Wall clock time and date at job start Tue Mar 31 2020 14:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39096 * 120.56678 * 329.76587 * 3 2 1 5 5 C 1.39358 * 119.80300 * 180.28138 * 4 3 2 6 6 C 1.48046 * 119.49768 * 179.70348 * 5 4 3 7 7 C 1.39681 * 120.06498 * 359.75229 * 6 5 4 8 8 C 1.38155 * 120.14928 * 179.71273 * 7 6 5 9 9 Cl 1.73605 * 119.86214 * 180.27422 * 8 7 6 10 10 C 1.38228 * 120.27813 * 0.55957 * 8 7 6 11 11 C 1.39712 * 120.11991 * 359.71852 * 10 8 7 12 12 C 1.47751 * 120.07660 * 180.02562 * 11 10 8 13 13 O 1.21461 * 120.00423 * 179.97438 * 12 11 10 14 14 O 1.34708 * 119.99773 * 359.97438 * 12 11 10 15 15 C 1.39311 * 120.06548 * 180.02562 * 6 5 4 16 16 C 1.39966 * 121.00891 * 359.73156 * 5 4 3 17 17 C 1.36021 * 121.18751 * 359.97438 * 16 5 4 18 18 C 1.41027 * 120.10996 * 0.02562 * 17 16 5 19 19 C 1.40457 * 120.48933 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00150 * 154.64487 * 19 18 17 21 21 C 1.40310 * 120.00375 * 334.63794 * 19 18 17 22 22 N 1.30635 * 119.99506 * 334.62240 * 21 19 18 23 23 Si 1.86802 * 120.00104 * 154.61645 * 21 19 18 24 24 H 1.48500 * 109.46614 * 180.02562 * 23 21 19 25 25 H 1.48494 * 109.47176 * 300.00364 * 23 21 19 26 26 H 1.48499 * 109.46822 * 60.00363 * 23 21 19 27 27 H 1.07990 * 120.10143 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.92185 * 359.97298 * 7 6 5 29 29 H 1.07993 * 119.94494 * 179.73796 * 10 8 7 30 30 H 0.96702 * 117.00121 * 179.97438 * 14 12 11 31 31 H 1.08006 * 120.13289 * 0.02739 * 15 6 5 32 32 H 1.07993 * 119.40734 * 180.02562 * 16 5 4 33 33 H 1.08010 * 119.94229 * 179.97438 * 17 16 5 34 34 H 0.96991 * 120.00327 * 354.17658 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2759 -1.0338 0.6031 5 6 4.6693 -1.0141 0.5988 6 6 5.4158 -2.1153 1.2485 7 6 4.7248 -3.1613 1.8643 8 6 5.4197 -4.1928 2.4659 9 17 4.5532 -5.4928 3.2229 10 6 6.8019 -4.1911 2.4727 11 6 7.5047 -3.1476 1.8651 12 6 8.9822 -3.1470 1.8725 13 8 9.5919 -2.2394 1.3435 14 8 9.6532 -4.1532 2.4659 15 6 6.8089 -2.1072 1.2517 16 6 5.3739 0.0310 -0.0097 17 6 4.7230 1.0599 -0.6163 18 6 3.3132 1.0889 -0.6407 19 6 2.6330 2.1477 -1.2645 20 1 1.6338 1.9975 -1.6459 21 6 3.2514 3.4007 -1.3920 22 7 4.1874 3.7555 -0.5526 23 14 2.7364 4.5614 -2.7620 24 1 3.5359 5.8101 -2.6794 25 1 2.9701 3.9106 -4.0761 26 1 1.2943 4.8860 -2.6198 27 1 2.7472 -1.8472 1.0775 28 1 3.6447 -3.1659 1.8665 29 1 7.3397 -4.9979 2.9481 30 1 10.6190 -4.1094 2.4448 31 1 7.3476 -1.2980 0.7810 32 1 6.4537 0.0200 0.0020 33 1 5.2868 1.8563 -1.0794 34 1 4.3964 3.1909 0.2079 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243324964.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:43 Heat of formation + Delta-G solvation = -44.735816 kcal Electronic energy + Delta-G solvation = -23054.787649 eV Core-core repulsion = 19328.223257 eV Total energy + Delta-G solvation = -3726.564392 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.045 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.49130 -39.13330 -37.86891 -36.50410 -36.16684 -35.39019 -34.72015 -31.98120 -31.25160 -30.09818 -29.00935 -25.83252 -25.00815 -22.95064 -22.48520 -21.36223 -20.43405 -18.74199 -18.29374 -17.74977 -16.69259 -16.17538 -15.73282 -15.48735 -15.07382 -14.91482 -14.44494 -14.06478 -13.83261 -13.53026 -13.38611 -13.05515 -12.93406 -12.59234 -12.19744 -11.94853 -11.87621 -11.81228 -11.69576 -11.51128 -11.43147 -11.21717 -11.07107 -11.01661 -10.67993 -10.60517 -10.12054 -10.08978 -9.63359 -9.18086 -8.84461 -8.20785 -7.88792 -7.59601 -5.03954 0.60500 1.07449 1.93553 2.06026 2.19913 2.62216 2.88115 2.90477 2.99471 3.11194 3.60736 3.63201 3.67316 4.06475 4.20113 4.75480 4.84682 5.05333 5.07193 5.16263 5.23929 5.35080 5.47345 5.60835 5.78738 5.96949 6.13060 6.20521 6.28171 6.31693 6.41443 6.56433 6.70252 6.78274 7.05762 7.16428 7.22355 7.37143 7.51156 7.64435 7.75493 8.04981 8.15853 8.56811 9.38312 Molecular weight = 327.04amu Principal moments of inertia in cm(-1) A = 0.013797 B = 0.003343 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.971533 B = 8372.792047 C =10293.919337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C 0.295 3.705 3 C -0.184 4.184 4 C 0.016 3.984 5 C -0.224 4.224 6 C 0.030 3.970 7 C -0.106 4.106 8 C -0.031 4.031 9 Cl -0.074 7.074 10 C -0.096 4.096 11 C -0.105 4.105 12 C 0.531 3.469 13 O -0.510 6.510 14 O -0.513 6.513 15 C -0.075 4.075 16 C -0.034 4.034 17 C -0.214 4.214 18 C 0.126 3.874 19 C -0.448 4.448 20 H 0.090 0.910 21 C 0.033 3.967 22 N -0.745 5.745 23 Si 1.067 2.933 24 H -0.266 1.266 25 H -0.266 1.266 26 H -0.269 1.269 27 H 0.107 0.893 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.413 0.587 31 H 0.144 0.856 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.387 -9.688 3.806 13.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.176 5.176 2 C -0.015 4.015 3 C -0.190 4.190 4 C -0.005 4.005 5 C -0.225 4.225 6 C 0.029 3.971 7 C -0.125 4.125 8 C -0.057 4.057 9 Cl -0.045 7.045 10 C -0.115 4.115 11 C -0.107 4.107 12 C 0.375 3.625 13 O -0.399 6.399 14 O -0.325 6.325 15 C -0.094 4.094 16 C -0.053 4.053 17 C -0.233 4.233 18 C 0.120 3.880 19 C -0.473 4.473 20 H 0.108 0.892 21 C -0.195 4.195 22 N -0.364 5.364 23 Si 0.888 3.112 24 H -0.190 1.190 25 H -0.191 1.191 26 H -0.194 1.194 27 H 0.125 0.875 28 H 0.156 0.844 29 H 0.158 0.842 30 H 0.271 0.729 31 H 0.161 0.839 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.672 -8.081 3.114 10.933 hybrid contribution 0.741 -1.684 0.864 2.032 sum 7.413 -9.765 3.978 12.889 Atomic orbital electron populations 1.81058 1.12562 1.10894 1.13109 1.25677 0.92608 0.91588 0.91613 1.16653 0.83373 1.03316 1.15642 1.20655 0.92689 0.94339 0.92831 1.17509 0.91742 0.98491 1.14806 1.18689 0.91646 0.93041 0.93682 1.21365 1.00896 0.92603 0.97616 1.20612 0.92020 0.91872 1.01232 1.98362 1.76822 1.48657 1.80672 1.21054 0.91924 0.98669 0.99880 1.18734 0.88575 0.98075 1.05299 1.20869 0.88759 0.78631 0.74251 1.90900 1.69949 1.36228 1.42864 1.84568 1.26745 1.48242 1.72902 1.21430 0.93553 0.97209 0.97165 1.20461 0.98132 0.92541 0.94173 1.20789 0.93503 1.01138 1.07837 1.18523 0.91491 0.90524 0.87466 1.21056 1.03373 0.95905 1.26942 0.89180 1.27511 0.92189 0.98764 1.00990 1.70407 1.19466 1.38484 1.08054 0.83580 0.77640 0.75679 0.74340 1.19030 1.19133 1.19396 0.87550 0.84430 0.84200 0.72892 0.83888 0.87832 0.86502 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.33 18.54 41.84 0.78 -10.55 16 2 C 0.30 6.48 14.30 -22.47 -0.32 6.16 16 3 C -0.18 -3.88 5.93 -104.26 -0.62 -4.50 16 4 C 0.02 0.29 9.12 -38.85 -0.35 -0.06 16 5 C -0.22 -4.01 5.88 -104.81 -0.62 -4.62 16 6 C 0.03 0.47 5.87 -104.94 -0.62 -0.15 16 7 C -0.11 -1.51 9.19 -39.07 -0.36 -1.87 16 8 C -0.03 -0.40 6.31 -39.62 -0.25 -0.65 16 9 Cl -0.07 -0.87 28.94 -51.86 -1.50 -2.37 16 10 C -0.10 -1.20 9.39 -39.03 -0.37 -1.57 16 11 C -0.11 -1.43 5.87 -105.03 -0.62 -2.04 16 12 C 0.53 6.78 8.27 34.62 0.29 7.06 16 13 O -0.51 -7.88 17.13 -19.24 -0.33 -8.21 16 14 O -0.51 -4.68 12.67 -40.52 -0.51 -5.19 16 15 C -0.08 -1.12 8.96 -38.76 -0.35 -1.47 16 16 C -0.03 -0.63 9.30 -39.73 -0.37 -1.00 16 17 C -0.21 -4.39 7.88 -39.32 -0.31 -4.70 16 18 C 0.13 2.77 5.46 -104.62 -0.57 2.20 16 19 C -0.45 -10.06 8.48 -37.97 -0.32 -10.38 16 20 H 0.09 2.06 7.45 -52.49 -0.39 1.67 16 21 C 0.03 0.71 4.95 -17.28 -0.09 0.62 16 22 N -0.74 -16.38 12.30 55.57 0.68 -15.70 16 23 Si 1.07 18.24 30.01 -169.99 -5.10 13.14 16 24 H -0.27 -4.51 7.11 56.52 0.40 -4.11 16 25 H -0.27 -4.39 7.11 56.52 0.40 -3.99 16 26 H -0.27 -4.50 7.11 56.52 0.40 -4.10 16 27 H 0.11 1.73 6.12 -52.49 -0.32 1.41 16 28 H 0.14 1.85 6.13 -52.48 -0.32 1.53 16 29 H 0.14 1.50 7.60 -52.49 -0.40 1.10 16 30 H 0.41 1.81 9.11 45.56 0.42 2.23 16 31 H 0.14 2.15 5.71 -52.48 -0.30 1.85 16 32 H 0.10 1.71 6.08 -52.49 -0.32 1.39 16 33 H 0.12 2.44 6.48 -52.48 -0.34 2.10 16 34 H 0.31 6.90 6.68 -40.82 -0.27 6.63 16 LS Contribution 327.44 15.07 4.93 4.93 Total: -1.00 -25.30 327.44 -7.93 -33.24 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -1.04 Total: 7.70 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -5.84 Total: -16.97 kcal Atomic # 7 Polarization: -27.71 SS G_CDS: 1.46 Total: -26.25 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.84 Total: -13.41 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.10 Total: 13.14 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -25.30 -7.93 -33.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243324964.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.500 kcal (2) G-P(sol) polarization free energy of solvation -25.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds