378 -2.8102 1.5905 23 1 -0.4849 0.8401 0.0004 24 1 0.7055 -2.6039 -0.9385 25 1 0.5475 -2.5126 0.8321 26 1 0.8339 -5.1575 0.5441 27 1 1.0730 -4.7931 -1.1817 28 1 2.6575 -6.7264 1.7345 29 1 4.8538 -7.7688 -1.7874 30 1 2.9579 -4.6911 1.7919 31 1 1.0269 -3.7000 2.8501 32 1 1.3141 -2.1105 2.0678 33 1 2.9216 -3.4463 4.3145 34 1 2.2902 -1.7722 4.2475 35 1 4.0136 -1.0454 2.8517 36 1 4.8871 -2.4369 3.5519 37 1 4.0427 -2.0572 0.8024 38 1 4.9167 -3.4487 1.5019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232855170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:20 Heat of formation + Delta-G solvation = 28.983727 kcal Electronic energy + Delta-G solvation = -20709.484101 eV Core-core repulsion = 17600.212918 eV Total energy + Delta-G solvation = -3109.271183 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.57336 -38.56362 -34.72915 -33.51805 -32.75222 -30.92651 -29.60875 -28.05272 -27.23345 -26.95330 -24.05764 -22.05958 -21.46140 -20.31736 -19.67987 -18.56780 -17.23279 -16.53153 -16.12480 -15.24093 -15.10194 -14.51707 -14.15712 -13.83759 -13.52547 -13.08135 -12.92023 -12.81917 -12.45996 -12.16474 -11.68647 -11.58857 -11.30384 -10.97504 -10.92835 -10.71683 -10.51178 -10.37538 -10.32978 -10.29073 -10.12500 -9.58953 -9.39673 -9.32399 -8.92144 -8.45944 -8.37216 -7.27365 -6.05101 -4.05124 1.58490 1.68467 2.42999 3.09446 3.31924 3.36511 3.39500 4.40258 4.69933 4.86103 4.93490 5.29518 5.33298 5.39364 5.45525 5.55824 5.64405 5.78750 5.87682 6.00494 6.02452 6.22234 6.24023 6.30155 6.36013 6.42617 6.53957 6.61293 6.68500 6.95827 6.96298 7.10385 7.13566 7.31481 7.44634 7.89772 8.05399 8.11985 8.47369 9.03239 9.58460 11.05056 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.022653 B = 0.003568 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.725455 B = 7845.430571 C = 8387.142250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.500 4.500 8 H 0.072 0.928 9 C 0.183 3.817 10 N -0.526 5.526 11 C 0.123 3.877 12 C 0.039 3.961 13 C -0.197 4.197 14 C -0.181 4.181 15 Br -0.027 7.027 16 C -0.005 4.005 17 O -0.154 6.154 18 C 0.089 3.911 19 C -0.165 4.165 20 C -0.116 4.116 21 C -0.117 4.117 22 C -0.115 4.115 23 H 0.261 0.739 24 H 0.023 0.977 25 H 0.018 0.982 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.152 0.848 29 H 0.207 0.793 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.122 0.878 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.047 0.953 37 H 0.097 0.903 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.514 -16.374 2.888 18.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.539 4.539 8 H 0.090 0.910 9 C 0.059 3.941 10 N -0.250 5.250 11 C -0.005 4.005 12 C -0.012 4.012 13 C -0.218 4.218 14 C -0.262 4.262 15 Br 0.057 6.943 16 C -0.076 4.076 17 O -0.048 6.048 18 C -0.020 4.020 19 C -0.203 4.203 20 C -0.154 4.154 21 C -0.155 4.155 22 C -0.153 4.153 23 H 0.071 0.929 24 H 0.041 0.959 25 H 0.036 0.964 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.170 0.830 29 H 0.224 0.776 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.140 0.860 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.115 0.885 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.031 -16.498 2.604 18.532 hybrid contribution -0.272 0.877 0.587 1.090 sum 7.759 -15.621 3.191 17.731 Atomic orbital electron populations 1.69937 1.05944 1.26845 1.51144 1.24942 0.94780 0.99057 0.95606 0.86663 0.79569 0.83140 0.78730 1.20232 1.21465 1.20182 1.21232 0.93730 0.89371 1.49536 0.91020 1.20046 0.90287 0.87113 0.96629 1.62305 1.37126 1.01165 1.24439 1.20589 0.89960 0.87490 1.02452 1.22696 0.96839 0.98135 0.83564 1.21344 1.00877 0.98937 1.00688 1.22070 1.05127 1.03139 0.95859 1.96600 1.73699 1.49274 1.74738 1.23897 0.96263 0.91924 0.95548 1.84163 1.41541 1.42973 1.36169 1.22486 0.94788 0.97445 0.87242 1.23477 0.97537 1.03317 0.95938 1.22180 0.96284 0.99524 0.97420 1.22024 0.96554 1.00625 0.96311 1.22322 0.95679 0.99536 0.97774 0.92912 0.95868 0.96423 0.92161 0.89186 0.83026 0.77641 0.91971 0.93826 0.85960 0.93267 0.92567 0.92011 0.93438 0.88511 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.21 13.29 55.43 0.74 -24.48 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.50 -12.91 7.32 -34.44 -0.25 -13.16 16 8 H 0.07 1.85 4.95 -52.49 -0.26 1.59 16 9 C 0.18 4.35 4.26 -4.98 -0.02 4.32 16 10 N -0.53 -10.58 4.38 -227.31 -0.99 -11.57 16 11 C 0.12 2.09 5.44 -4.97 -0.03 2.06 16 12 C 0.04 0.62 6.37 -35.62 -0.23 0.39 16 13 C -0.20 -2.86 9.22 -39.68 -0.37 -3.22 16 14 C -0.18 -2.41 6.61 -39.67 -0.26 -2.67 16 15 Br -0.03 -0.31 34.10 -68.01 -2.32 -2.63 16 16 C 0.00 -0.06 12.06 29.43 0.35 0.29 16 17 O -0.15 -2.38 10.65 5.59 0.06 -2.32 16 18 C 0.09 1.66 2.71 -65.87 -0.18 1.48 16 19 C -0.16 -3.11 5.34 -24.55 -0.13 -3.24 16 20 C -0.12 -1.95 6.82 -25.07 -0.17 -2.12 16 21 C -0.12 -2.02 6.80 -25.61 -0.17 -2.19 16 22 C -0.12 -2.17 6.11 -25.61 -0.16 -2.32 16 23 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.02 0.59 7.82 -51.93 -0.41 0.19 16 25 H 0.02 0.45 5.47 -51.93 -0.28 0.17 16 26 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 27 H 0.09 1.50 7.87 -51.93 -0.41 1.10 16 28 H 0.15 2.07 7.59 -52.49 -0.40 1.67 16 29 H 0.21 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.06 1.08 5.15 -51.93 -0.27 0.81 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.12 2.79 4.53 -51.93 -0.24 2.56 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 2.07 4.83 -51.93 -0.25 1.82 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 319.33 15.07 4.81 4.81 Total: -1.00 -27.24 319.33 -9.46 -36.70 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.03 Total: 2.55 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -1.71 Total: -18.94 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.26 Total: -36.05 kcal Atomic # 8 Polarization: -2.38 SS G_CDS: 0.06 Total: -2.32 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -2.32 Total: -2.63 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.24 -9.46 -36.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232855170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.685 kcal (2) G-P(sol) polarization free energy of solvation -27.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds