Wall clock time and date at job start Tue Mar 31 2020 15:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30765 * 1 3 3 Si 1.86792 * 120.00363 * 2 1 4 4 H 1.48497 * 109.47488 * 270.45770 * 3 2 1 5 5 H 1.48497 * 109.47279 * 30.45959 * 3 2 1 6 6 H 1.48506 * 109.47310 * 150.45729 * 3 2 1 7 7 C 1.40094 * 119.99626 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00007 * 342.45011 * 7 2 1 9 9 C 1.40838 * 120.00212 * 162.44421 * 7 2 1 10 10 C 1.40385 * 120.41210 * 330.89469 * 9 7 2 11 11 C 1.40017 * 117.96454 * 179.97438 * 10 9 7 12 12 C 1.40779 * 121.40867 * 180.02562 * 11 10 9 13 13 C 1.36131 * 119.47247 * 179.97438 * 12 11 10 14 14 C 1.39161 * 121.46378 * 359.97438 * 13 12 11 15 15 C 1.36250 * 121.75583 * 0.02562 * 14 13 12 16 16 C 1.40481 * 119.70633 * 359.97438 * 15 14 13 17 17 N 1.33651 * 120.98459 * 180.27614 * 16 15 14 18 18 C 1.31570 * 121.74549 * 180.24059 * 17 16 15 19 19 C 1.47918 * 119.44494 * 179.75789 * 18 17 16 20 20 C 1.39625 * 120.13660 * 129.48713 * 19 18 17 21 21 C 1.37915 * 119.91376 * 179.72002 * 20 19 18 22 22 C 1.38401 * 120.19618 * 0.25899 * 21 20 19 23 23 C 1.38505 * 120.28782 * 0.03948 * 22 21 20 24 24 F 1.35096 * 119.95790 * 180.02562 * 23 22 21 25 25 C 1.38347 * 120.07722 * 359.97438 * 23 22 21 26 26 Cl 1.73598 * 120.09466 * 180.02562 * 25 23 22 27 27 H 0.96998 * 119.99354 * 359.97438 * 1 2 3 28 28 H 1.07997 * 121.01654 * 359.97438 * 10 9 7 29 29 H 1.08005 * 120.26362 * 0.02562 * 12 11 10 30 30 H 1.07995 * 119.26825 * 180.02562 * 13 12 11 31 31 H 1.08009 * 119.12399 * 179.97438 * 14 13 12 32 32 H 1.07998 * 120.14827 * 179.97438 * 15 14 13 33 33 H 1.07997 * 120.04511 * 359.97438 * 20 19 18 34 34 H 1.07995 * 119.90205 * 180.27599 * 21 20 19 35 35 H 1.07996 * 119.85343 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6176 0.0000 4 1 2.4796 2.0519 -1.4000 5 1 1.4442 2.6498 0.7097 6 1 3.5441 1.4372 0.6904 7 6 2.0080 -1.2133 -0.0005 8 1 1.5057 -2.1270 0.2811 9 6 3.3672 -1.2417 -0.3684 10 6 3.8780 -0.2990 -1.2747 11 6 5.2368 -0.3741 -1.6041 12 6 5.8247 0.5346 -2.5044 13 6 7.1499 0.4256 -2.7962 14 6 7.9407 -0.5659 -2.2234 15 6 7.4287 -1.4736 -1.3457 16 6 6.0680 -1.4177 -1.0009 17 7 5.5403 -2.2918 -0.1385 18 6 4.2671 -2.2561 0.1914 19 6 3.7354 -3.2519 1.1472 20 6 2.9854 -2.8354 2.2488 21 6 2.4870 -3.7683 3.1339 22 6 2.7325 -5.1159 2.9364 23 6 3.4807 -5.5378 1.8499 24 9 3.7159 -6.8550 1.6633 25 6 3.9866 -4.6120 0.9549 26 17 4.9238 -5.1403 -0.4075 27 1 -0.4849 0.8401 0.0004 28 1 3.2423 0.4609 -1.7046 29 1 5.2294 1.3125 -2.9592 30 1 7.5977 1.1247 -3.4869 31 1 8.9881 -0.6179 -2.4822 32 1 8.0661 -2.2327 -0.9169 33 1 2.7923 -1.7844 2.4053 34 1 1.9031 -3.4462 3.9834 35 1 2.3392 -5.8417 3.6328 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242573528.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:12 Heat of formation + Delta-G solvation = 3.140390 kcal Electronic energy + Delta-G solvation = -24345.050206 eV Core-core repulsion = 20632.934672 eV Total energy + Delta-G solvation = -3712.115534 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.052 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.97104 -41.05432 -39.84750 -37.61448 -37.41345 -35.96031 -33.98964 -32.92912 -31.66274 -31.18028 -29.96131 -27.30723 -25.50534 -23.93680 -23.33627 -22.75128 -22.45650 -20.02224 -18.97616 -18.13922 -17.77561 -17.58312 -17.36012 -16.82994 -16.71915 -16.32965 -15.39309 -15.34072 -15.16662 -14.97511 -14.65117 -14.43549 -14.25066 -14.10698 -13.80925 -13.78049 -13.07524 -13.01310 -12.83863 -12.55629 -12.50443 -12.25854 -12.22911 -12.05998 -11.83621 -11.66851 -11.46499 -10.87239 -10.23086 -9.89683 -9.66957 -9.25414 -9.08459 -8.92777 -6.56692 -0.48116 0.03775 0.06490 0.33238 1.10384 1.19213 1.29947 1.33180 1.50621 2.01239 2.04376 2.51475 2.80497 2.98974 3.37034 3.52583 3.82076 3.89105 3.92543 4.14150 4.19952 4.30906 4.33864 4.48035 4.52350 4.56046 4.71879 4.84830 4.91748 5.00274 5.16659 5.18999 5.26989 5.36319 5.40560 5.52146 5.69580 5.74957 5.78308 5.82189 6.08516 6.14977 6.45173 6.56426 7.26774 7.94142 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.010265 B = 0.006562 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.149090 B = 4266.202660 C = 6505.872814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.064 3.936 3 Si 0.956 3.044 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.420 4.420 8 H 0.085 0.915 9 C 0.049 3.951 10 C -0.280 4.280 11 C -0.041 4.041 12 C -0.164 4.164 13 C -0.089 4.089 14 C -0.161 4.161 15 C -0.068 4.068 16 C -0.001 4.001 17 N -0.438 5.438 18 C 0.110 3.890 19 C 0.005 3.995 20 C -0.091 4.091 21 C -0.078 4.078 22 C -0.129 4.129 23 C 0.086 3.914 24 F -0.134 7.134 25 C -0.074 4.074 26 Cl -0.058 7.058 27 H 0.303 0.697 28 H 0.116 0.884 29 H 0.125 0.875 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.129 0.871 33 H 0.138 0.862 34 H 0.179 0.821 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.148 -1.944 3.922 6.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.158 4.158 3 Si 0.781 3.219 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.188 1.188 7 C -0.447 4.447 8 H 0.103 0.897 9 C 0.044 3.956 10 C -0.305 4.305 11 C -0.043 4.043 12 C -0.182 4.182 13 C -0.107 4.107 14 C -0.181 4.181 15 C -0.087 4.087 16 C -0.122 4.122 17 N -0.144 5.144 18 C -0.047 4.047 19 C 0.003 3.997 20 C -0.110 4.110 21 C -0.096 4.096 22 C -0.148 4.148 23 C 0.066 3.934 24 F -0.113 7.113 25 C -0.103 4.103 26 Cl -0.029 7.029 27 H 0.115 0.885 28 H 0.133 0.867 29 H 0.143 0.857 30 H 0.168 0.832 31 H 0.168 0.832 32 H 0.147 0.853 33 H 0.155 0.845 34 H 0.196 0.804 35 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 5.607 -2.536 4.076 7.381 hybrid contribution -0.506 0.937 -0.926 1.411 sum 5.100 -1.599 3.150 6.205 Atomic orbital electron populations 1.69624 1.08755 1.32408 1.31749 1.26673 0.95211 1.03463 0.90430 0.85618 0.79205 0.77430 0.79687 1.18820 1.19502 1.18812 1.19437 0.92420 0.96188 1.36694 0.89686 1.19382 0.93542 0.91531 0.91144 1.21258 0.95107 1.07056 1.07051 1.19846 0.93703 0.94979 0.95815 1.21111 0.96654 0.99941 1.00539 1.21036 0.92958 0.98003 0.98677 1.20838 1.01170 0.96519 0.99570 1.20819 0.91822 0.98889 0.97146 1.19825 0.95300 0.96024 1.01037 1.67535 1.12919 1.22265 1.11694 1.21006 0.89012 0.96938 0.97773 1.18279 0.97424 0.89125 0.94854 1.21526 0.95383 1.01838 0.92289 1.21403 0.97738 0.90985 0.99464 1.21522 0.98677 0.98181 0.96440 1.17460 1.01792 0.77048 0.97064 1.91489 1.93113 1.31527 1.95178 1.21236 1.02150 0.93563 0.93349 1.98343 1.71471 1.90026 1.43052 0.88544 0.86687 0.85727 0.83221 0.83203 0.85318 0.84458 0.80371 0.80235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.83 13.92 21.85 0.30 -37.53 16 2 C 0.06 2.97 5.42 85.30 0.46 3.44 16 3 Si 0.96 39.31 24.54 68.60 1.68 40.99 16 4 H -0.26 -10.59 6.46 99.48 0.64 -9.94 16 5 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 6 H -0.26 -11.60 7.01 99.48 0.70 -10.90 16 7 C -0.42 -20.56 7.63 23.36 0.18 -20.38 16 8 H 0.09 4.37 6.99 -2.91 -0.02 4.35 16 9 C 0.05 2.41 5.26 -19.91 -0.10 2.31 16 10 C -0.28 -13.39 7.12 23.22 0.17 -13.23 16 11 C -0.04 -1.86 5.87 -20.09 -0.12 -1.98 16 12 C -0.16 -6.07 9.80 22.40 0.22 -5.85 16 13 C -0.09 -2.69 9.91 22.00 0.22 -2.47 16 14 C -0.16 -4.86 9.90 22.03 0.22 -4.64 16 15 C -0.07 -2.50 9.98 22.35 0.22 -2.28 16 16 C 0.00 -0.04 6.74 41.55 0.28 0.24 16 17 N -0.44 -20.29 8.86 -169.19 -1.50 -21.79 16 18 C 0.11 5.14 5.98 43.96 0.26 5.41 16 19 C 0.00 0.20 5.07 -20.04 -0.10 0.10 16 20 C -0.09 -3.17 8.06 22.53 0.18 -2.98 16 21 C -0.08 -2.01 10.03 22.23 0.22 -1.78 16 22 C -0.13 -3.24 10.02 22.37 0.22 -3.01 16 23 C 0.09 2.79 7.27 22.36 0.16 2.95 16 24 F -0.13 -4.26 16.83 44.97 0.76 -3.50 16 25 C -0.07 -2.86 6.34 22.63 0.14 -2.72 16 26 Cl -0.06 -2.29 26.71 -2.72 -0.07 -2.36 16 27 H 0.30 12.76 8.29 -92.71 -0.77 11.99 16 28 H 0.12 5.39 4.50 -2.91 -0.01 5.38 16 29 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 30 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 31 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 32 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 33 H 0.14 4.94 7.34 -2.91 -0.02 4.92 16 34 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.18 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -58.75 317.34 5.09 -53.65 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 1.08 Total: 17.42 kcal Atomic # 6 Polarization: -49.72 SS G_CDS: 2.84 Total: -46.89 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -1.20 Total: -59.32 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.76 Total: -3.50 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 1.68 Total: 40.99 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -0.07 Total: -2.36 kcal Total: -58.75 5.09 -53.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242573528.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.795 kcal (2) G-P(sol) polarization free energy of solvation -58.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds