Wall clock time and date at job start Tue Mar 31 2020 15:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00430 * 2 1 4 4 H 1.48498 * 109.47277 * 240.00269 * 3 2 1 5 5 H 1.48502 * 109.47229 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47023 * 120.00287 * 3 2 1 7 7 C 1.37884 * 119.99397 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99489 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00305 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46953 * 185.91234 * 9 7 2 11 11 C 1.46900 * 110.99308 * 195.42318 * 10 9 7 12 12 C 1.50703 * 109.46751 * 169.99852 * 11 10 9 13 13 C 1.34514 * 125.78025 * 90.00002 * 12 11 10 14 14 C 1.41430 * 106.84571 * 180.02562 * 13 12 11 15 15 Br 1.89100 * 126.58541 * 180.02562 * 14 13 12 16 16 C 1.34562 * 106.82798 * 0.02562 * 14 13 12 17 17 O 1.34297 * 125.78323 * 269.69539 * 12 11 10 18 18 C 1.46896 * 111.00115 * 71.47220 * 10 9 7 19 19 C 1.55239 * 110.46948 * 24.83086 * 18 10 9 20 20 C 1.54893 * 102.58898 * 203.39340 * 19 18 10 21 21 C 1.54266 * 104.30771 * 37.93461 * 20 19 18 22 22 C 1.53874 * 106.60195 * 336.31906 * 21 20 19 23 23 H 0.97003 * 119.99473 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46997 * 65.90731 * 9 7 2 25 25 H 1.09003 * 109.46901 * 305.91193 * 9 7 2 26 26 H 1.09002 * 109.47619 * 289.99578 * 11 10 9 27 27 H 1.09000 * 109.47378 * 50.00242 * 11 10 9 28 28 H 1.07997 * 126.57718 * 0.02562 * 13 12 11 29 29 H 1.08001 * 125.80100 * 179.97438 * 16 14 13 30 30 H 1.08997 * 110.43412 * 147.47875 * 18 10 9 31 31 H 1.09001 * 110.89447 * 85.10430 * 19 18 10 32 32 H 1.09003 * 110.76959 * 321.62740 * 19 18 10 33 33 H 1.08998 * 110.48377 * 279.18708 * 20 19 18 34 34 H 1.09001 * 110.48665 * 156.67816 * 20 19 18 35 35 H 1.09000 * 110.03156 * 95.61396 * 21 20 19 36 36 H 1.09007 * 110.02656 * 216.98881 * 21 20 19 37 37 H 1.09001 * 110.02950 * 119.28755 * 22 21 20 38 38 H 1.08994 * 110.03348 * 240.67055 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.1991 -3.6122 0.1415 11 6 1.5683 -4.8899 -0.2156 12 6 2.6216 -5.9647 -0.2966 13 6 3.0247 -6.7490 0.7191 14 6 4.0217 -7.6087 0.2024 15 35 4.9671 -8.9398 1.1565 16 6 4.1684 -7.2975 -1.0985 17 8 3.3127 -6.3056 -1.3965 18 6 2.7540 -3.6608 1.5008 19 6 1.7814 -2.9912 2.5085 20 6 2.7232 -2.5895 3.6707 21 6 4.0182 -2.1290 2.9701 22 6 4.0378 -2.8102 1.5905 23 1 -0.4849 0.8401 0.0004 24 1 0.7055 -2.6039 -0.9385 25 1 0.5475 -2.5126 0.8321 26 1 0.8339 -5.1575 0.5441 27 1 1.0730 -4.7931 -1.1817 28 1 2.6575 -6.7264 1.7345 29 1 4.8538 -7.7688 -1.7874 30 1 2.9579 -4.6911 1.7919 31 1 1.0269 -3.7000 2.8501 32 1 1.3141 -2.1105 2.0678 33 1 2.9216 -3.4463 4.3145 34 1 2.2902 -1.7722 4.2475 35 1 4.0136 -1.0454 2.8517 36 1 4.8871 -2.4369 3.5519 37 1 4.0427 -2.0572 0.8024 38 1 4.9167 -3.4487 1.5019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232855170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:20 Heat of formation + Delta-G solvation = 14.495108 kcal Electronic energy + Delta-G solvation = -20710.112375 eV Core-core repulsion = 17600.212918 eV Total energy + Delta-G solvation = -3109.899457 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.67946 -40.09742 -36.20067 -34.80354 -34.47364 -32.19940 -30.74426 -29.52883 -28.98683 -28.31390 -25.63521 -23.75707 -22.60247 -21.48482 -21.10679 -20.08313 -18.70287 -18.03677 -17.42360 -16.84551 -16.58996 -16.24983 -15.42708 -15.30963 -14.86992 -14.62624 -14.20335 -14.02670 -13.88240 -13.70358 -13.16803 -13.00450 -12.74852 -12.67808 -12.56168 -12.38022 -12.06078 -11.90368 -11.77467 -11.68056 -11.33555 -11.22108 -10.95670 -10.71748 -10.48881 -10.39392 -9.49378 -8.89427 -8.10403 -6.15530 0.60258 0.61379 1.32560 1.43662 1.44429 1.51421 2.01939 2.45483 3.23149 3.31862 3.65351 3.89558 3.92906 3.97783 4.21619 4.26363 4.33823 4.47611 4.58918 4.70768 4.75532 4.80479 4.90643 4.97349 4.99084 5.05421 5.17976 5.22462 5.24212 5.30328 5.34528 5.51925 5.57888 5.76375 5.93801 6.01772 6.20313 6.42909 6.67419 7.00464 7.51706 8.99306 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.022653 B = 0.003568 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.725455 B = 7845.430571 C = 8387.142250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.010 3.990 3 Si 0.946 3.054 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.500 4.500 8 H 0.070 0.930 9 C 0.200 3.800 10 N -0.537 5.537 11 C 0.125 3.875 12 C 0.014 3.986 13 C -0.188 4.188 14 C -0.198 4.198 15 Br -0.007 7.007 16 C 0.009 3.991 17 O -0.172 6.172 18 C 0.093 3.907 19 C -0.164 4.164 20 C -0.111 4.111 21 C -0.115 4.115 22 C -0.115 4.115 23 H 0.260 0.740 24 H -0.005 1.005 25 H 0.004 0.996 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.160 0.840 29 H 0.244 0.756 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.411 -17.869 3.860 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.188 4.188 3 Si 0.773 3.227 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.538 4.538 8 H 0.088 0.912 9 C 0.074 3.926 10 N -0.260 5.260 11 C -0.003 4.003 12 C -0.037 4.037 13 C -0.209 4.209 14 C -0.278 4.278 15 Br 0.077 6.923 16 C -0.061 4.061 17 O -0.067 6.067 18 C -0.016 4.016 19 C -0.202 4.202 20 C -0.149 4.149 21 C -0.153 4.153 22 C -0.153 4.153 23 H 0.069 0.931 24 H 0.013 0.987 25 H 0.022 0.978 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.178 0.822 29 H 0.260 0.740 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.943 -18.005 3.582 20.878 hybrid contribution -0.806 1.199 0.268 1.470 sum 9.137 -16.806 3.849 19.512 Atomic orbital electron populations 1.70053 1.07276 1.27345 1.52709 1.25637 0.95417 1.02078 0.95632 0.85776 0.78449 0.79609 0.78895 1.19945 1.21414 1.19390 1.21514 0.93773 0.90393 1.48150 0.91203 1.19686 0.90274 0.88104 0.94511 1.62163 1.36440 1.01675 1.25761 1.20504 0.90784 0.86603 1.02361 1.22332 0.97935 0.98982 0.84405 1.21489 1.00476 0.98341 1.00620 1.22234 1.05403 1.03824 0.96381 1.96621 1.73094 1.48251 1.74372 1.24678 0.95052 0.90279 0.96123 1.84144 1.42210 1.44023 1.36368 1.22532 0.94435 0.98364 0.86241 1.23329 0.98194 1.01805 0.96908 1.22177 0.95268 1.00602 0.96810 1.22012 0.98000 0.99451 0.95807 1.22276 0.96309 0.99009 0.97739 0.93120 0.98658 0.97847 0.91107 0.89906 0.82224 0.74033 0.90039 0.92764 0.90223 0.90461 0.92594 0.93716 0.90586 0.91646 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.92 13.29 21.45 0.28 -53.63 16 2 C 0.01 0.55 5.46 84.66 0.46 1.01 16 3 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.50 -26.53 7.32 25.60 0.19 -26.34 16 8 H 0.07 3.70 4.95 -2.91 -0.01 3.69 16 9 C 0.20 9.84 4.26 85.56 0.36 10.20 16 10 N -0.54 -21.84 4.38 -873.06 -3.82 -25.66 16 11 C 0.13 4.27 5.44 85.56 0.47 4.74 16 12 C 0.01 0.44 6.37 24.83 0.16 0.60 16 13 C -0.19 -5.05 9.22 22.20 0.20 -4.85 16 14 C -0.20 -4.73 6.61 22.21 0.15 -4.58 16 15 Br -0.01 -0.14 34.10 -20.37 -0.69 -0.84 16 16 C 0.01 0.21 12.06 66.98 0.81 1.02 16 17 O -0.17 -5.08 10.65 -2.92 -0.03 -5.11 16 18 C 0.09 3.36 2.71 46.11 0.12 3.49 16 19 C -0.16 -6.13 5.34 32.01 0.17 -5.96 16 20 C -0.11 -3.50 6.82 31.67 0.22 -3.28 16 21 C -0.11 -3.74 6.80 31.32 0.21 -3.53 16 22 C -0.12 -4.21 6.11 31.32 0.19 -4.02 16 23 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 24 H 0.00 -0.25 7.82 -2.39 -0.02 -0.27 16 25 H 0.00 0.21 5.47 -2.39 -0.01 0.19 16 26 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 27 H 0.08 2.87 7.87 -2.39 -0.02 2.86 16 28 H 0.16 3.94 7.59 -2.91 -0.02 3.92 16 29 H 0.24 3.32 8.06 -2.91 -0.02 3.30 16 30 H 0.08 2.65 5.15 -2.39 -0.01 2.64 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.08 3.73 4.53 -2.39 -0.01 3.72 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.07 2.81 4.83 -2.39 -0.01 2.80 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -59.38 319.33 2.55 -56.83 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 1.07 Total: 14.39 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 3.71 Total: -31.50 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -3.54 Total: -79.30 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.03 Total: -5.11 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -0.69 Total: -0.84 kcal Total: -59.38 2.55 -56.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232855170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.326 kcal (2) G-P(sol) polarization free energy of solvation -59.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds