Wall clock time and date at job start Tue Mar 31 2020 15:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30765 * 1 3 3 Si 1.86792 * 120.00363 * 2 1 4 4 H 1.48497 * 109.47488 * 270.45770 * 3 2 1 5 5 H 1.48497 * 109.47279 * 30.45959 * 3 2 1 6 6 H 1.48506 * 109.47310 * 150.45729 * 3 2 1 7 7 C 1.40094 * 119.99626 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00007 * 342.45011 * 7 2 1 9 9 C 1.40838 * 120.00212 * 162.44421 * 7 2 1 10 10 C 1.40385 * 120.41210 * 330.89469 * 9 7 2 11 11 C 1.40017 * 117.96454 * 179.97438 * 10 9 7 12 12 C 1.40779 * 121.40867 * 180.02562 * 11 10 9 13 13 C 1.36131 * 119.47247 * 179.97438 * 12 11 10 14 14 C 1.39161 * 121.46378 * 359.97438 * 13 12 11 15 15 C 1.36250 * 121.75583 * 0.02562 * 14 13 12 16 16 C 1.40481 * 119.70633 * 359.97438 * 15 14 13 17 17 N 1.33651 * 120.98459 * 180.27614 * 16 15 14 18 18 C 1.31570 * 121.74549 * 180.24059 * 17 16 15 19 19 C 1.47918 * 119.44494 * 179.75789 * 18 17 16 20 20 C 1.39625 * 120.13660 * 129.48713 * 19 18 17 21 21 C 1.37915 * 119.91376 * 179.72002 * 20 19 18 22 22 C 1.38401 * 120.19618 * 0.25899 * 21 20 19 23 23 C 1.38505 * 120.28782 * 0.03948 * 22 21 20 24 24 F 1.35096 * 119.95790 * 180.02562 * 23 22 21 25 25 C 1.38347 * 120.07722 * 359.97438 * 23 22 21 26 26 Cl 1.73598 * 120.09466 * 180.02562 * 25 23 22 27 27 H 0.96998 * 119.99354 * 359.97438 * 1 2 3 28 28 H 1.07997 * 121.01654 * 359.97438 * 10 9 7 29 29 H 1.08005 * 120.26362 * 0.02562 * 12 11 10 30 30 H 1.07995 * 119.26825 * 180.02562 * 13 12 11 31 31 H 1.08009 * 119.12399 * 179.97438 * 14 13 12 32 32 H 1.07998 * 120.14827 * 179.97438 * 15 14 13 33 33 H 1.07997 * 120.04511 * 359.97438 * 20 19 18 34 34 H 1.07995 * 119.90205 * 180.27599 * 21 20 19 35 35 H 1.07996 * 119.85343 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6176 0.0000 4 1 2.4796 2.0519 -1.4000 5 1 1.4442 2.6498 0.7097 6 1 3.5441 1.4372 0.6904 7 6 2.0080 -1.2133 -0.0005 8 1 1.5057 -2.1270 0.2811 9 6 3.3672 -1.2417 -0.3684 10 6 3.8780 -0.2990 -1.2747 11 6 5.2368 -0.3741 -1.6041 12 6 5.8247 0.5346 -2.5044 13 6 7.1499 0.4256 -2.7962 14 6 7.9407 -0.5659 -2.2234 15 6 7.4287 -1.4736 -1.3457 16 6 6.0680 -1.4177 -1.0009 17 7 5.5403 -2.2918 -0.1385 18 6 4.2671 -2.2561 0.1914 19 6 3.7354 -3.2519 1.1472 20 6 2.9854 -2.8354 2.2488 21 6 2.4870 -3.7683 3.1339 22 6 2.7325 -5.1159 2.9364 23 6 3.4807 -5.5378 1.8499 24 9 3.7159 -6.8550 1.6633 25 6 3.9866 -4.6120 0.9549 26 17 4.9238 -5.1403 -0.4075 27 1 -0.4849 0.8401 0.0004 28 1 3.2423 0.4609 -1.7046 29 1 5.2294 1.3125 -2.9592 30 1 7.5977 1.1247 -3.4869 31 1 8.9881 -0.6179 -2.4822 32 1 8.0661 -2.2327 -0.9169 33 1 2.7923 -1.7844 2.4053 34 1 1.9031 -3.4462 3.9834 35 1 2.3392 -5.8417 3.6328 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242573528.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:12 Heat of formation + Delta-G solvation = 14.119567 kcal Electronic energy + Delta-G solvation = -24344.574113 eV Core-core repulsion = 20632.934672 eV Total energy + Delta-G solvation = -3711.639441 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.052 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.68037 -39.51864 -38.47658 -36.09482 -35.99112 -34.29132 -32.34806 -31.52728 -30.24880 -29.73424 -28.50163 -25.67171 -24.05792 -22.49552 -21.85879 -21.33141 -20.88481 -18.43275 -17.53541 -16.61598 -16.23947 -16.17669 -16.04908 -15.47330 -15.30850 -14.77330 -14.03821 -13.78030 -13.75106 -13.48356 -13.13393 -12.90731 -12.83712 -12.57834 -12.32354 -12.18542 -11.74867 -11.44425 -11.32083 -11.16719 -11.08892 -10.82203 -10.72689 -10.53738 -10.28224 -10.11140 -9.77477 -9.24228 -8.75600 -8.35703 -8.34685 -7.64612 -7.40495 -7.38424 -4.83324 0.97882 1.35488 1.55731 1.82488 2.51373 2.83999 2.94207 2.99115 3.15493 3.52505 3.68502 3.85956 4.32106 4.45384 4.77278 5.01359 5.16327 5.28839 5.40487 5.47527 5.50842 5.58594 5.81691 5.85293 5.98440 6.04893 6.07612 6.22856 6.32822 6.44441 6.51332 6.63505 6.74888 6.79232 6.95867 7.00704 7.08397 7.17043 7.35046 7.47866 7.61281 7.87028 8.11409 8.28528 8.92047 9.58607 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.010265 B = 0.006562 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.149090 B = 4266.202660 C = 6505.872814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.083 3.917 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.243 1.243 7 C -0.402 4.402 8 H 0.105 0.895 9 C 0.064 3.936 10 C -0.263 4.263 11 C -0.014 4.014 12 C -0.148 4.148 13 C -0.101 4.101 14 C -0.182 4.182 15 C -0.049 4.049 16 C 0.021 3.979 17 N -0.426 5.426 18 C 0.119 3.881 19 C 0.035 3.965 20 C -0.081 4.081 21 C -0.095 4.095 22 C -0.150 4.150 23 C 0.094 3.906 24 F -0.135 7.135 25 C -0.056 4.056 26 Cl -0.043 7.043 27 H 0.294 0.706 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.146 0.854 34 H 0.137 0.863 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 -2.292 3.443 5.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.142 4.142 3 Si 0.741 3.259 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.166 1.166 7 C -0.429 4.429 8 H 0.122 0.878 9 C 0.059 3.941 10 C -0.287 4.287 11 C -0.017 4.017 12 C -0.167 4.167 13 C -0.119 4.119 14 C -0.203 4.203 15 C -0.067 4.067 16 C -0.100 4.100 17 N -0.132 5.132 18 C -0.039 4.039 19 C 0.033 3.967 20 C -0.100 4.100 21 C -0.113 4.113 22 C -0.170 4.170 23 C 0.074 3.926 24 F -0.114 7.114 25 C -0.084 4.084 26 Cl -0.014 7.014 27 H 0.105 0.895 28 H 0.136 0.864 29 H 0.130 0.870 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.164 0.836 34 H 0.154 0.846 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.234 -2.884 3.599 6.261 hybrid contribution -0.312 1.095 -0.731 1.353 sum 3.922 -1.789 2.869 5.178 Atomic orbital electron populations 1.69630 1.08229 1.31405 1.30117 1.26321 0.94873 1.02155 0.90809 0.86223 0.80807 0.78980 0.79879 1.18941 1.21395 1.16640 1.19622 0.92188 0.96466 1.34621 0.87752 1.19189 0.93287 0.90796 0.90873 1.21136 0.94254 1.06749 1.06579 1.19522 0.93778 0.93782 0.94585 1.20843 0.95167 0.99970 1.00747 1.20535 0.94043 0.97989 0.99335 1.20305 0.99234 0.98523 1.02203 1.20540 0.92865 0.97413 0.95923 1.19256 0.93834 0.96020 1.00926 1.67459 1.12807 1.21789 1.11106 1.20653 0.89090 0.96639 0.97496 1.18212 0.95463 0.89114 0.93901 1.21429 0.95232 1.01334 0.92038 1.20964 0.99147 0.91601 0.99568 1.21044 1.01032 0.97435 0.97455 1.17242 1.01353 0.77336 0.96635 1.91489 1.93044 1.31734 1.95101 1.21089 1.01173 0.93275 0.92906 1.98366 1.70936 1.90017 1.42044 0.89466 0.86400 0.87038 0.87542 0.87384 0.86549 0.83589 0.84552 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.74 13.92 55.56 0.77 -16.96 16 2 C 0.08 1.87 5.42 -17.31 -0.09 1.77 16 3 Si 0.92 18.69 24.54 -169.99 -4.17 14.52 16 4 H -0.26 -5.33 6.46 56.52 0.37 -4.97 16 5 H -0.29 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.24 -5.20 7.01 56.52 0.40 -4.80 16 7 C -0.40 -9.34 7.63 -37.90 -0.29 -9.63 16 8 H 0.10 2.51 6.99 -52.48 -0.37 2.15 16 9 C 0.06 1.49 5.26 -104.69 -0.55 0.94 16 10 C -0.26 -6.06 7.12 -38.11 -0.27 -6.33 16 11 C -0.01 -0.32 5.87 -104.98 -0.62 -0.94 16 12 C -0.15 -2.86 9.80 -39.38 -0.39 -3.25 16 13 C -0.10 -1.72 9.91 -40.00 -0.40 -2.11 16 14 C -0.18 -3.09 9.90 -39.95 -0.40 -3.49 16 15 C -0.05 -0.93 9.98 -39.45 -0.39 -1.32 16 16 C 0.02 0.46 6.74 -82.94 -0.56 -0.10 16 17 N -0.43 -9.55 8.86 -4.83 -0.04 -9.59 16 18 C 0.12 2.65 5.98 -80.60 -0.48 2.17 16 19 C 0.03 0.69 5.07 -104.89 -0.53 0.16 16 20 C -0.08 -1.39 8.06 -39.18 -0.32 -1.71 16 21 C -0.09 -1.32 10.03 -39.64 -0.40 -1.72 16 22 C -0.15 -2.10 10.02 -39.42 -0.39 -2.49 16 23 C 0.09 1.57 7.27 -39.44 -0.29 1.28 16 24 F -0.14 -2.21 16.83 2.25 0.04 -2.17 16 25 C -0.06 -1.05 6.34 -39.02 -0.25 -1.30 16 26 Cl -0.04 -0.82 26.71 -51.86 -1.38 -2.21 16 27 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 28 H 0.12 2.67 4.50 -52.49 -0.24 2.43 16 29 H 0.11 1.96 8.06 -52.48 -0.42 1.53 16 30 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 32 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 33 H 0.15 2.52 7.34 -52.49 -0.39 2.13 16 34 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 317.34 15.07 4.78 4.78 Total: -1.00 -25.52 317.34 -9.32 -34.84 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -2.70 Total: 4.87 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -6.61 Total: -28.07 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.73 Total: -26.56 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.17 Total: 14.52 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.38 Total: -2.21 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -25.52 -9.32 -34.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242573528.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.956 kcal (2) G-P(sol) polarization free energy of solvation -25.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds