Wall clock time and date at job start Tue Mar 31 2020 15:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30761 * 1 3 3 Si 1.86799 * 120.00029 * 2 1 4 4 H 1.48503 * 109.47032 * 269.99428 * 3 2 1 5 5 H 1.48494 * 109.47476 * 29.99712 * 3 2 1 6 6 H 1.48503 * 109.47354 * 149.99914 * 3 2 1 7 7 C 1.40090 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00503 * 164.35769 * 7 2 1 9 9 C 1.40838 * 119.99813 * 344.35906 * 7 2 1 10 10 C 1.40372 * 120.41367 * 333.60986 * 9 7 2 11 11 C 1.40020 * 117.96268 * 179.97438 * 10 9 7 12 12 C 1.40786 * 121.38889 * 179.97438 * 11 10 9 13 13 C 1.36137 * 119.46519 * 180.02562 * 12 11 10 14 14 C 1.39155 * 121.46381 * 0.02562 * 13 12 11 15 15 C 1.36249 * 121.75896 * 359.97438 * 14 13 12 16 16 C 1.40484 * 119.70854 * 359.97438 * 15 14 13 17 17 N 1.33653 * 120.99464 * 179.97438 * 16 15 14 18 18 C 1.31592 * 121.74170 * 180.02562 * 17 16 15 19 19 C 1.47868 * 119.44379 * 179.97438 * 18 17 16 20 20 C 1.39608 * 120.15230 * 129.60653 * 19 18 17 21 21 C 1.38008 * 119.86265 * 179.74691 * 20 19 18 22 22 Cl 1.73604 * 119.90683 * 180.22946 * 21 20 19 23 23 C 1.38549 * 120.18135 * 0.50208 * 21 20 19 24 24 C 1.38257 * 120.31366 * 359.77188 * 23 21 20 25 25 C 1.38253 * 120.12809 * 359.97438 * 24 23 21 26 26 F 1.35102 * 120.08726 * 180.02562 * 25 24 23 27 27 H 0.96998 * 120.00129 * 0.02562 * 1 2 3 28 28 H 1.07989 * 121.01822 * 359.95294 * 10 9 7 29 29 H 1.08001 * 120.26888 * 0.04881 * 12 11 10 30 30 H 1.08005 * 119.26438 * 179.97438 * 13 12 11 31 31 H 1.07999 * 119.12108 * 179.97438 * 14 13 12 32 32 H 1.08003 * 120.14480 * 180.27273 * 15 14 13 33 33 H 1.08000 * 120.06655 * 359.97438 * 20 19 18 34 34 H 1.07999 * 119.84001 * 179.74436 * 23 21 20 35 35 H 1.07995 * 119.93449 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4892 2.0463 -1.4001 5 1 1.4391 2.6527 0.6999 6 1 3.5392 1.4402 0.7001 7 6 2.0081 -1.2132 0.0005 8 1 3.0581 -1.2307 -0.2516 9 6 1.3430 -2.4102 0.3299 10 6 0.2113 -2.3890 1.1602 11 6 -0.4102 -3.6088 1.4540 12 6 -1.5492 -3.6714 2.2792 13 6 -2.1219 -4.8786 2.5397 14 6 -1.6064 -6.0569 2.0083 15 6 -0.5070 -6.0599 1.2035 16 6 0.1323 -4.8479 0.8936 17 7 1.2126 -4.8211 0.1072 18 6 1.8232 -3.6945 -0.1921 19 6 3.0151 -3.7238 -1.0667 20 6 3.0947 -2.8753 -2.1724 21 6 4.2122 -2.9039 -2.9817 22 17 4.3149 -1.8450 -4.3536 23 6 5.2499 -3.7795 -2.7055 24 6 5.1764 -4.6271 -1.6157 25 6 4.0652 -4.6054 -0.7934 26 9 3.9946 -5.4337 0.2716 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1681 -1.4605 1.5602 29 1 -1.9654 -2.7689 2.7019 30 1 -2.9953 -4.9229 3.1735 31 1 -2.0907 -6.9940 2.2401 32 1 -0.1316 -6.9894 0.8016 33 1 2.2849 -2.1952 -2.3919 34 1 6.1200 -3.8002 -3.3449 35 1 5.9887 -5.3073 -1.4064 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241330591.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:27 Heat of formation + Delta-G solvation = 8.329291 kcal Electronic energy + Delta-G solvation = -24228.797278 eV Core-core repulsion = 20516.906752 eV Total energy + Delta-G solvation = -3711.890526 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.052 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.36782 -39.28384 -38.46404 -36.34447 -35.83169 -34.30944 -31.78214 -31.63445 -30.00293 -29.38511 -28.33863 -25.76486 -23.84901 -22.56412 -21.79473 -21.20963 -20.54692 -18.15865 -17.42341 -16.64483 -16.43820 -15.96628 -15.84527 -15.09115 -15.01386 -14.71235 -13.91489 -13.55473 -13.51412 -13.16077 -13.04144 -12.90825 -12.85627 -12.61334 -12.14616 -11.98748 -11.82569 -11.42057 -11.26346 -11.08198 -10.99724 -10.85355 -10.73227 -10.61277 -10.50122 -10.00949 -9.66226 -9.08298 -8.83768 -8.38565 -8.23913 -7.48690 -7.23816 -7.10301 -4.67136 1.07932 1.37598 1.69468 1.99647 2.33622 2.82329 2.89663 2.94703 3.33875 3.63269 3.68675 3.90690 4.55505 4.57507 4.87435 4.97500 5.23884 5.38089 5.55596 5.58007 5.62534 5.68008 5.97061 6.04198 6.12556 6.18221 6.24495 6.27034 6.43385 6.55324 6.65254 6.72337 6.78001 6.93744 7.03877 7.17798 7.30254 7.33398 7.58350 7.64988 7.82818 8.15978 8.34343 8.41325 9.10602 9.76084 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.009854 B = 0.005794 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.938316 B = 4831.187237 C = 6966.325392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.426 4.426 8 H 0.089 0.911 9 C 0.082 3.918 10 C -0.170 4.170 11 C -0.042 4.042 12 C -0.130 4.130 13 C -0.115 4.115 14 C -0.179 4.179 15 C -0.055 4.055 16 C 0.024 3.976 17 N -0.443 5.443 18 C 0.098 3.902 19 C -0.014 4.014 20 C -0.049 4.049 21 C -0.053 4.053 22 Cl -0.075 7.075 23 C -0.093 4.093 24 C -0.153 4.153 25 C 0.119 3.881 26 F -0.127 7.127 27 H 0.289 0.711 28 H 0.134 0.866 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.152 0.848 34 H 0.136 0.864 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.097 -1.943 -2.912 6.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.148 4.148 3 Si 0.732 3.268 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.454 4.454 8 H 0.107 0.893 9 C 0.077 3.923 10 C -0.195 4.195 11 C -0.044 4.044 12 C -0.149 4.149 13 C -0.133 4.133 14 C -0.199 4.199 15 C -0.074 4.074 16 C -0.099 4.099 17 N -0.149 5.149 18 C -0.057 4.057 19 C -0.017 4.017 20 C -0.068 4.068 21 C -0.079 4.079 22 Cl -0.047 7.047 23 C -0.112 4.112 24 C -0.172 4.172 25 C 0.098 3.902 26 F -0.105 7.105 27 H 0.101 0.899 28 H 0.151 0.849 29 H 0.130 0.870 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.170 0.830 34 H 0.154 0.846 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.096 -2.570 -3.274 6.580 hybrid contribution -0.111 1.518 0.423 1.580 sum 4.985 -1.053 -2.851 5.838 Atomic orbital electron populations 1.69754 1.07798 1.30365 1.31013 1.26030 0.94854 1.01783 0.92140 0.86241 0.80799 0.79772 0.79963 1.18713 1.19649 1.17925 1.19639 0.97637 0.90392 1.37710 0.89252 1.19123 0.92288 0.91082 0.89809 1.21494 0.99990 0.95625 1.02433 1.19708 0.94796 0.93937 0.96005 1.20862 0.96513 0.97149 1.00411 1.20496 0.99547 0.92911 1.00321 1.20271 0.99119 0.97399 1.03134 1.20509 0.94525 0.95881 0.96501 1.19256 0.95811 0.92418 1.02456 1.67365 1.07039 1.28813 1.11715 1.20653 0.96007 0.89734 0.99278 1.18435 0.92977 0.95285 0.94961 1.21171 0.97033 0.97292 0.91343 1.20723 0.97327 0.97249 0.92636 1.98347 1.98272 1.65204 1.42843 1.20760 0.98071 0.94940 0.97408 1.20870 0.98089 1.02183 0.96048 1.17882 0.94875 0.91221 0.86183 1.91513 1.96406 1.69277 1.53317 0.89936 0.84870 0.87018 0.87768 0.87614 0.86864 0.83040 0.84620 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.56 10.97 55.56 0.61 -16.95 16 2 C 0.07 1.63 5.18 -17.31 -0.09 1.54 16 3 Si 0.91 16.72 29.59 -169.99 -5.03 11.69 16 4 H -0.26 -4.77 7.11 56.52 0.40 -4.36 16 5 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 6 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 7 C -0.43 -9.87 7.20 -37.90 -0.27 -10.14 16 8 H 0.09 1.99 6.68 -52.48 -0.35 1.64 16 9 C 0.08 2.01 5.69 -104.69 -0.60 1.42 16 10 C -0.17 -4.18 8.53 -38.11 -0.33 -4.51 16 11 C -0.04 -0.99 5.87 -104.98 -0.62 -1.61 16 12 C -0.13 -2.67 9.80 -39.37 -0.39 -3.05 16 13 C -0.11 -2.09 9.91 -40.00 -0.40 -2.48 16 14 C -0.18 -3.25 9.90 -39.96 -0.40 -3.65 16 15 C -0.06 -1.14 9.98 -39.45 -0.39 -1.53 16 16 C 0.02 0.57 6.74 -82.94 -0.56 0.01 16 17 N -0.44 -10.71 9.72 -4.84 -0.05 -10.76 16 18 C 0.10 2.31 6.24 -80.61 -0.50 1.81 16 19 C -0.01 -0.30 5.06 -104.86 -0.53 -0.83 16 20 C -0.05 -0.90 7.79 -39.15 -0.30 -1.20 16 21 C -0.05 -0.82 6.31 -39.55 -0.25 -1.07 16 22 Cl -0.08 -1.07 28.95 -51.86 -1.50 -2.57 16 23 C -0.09 -1.26 9.82 -39.46 -0.39 -1.65 16 24 C -0.15 -2.22 10.01 -39.57 -0.40 -2.61 16 25 C 0.12 2.20 7.25 -38.99 -0.28 1.92 16 26 F -0.13 -2.54 16.46 2.25 0.04 -2.50 16 27 H 0.29 6.00 8.29 -40.82 -0.34 5.66 16 28 H 0.13 3.30 6.30 -52.49 -0.33 2.97 16 29 H 0.11 2.09 8.06 -52.49 -0.42 1.66 16 30 H 0.10 1.56 8.06 -52.48 -0.42 1.13 16 31 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 32 H 0.11 2.12 8.06 -52.48 -0.42 1.70 16 33 H 0.15 2.95 7.36 -52.49 -0.39 2.57 16 34 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 325.28 15.07 4.90 4.90 Total: -1.00 -25.90 325.28 -10.45 -36.36 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -2.74 Total: 7.48 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -6.69 Total: -27.64 kcal Atomic # 7 Polarization: -28.28 SS G_CDS: 0.56 Total: -27.72 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -5.03 Total: 11.69 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -25.90 -10.45 -36.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241330591.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.687 kcal (2) G-P(sol) polarization free energy of solvation -25.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds