Wall clock time and date at job start Tue Mar 31 2020 15:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30764 * 1 3 3 Si 1.86800 * 119.99647 * 2 1 4 4 H 1.48503 * 109.47249 * 269.99275 * 3 2 1 5 5 H 1.48491 * 109.47549 * 29.99812 * 3 2 1 6 6 H 1.48504 * 109.47097 * 149.99735 * 3 2 1 7 7 C 1.40087 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00064 * 166.43037 * 7 2 1 9 9 C 1.40835 * 120.00426 * 346.43305 * 7 2 1 10 10 C 1.40382 * 120.41132 * 331.88171 * 9 7 2 11 11 C 1.40014 * 117.96656 * 180.29238 * 10 9 7 12 12 C 1.40786 * 121.40386 * 180.34073 * 11 10 9 13 13 C 1.36124 * 119.47483 * 179.70095 * 12 11 10 14 14 C 1.39172 * 121.46071 * 359.68475 * 13 12 11 15 15 C 1.36246 * 121.75745 * 0.02562 * 14 13 12 16 16 C 1.40483 * 119.70442 * 0.02562 * 15 14 13 17 17 N 1.33651 * 120.98822 * 180.02562 * 16 15 14 18 18 C 1.31580 * 121.74859 * 179.97438 * 17 16 15 19 19 C 1.47919 * 119.44878 * 180.02562 * 18 17 16 20 20 C 1.39622 * 120.11692 * 316.31213 * 19 18 17 21 21 C 1.37909 * 119.91342 * 180.02562 * 20 19 18 22 22 C 1.38476 * 120.15959 * 0.02562 * 21 20 19 23 23 Cl 1.73602 * 119.88038 * 180.02562 * 22 21 20 24 24 C 1.38707 * 120.24163 * 359.97438 * 22 21 20 25 25 F 1.35094 * 119.96094 * 180.02562 * 24 22 21 26 26 C 1.38141 * 120.07858 * 359.71897 * 24 22 21 27 27 H 0.96995 * 120.00317 * 0.02562 * 1 2 3 28 28 H 1.08000 * 121.02046 * 0.02562 * 10 9 7 29 29 H 1.08004 * 120.26049 * 359.42878 * 12 11 10 30 30 H 1.07994 * 119.26987 * 179.70268 * 13 12 11 31 31 H 1.07999 * 119.11594 * 179.97438 * 14 13 12 32 32 H 1.08000 * 120.14417 * 179.97438 * 15 14 13 33 33 H 1.08000 * 120.04601 * 359.97438 * 20 19 18 34 34 H 1.08001 * 119.92100 * 180.02562 * 21 20 19 35 35 H 1.07998 * 120.07935 * 180.29862 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4892 2.0464 -1.4001 5 1 1.4390 2.6527 0.6999 6 1 3.5391 1.4403 0.7001 7 6 2.0081 -1.2132 0.0005 8 1 3.0655 -1.2263 -0.2189 9 6 1.3335 -2.4158 0.2872 10 6 0.1971 -2.4141 1.1115 11 6 -0.4300 -3.6394 1.3677 12 6 -1.5782 -3.7204 2.1783 13 6 -2.1599 -4.9316 2.3965 14 6 -1.6486 -6.0956 1.8301 15 6 -0.5442 -6.0797 1.0325 16 6 0.1056 -4.8627 0.7673 17 7 1.1906 -4.8175 -0.0118 18 6 1.8105 -3.6860 -0.2705 19 6 3.0069 -3.6947 -1.1402 20 6 3.9853 -4.6771 -0.9760 21 6 5.0994 -4.6808 -1.7889 22 6 5.2501 -3.7124 -2.7671 23 17 6.6551 -3.7244 -3.7868 24 6 4.2821 -2.7334 -2.9360 25 9 4.4347 -1.7916 -3.8925 26 6 3.1592 -2.7240 -2.1315 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1793 -1.4963 1.5385 29 1 -1.9917 -2.8293 2.6270 30 1 -3.0378 -4.9907 3.0228 31 1 -2.1401 -7.0365 2.0289 32 1 -0.1694 -6.9988 0.6068 33 1 3.8704 -5.4325 -0.2128 34 1 5.8561 -5.4409 -1.6622 35 1 2.4032 -1.9646 -2.2661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241230729.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:23 Heat of formation + Delta-G solvation = -0.246131 kcal Electronic energy + Delta-G solvation = -23923.429248 eV Core-core repulsion = 20211.166864 eV Total energy + Delta-G solvation = -3712.262385 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.052 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.98656 -40.94508 -39.85101 -37.85218 -37.23747 -35.99682 -33.46563 -32.84334 -31.70147 -30.96043 -29.79800 -27.46379 -25.29916 -24.11094 -23.38703 -22.67973 -22.16680 -19.81352 -18.97946 -18.15491 -17.66424 -17.48406 -17.32141 -16.77894 -16.65127 -16.35741 -15.28441 -15.12519 -14.97360 -14.80571 -14.60990 -14.45176 -14.16415 -13.95181 -13.69442 -13.50770 -13.15814 -12.96857 -12.86152 -12.62730 -12.58652 -12.31718 -12.13915 -12.02126 -11.93642 -11.64849 -11.31596 -10.76767 -10.22123 -9.95671 -9.80037 -9.12568 -8.85216 -8.74800 -6.43246 -0.49147 0.09185 0.16589 0.38972 0.95705 1.32068 1.35912 1.47809 1.63953 2.08807 2.14692 2.51728 2.89683 2.99806 3.40119 3.65126 3.77325 3.99270 4.07751 4.14190 4.23793 4.28226 4.54726 4.58020 4.60909 4.63036 4.75562 4.90783 4.96833 5.05377 5.08288 5.22906 5.33764 5.47392 5.55340 5.64296 5.71716 5.77134 5.87918 5.93291 6.21551 6.43338 6.62053 6.67704 7.34382 8.13181 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.004938 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.019680 B = 5668.555878 C = 8018.295504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.039 3.961 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.255 1.255 7 C -0.446 4.446 8 H 0.091 0.909 9 C 0.054 3.946 10 C -0.194 4.194 11 C -0.065 4.065 12 C -0.151 4.151 13 C -0.101 4.101 14 C -0.161 4.161 15 C -0.073 4.073 16 C -0.001 4.001 17 N -0.457 5.457 18 C 0.090 3.910 19 C 0.016 3.984 20 C -0.093 4.093 21 C -0.072 4.072 22 C -0.078 4.078 23 Cl -0.047 7.047 24 C 0.093 3.907 25 F -0.135 7.135 26 C -0.120 4.120 27 H 0.295 0.705 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.146 0.854 31 H 0.150 0.850 32 H 0.133 0.867 33 H 0.147 0.853 34 H 0.177 0.823 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.077 -5.260 -0.622 7.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.179 4.179 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.178 1.178 7 C -0.474 4.474 8 H 0.109 0.891 9 C 0.049 3.951 10 C -0.220 4.220 11 C -0.067 4.067 12 C -0.170 4.170 13 C -0.119 4.119 14 C -0.181 4.181 15 C -0.091 4.091 16 C -0.124 4.124 17 N -0.164 5.164 18 C -0.065 4.065 19 C 0.015 3.985 20 C -0.113 4.113 21 C -0.090 4.090 22 C -0.106 4.106 23 Cl -0.018 7.018 24 C 0.073 3.927 25 F -0.114 7.114 26 C -0.140 4.140 27 H 0.106 0.894 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.164 0.836 31 H 0.167 0.833 32 H 0.151 0.849 33 H 0.165 0.835 34 H 0.195 0.805 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.194 -5.913 -1.060 7.941 hybrid contribution -0.250 2.133 0.014 2.148 sum 4.944 -3.779 -1.045 6.310 Atomic orbital electron populations 1.69796 1.09008 1.31353 1.32438 1.26743 0.95441 1.04324 0.91416 0.85329 0.79476 0.76156 0.79925 1.18512 1.18764 1.17841 1.19785 0.97159 0.90721 1.39727 0.89110 1.19473 0.92869 0.92459 0.90277 1.21481 1.01148 0.95687 1.03644 1.20019 0.95954 0.93794 0.96942 1.21081 0.96062 0.98908 1.00999 1.20996 0.99904 0.91851 0.99144 1.20822 0.97592 0.99284 1.00378 1.20810 0.95361 0.95259 0.97685 1.19817 0.96255 0.93779 1.02540 1.67397 1.07580 1.28227 1.13189 1.21183 0.96886 0.89256 0.99147 1.18349 0.92947 0.94294 0.92918 1.21411 0.92209 0.97741 0.99905 1.21101 0.98333 0.97350 0.92197 1.21075 0.91094 0.99231 0.99169 1.98356 1.38383 1.98224 1.66880 1.17267 0.95730 0.89270 0.90427 1.91488 1.95638 1.62910 1.61369 1.21244 0.97253 1.00385 0.95104 0.89385 0.86440 0.86245 0.83631 0.83257 0.84936 0.83542 0.80518 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.54 10.97 21.85 0.24 -38.30 16 2 C 0.04 1.79 5.21 85.30 0.44 2.24 16 3 Si 0.97 35.25 29.58 68.60 2.03 37.27 16 4 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 5 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 6 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 7 C -0.45 -21.46 6.77 23.35 0.16 -21.31 16 8 H 0.09 4.21 6.50 -2.91 -0.02 4.19 16 9 C 0.05 2.72 5.66 -19.91 -0.11 2.61 16 10 C -0.19 -9.84 8.52 23.22 0.20 -9.64 16 11 C -0.06 -3.04 5.87 -20.09 -0.12 -3.16 16 12 C -0.15 -5.95 9.80 22.40 0.22 -5.73 16 13 C -0.10 -3.23 9.91 22.00 0.22 -3.01 16 14 C -0.16 -4.99 9.90 22.03 0.22 -4.77 16 15 C -0.07 -2.68 9.98 22.35 0.22 -2.45 16 16 C 0.00 -0.04 6.74 41.55 0.28 0.24 16 17 N -0.46 -21.10 10.06 -169.18 -1.70 -22.80 16 18 C 0.09 4.19 6.55 43.96 0.29 4.47 16 19 C 0.02 0.64 5.27 -20.06 -0.11 0.53 16 20 C -0.09 -2.99 9.64 22.53 0.22 -2.77 16 21 C -0.07 -1.88 9.81 22.25 0.22 -1.66 16 22 C -0.08 -2.28 6.33 22.44 0.14 -2.13 16 23 Cl -0.05 -1.19 28.60 -2.72 -0.08 -1.27 16 24 C 0.09 3.20 7.27 22.36 0.16 3.37 16 25 F -0.14 -4.71 16.83 44.97 0.76 -3.95 16 26 C -0.12 -4.66 7.82 22.57 0.18 -4.49 16 27 H 0.30 12.80 8.29 -92.71 -0.77 12.03 16 28 H 0.12 6.14 6.35 -2.91 -0.02 6.12 16 29 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 30 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 31 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 32 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 33 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 34 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 35 H 0.14 5.83 6.77 -2.91 -0.02 5.81 16 Total: -1.00 -56.15 324.68 5.23 -50.92 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 1.15 Total: 25.78 kcal Atomic # 6 Polarization: -50.48 SS G_CDS: 2.83 Total: -47.66 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -1.46 Total: -61.10 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.76 Total: -3.95 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 2.03 Total: 37.27 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -56.15 5.23 -50.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241230729.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.671 kcal (2) G-P(sol) polarization free energy of solvation -56.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds