Wall clock time and date at job start Tue Mar 31 2020 15:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30764 * 1 3 3 Si 1.86800 * 119.99647 * 2 1 4 4 H 1.48503 * 109.47249 * 269.99275 * 3 2 1 5 5 H 1.48491 * 109.47549 * 29.99812 * 3 2 1 6 6 H 1.48504 * 109.47097 * 149.99735 * 3 2 1 7 7 C 1.40087 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00064 * 166.43037 * 7 2 1 9 9 C 1.40835 * 120.00426 * 346.43305 * 7 2 1 10 10 C 1.40382 * 120.41132 * 331.88171 * 9 7 2 11 11 C 1.40014 * 117.96656 * 180.29238 * 10 9 7 12 12 C 1.40786 * 121.40386 * 180.34073 * 11 10 9 13 13 C 1.36124 * 119.47483 * 179.70095 * 12 11 10 14 14 C 1.39172 * 121.46071 * 359.68475 * 13 12 11 15 15 C 1.36246 * 121.75745 * 0.02562 * 14 13 12 16 16 C 1.40483 * 119.70442 * 0.02562 * 15 14 13 17 17 N 1.33651 * 120.98822 * 180.02562 * 16 15 14 18 18 C 1.31580 * 121.74859 * 179.97438 * 17 16 15 19 19 C 1.47919 * 119.44878 * 180.02562 * 18 17 16 20 20 C 1.39622 * 120.11692 * 316.31213 * 19 18 17 21 21 C 1.37909 * 119.91342 * 180.02562 * 20 19 18 22 22 C 1.38476 * 120.15959 * 0.02562 * 21 20 19 23 23 Cl 1.73602 * 119.88038 * 180.02562 * 22 21 20 24 24 C 1.38707 * 120.24163 * 359.97438 * 22 21 20 25 25 F 1.35094 * 119.96094 * 180.02562 * 24 22 21 26 26 C 1.38141 * 120.07858 * 359.71897 * 24 22 21 27 27 H 0.96995 * 120.00317 * 0.02562 * 1 2 3 28 28 H 1.08000 * 121.02046 * 0.02562 * 10 9 7 29 29 H 1.08004 * 120.26049 * 359.42878 * 12 11 10 30 30 H 1.07994 * 119.26987 * 179.70268 * 13 12 11 31 31 H 1.07999 * 119.11594 * 179.97438 * 14 13 12 32 32 H 1.08000 * 120.14417 * 179.97438 * 15 14 13 33 33 H 1.08000 * 120.04601 * 359.97438 * 20 19 18 34 34 H 1.08001 * 119.92100 * 180.02562 * 21 20 19 35 35 H 1.07998 * 120.07935 * 180.29862 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4892 2.0464 -1.4001 5 1 1.4390 2.6527 0.6999 6 1 3.5391 1.4403 0.7001 7 6 2.0081 -1.2132 0.0005 8 1 3.0655 -1.2263 -0.2189 9 6 1.3335 -2.4158 0.2872 10 6 0.1971 -2.4141 1.1115 11 6 -0.4300 -3.6394 1.3677 12 6 -1.5782 -3.7204 2.1783 13 6 -2.1599 -4.9316 2.3965 14 6 -1.6486 -6.0956 1.8301 15 6 -0.5442 -6.0797 1.0325 16 6 0.1056 -4.8627 0.7673 17 7 1.1906 -4.8175 -0.0118 18 6 1.8105 -3.6860 -0.2705 19 6 3.0069 -3.6947 -1.1402 20 6 3.9853 -4.6771 -0.9760 21 6 5.0994 -4.6808 -1.7889 22 6 5.2501 -3.7124 -2.7671 23 17 6.6551 -3.7244 -3.7868 24 6 4.2821 -2.7334 -2.9360 25 9 4.4347 -1.7916 -3.8925 26 6 3.1592 -2.7240 -2.1315 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1793 -1.4963 1.5385 29 1 -1.9917 -2.8293 2.6270 30 1 -3.0378 -4.9907 3.0228 31 1 -2.1401 -7.0365 2.0289 32 1 -0.1694 -6.9988 0.6068 33 1 3.8704 -5.4325 -0.2128 34 1 5.8561 -5.4409 -1.6622 35 1 2.4032 -1.9646 -2.2661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241230729.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:24 Heat of formation + Delta-G solvation = 8.369383 kcal Electronic energy + Delta-G solvation = -23923.055652 eV Core-core repulsion = 20211.166864 eV Total energy + Delta-G solvation = -3711.888788 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.052 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.60898 -39.40546 -38.44271 -36.52709 -35.81859 -34.35645 -31.84579 -31.41454 -30.33021 -29.38701 -28.31001 -25.82498 -23.81943 -22.68806 -21.85350 -21.22075 -20.57538 -18.22696 -17.53446 -16.62878 -16.18855 -16.06353 -15.92880 -15.40187 -15.14358 -14.83253 -13.88922 -13.61566 -13.54028 -13.32587 -13.10419 -12.96971 -12.72394 -12.60173 -12.10263 -11.91942 -11.80211 -11.47373 -11.40620 -11.20188 -11.15710 -10.88968 -10.72515 -10.67015 -10.54616 -10.06578 -9.69618 -9.13362 -8.70405 -8.49996 -8.37670 -7.50607 -7.28044 -7.13196 -4.71796 0.96072 1.45985 1.64960 1.94577 2.20142 2.80904 2.88583 2.93197 3.27138 3.60407 3.66536 3.94645 4.34703 4.52430 4.85768 5.04200 5.32309 5.39621 5.52010 5.57565 5.61562 5.66836 5.92967 6.02915 6.06795 6.15982 6.17195 6.28672 6.37182 6.52215 6.69535 6.73986 6.83356 6.91407 7.03913 7.12916 7.24101 7.27563 7.53610 7.59751 7.77108 8.11274 8.30249 8.36141 9.03059 9.73767 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.004938 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.019680 B = 5668.555878 C = 8018.295504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.429 4.429 8 H 0.091 0.909 9 C 0.080 3.920 10 C -0.165 4.165 11 C -0.043 4.043 12 C -0.129 4.129 13 C -0.115 4.115 14 C -0.177 4.177 15 C -0.058 4.058 16 C 0.025 3.975 17 N -0.449 5.449 18 C 0.098 3.902 19 C 0.039 3.961 20 C -0.099 4.099 21 C -0.091 4.091 22 C -0.084 4.084 23 Cl -0.070 7.070 24 C 0.100 3.900 25 F -0.132 7.132 26 C -0.111 4.111 27 H 0.290 0.710 28 H 0.134 0.866 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.380 -3.402 -0.883 5.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.149 4.149 3 Si 0.733 3.267 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.457 4.457 8 H 0.109 0.891 9 C 0.075 3.925 10 C -0.191 4.191 11 C -0.046 4.046 12 C -0.148 4.148 13 C -0.134 4.134 14 C -0.197 4.197 15 C -0.076 4.076 16 C -0.098 4.098 17 N -0.155 5.155 18 C -0.056 4.056 19 C 0.038 3.962 20 C -0.119 4.119 21 C -0.110 4.110 22 C -0.111 4.111 23 Cl -0.041 7.041 24 C 0.080 3.920 25 F -0.111 7.111 26 C -0.131 4.131 27 H 0.101 0.899 28 H 0.151 0.849 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.506 -4.040 -1.324 6.195 hybrid contribution 0.018 1.753 0.096 1.756 sum 4.525 -2.287 -1.228 5.216 Atomic orbital electron populations 1.69740 1.07763 1.30408 1.31276 1.26032 0.94902 1.01800 0.92205 0.86226 0.80744 0.79735 0.80008 1.18736 1.19607 1.17898 1.19687 0.97133 0.90205 1.38626 0.89066 1.19151 0.92321 0.91282 0.89753 1.21525 0.99871 0.95508 1.02175 1.19713 0.94806 0.93981 0.96089 1.20877 0.96282 0.97143 1.00488 1.20508 0.99591 0.92970 1.00286 1.20293 0.98996 0.97576 1.02849 1.20505 0.94577 0.95780 0.96781 1.19258 0.95784 0.92600 1.02190 1.67330 1.07179 1.28263 1.12732 1.20811 0.96030 0.89688 0.99079 1.18355 0.92755 0.92617 0.92454 1.21301 0.92396 0.98633 0.99534 1.20762 0.98692 0.97467 0.94053 1.20956 0.91031 1.00036 0.99109 1.98343 1.39910 1.98326 1.67533 1.17257 0.95577 0.88652 0.90497 1.91501 1.95642 1.62630 1.61324 1.21484 0.96830 1.00606 0.94163 0.89901 0.84880 0.86976 0.87724 0.87571 0.86794 0.84470 0.84477 0.82364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.43 10.97 55.56 0.61 -16.82 16 2 C 0.07 1.58 5.21 -17.31 -0.09 1.49 16 3 Si 0.91 16.64 29.58 -169.99 -5.03 11.61 16 4 H -0.26 -4.81 7.11 56.52 0.40 -4.40 16 5 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 6 H -0.26 -4.69 7.11 56.52 0.40 -4.28 16 7 C -0.43 -9.70 6.77 -37.91 -0.26 -9.95 16 8 H 0.09 1.99 6.50 -52.48 -0.34 1.65 16 9 C 0.08 1.89 5.66 -104.69 -0.59 1.29 16 10 C -0.17 -3.93 8.52 -38.11 -0.32 -4.25 16 11 C -0.04 -0.98 5.87 -104.98 -0.62 -1.60 16 12 C -0.13 -2.53 9.80 -39.38 -0.39 -2.92 16 13 C -0.12 -2.01 9.91 -39.99 -0.40 -2.40 16 14 C -0.18 -3.05 9.90 -39.95 -0.40 -3.44 16 15 C -0.06 -1.11 9.98 -39.45 -0.39 -1.50 16 16 C 0.03 0.56 6.74 -82.94 -0.56 0.01 16 17 N -0.45 -10.08 10.06 -4.83 -0.05 -10.12 16 18 C 0.10 2.18 6.55 -80.59 -0.53 1.65 16 19 C 0.04 0.76 5.27 -104.92 -0.55 0.21 16 20 C -0.10 -1.63 9.64 -39.19 -0.38 -2.01 16 21 C -0.09 -1.31 9.81 -39.61 -0.39 -1.70 16 22 C -0.08 -1.30 6.33 -39.32 -0.25 -1.55 16 23 Cl -0.07 -0.97 28.60 -51.86 -1.48 -2.45 16 24 C 0.10 1.73 7.27 -39.44 -0.29 1.44 16 25 F -0.13 -2.30 16.83 2.25 0.04 -2.27 16 26 C -0.11 -2.08 7.82 -39.12 -0.31 -2.38 16 27 H 0.29 5.96 8.29 -40.82 -0.34 5.62 16 28 H 0.13 3.21 6.35 -52.49 -0.33 2.88 16 29 H 0.11 2.02 8.06 -52.48 -0.42 1.59 16 30 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.11 1.97 8.06 -52.49 -0.42 1.54 16 33 H 0.14 2.14 8.06 -52.49 -0.42 1.72 16 34 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.16 3.14 6.77 -52.49 -0.36 2.78 16 LS Contribution 324.68 15.07 4.89 4.89 Total: -1.00 -24.44 324.68 -10.42 -34.86 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -2.70 Total: 7.93 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -6.70 Total: -27.63 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.56 Total: -26.95 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 16.64 SS G_CDS: -5.03 Total: 11.61 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.48 Total: -2.45 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -24.44 -10.42 -34.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241230729.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.231 kcal (2) G-P(sol) polarization free energy of solvation -24.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds