Wall clock time and date at job start Tue Mar 31 2020 14:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39096 * 120.56678 * 329.76587 * 3 2 1 5 5 C 1.39358 * 119.80300 * 180.28138 * 4 3 2 6 6 C 1.48046 * 119.49768 * 179.70348 * 5 4 3 7 7 C 1.39681 * 120.06498 * 359.75229 * 6 5 4 8 8 C 1.38155 * 120.14928 * 179.71273 * 7 6 5 9 9 Cl 1.73605 * 119.86214 * 180.27422 * 8 7 6 10 10 C 1.38228 * 120.27813 * 0.55957 * 8 7 6 11 11 C 1.39712 * 120.11991 * 359.71852 * 10 8 7 12 12 C 1.47751 * 120.07660 * 180.02562 * 11 10 8 13 13 O 1.21461 * 120.00423 * 179.97438 * 12 11 10 14 14 O 1.34708 * 119.99773 * 359.97438 * 12 11 10 15 15 C 1.39311 * 120.06548 * 180.02562 * 6 5 4 16 16 C 1.39966 * 121.00891 * 359.73156 * 5 4 3 17 17 C 1.36021 * 121.18751 * 359.97438 * 16 5 4 18 18 C 1.41027 * 120.10996 * 0.02562 * 17 16 5 19 19 C 1.40457 * 120.48933 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00150 * 154.64487 * 19 18 17 21 21 C 1.40310 * 120.00375 * 334.63794 * 19 18 17 22 22 N 1.30635 * 119.99506 * 334.62240 * 21 19 18 23 23 Si 1.86802 * 120.00104 * 154.61645 * 21 19 18 24 24 H 1.48500 * 109.46614 * 180.02562 * 23 21 19 25 25 H 1.48494 * 109.47176 * 300.00364 * 23 21 19 26 26 H 1.48499 * 109.46822 * 60.00363 * 23 21 19 27 27 H 1.07990 * 120.10143 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.92185 * 359.97298 * 7 6 5 29 29 H 1.07993 * 119.94494 * 179.73796 * 10 8 7 30 30 H 0.96702 * 117.00121 * 179.97438 * 14 12 11 31 31 H 1.08006 * 120.13289 * 0.02739 * 15 6 5 32 32 H 1.07993 * 119.40734 * 180.02562 * 16 5 4 33 33 H 1.08010 * 119.94229 * 179.97438 * 17 16 5 34 34 H 0.96991 * 120.00327 * 354.17658 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2759 -1.0338 0.6031 5 6 4.6693 -1.0141 0.5988 6 6 5.4158 -2.1153 1.2485 7 6 4.7248 -3.1613 1.8643 8 6 5.4197 -4.1928 2.4659 9 17 4.5532 -5.4928 3.2229 10 6 6.8019 -4.1911 2.4727 11 6 7.5047 -3.1476 1.8651 12 6 8.9822 -3.1470 1.8725 13 8 9.5919 -2.2394 1.3435 14 8 9.6532 -4.1532 2.4659 15 6 6.8089 -2.1072 1.2517 16 6 5.3739 0.0310 -0.0097 17 6 4.7230 1.0599 -0.6163 18 6 3.3132 1.0889 -0.6407 19 6 2.6330 2.1477 -1.2645 20 1 1.6338 1.9975 -1.6459 21 6 3.2514 3.4007 -1.3920 22 7 4.1874 3.7555 -0.5526 23 14 2.7364 4.5614 -2.7620 24 1 3.5359 5.8101 -2.6794 25 1 2.9701 3.9106 -4.0761 26 1 1.2943 4.8860 -2.6198 27 1 2.7472 -1.8472 1.0775 28 1 3.6447 -3.1659 1.8665 29 1 7.3397 -4.9979 2.9481 30 1 10.6190 -4.1094 2.4448 31 1 7.3476 -1.2980 0.7810 32 1 6.4537 0.0200 0.0020 33 1 5.2868 1.8563 -1.0794 34 1 4.3964 3.1909 0.2079 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243324964.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:42 Heat of formation + Delta-G solvation = -55.389956 kcal Electronic energy + Delta-G solvation = -23055.249647 eV Core-core repulsion = 19328.223257 eV Total energy + Delta-G solvation = -3727.026390 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.045 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.52177 -40.37798 -39.25545 -37.54096 -37.11566 -37.07839 -36.21220 -33.31784 -32.52572 -31.53140 -30.44294 -27.34300 -26.12041 -24.36631 -23.83064 -22.67197 -21.64428 -20.30313 -19.46411 -18.80899 -18.03321 -17.36416 -16.81258 -16.70047 -16.47537 -16.15395 -15.74743 -15.43259 -15.24791 -14.82728 -14.50629 -14.42857 -14.37849 -14.19452 -13.78771 -13.53704 -13.21094 -13.04797 -12.92057 -12.73402 -12.64781 -12.50812 -12.30333 -12.14370 -12.00299 -11.71988 -11.60522 -11.57966 -11.13159 -10.52538 -9.95048 -9.79014 -9.47847 -9.07985 -6.68563 -0.49263 -0.11895 0.31794 0.86223 1.03022 1.41350 1.50031 1.66266 1.78847 1.92563 1.99685 2.19992 2.22646 2.52625 2.75062 3.40648 3.47324 3.65934 3.80070 3.98223 4.09269 4.14754 4.26679 4.29626 4.45229 4.73283 4.82434 4.83950 4.99484 5.10400 5.19807 5.22148 5.43413 5.47708 5.53470 5.57909 5.70216 5.82789 5.95559 6.07688 6.43296 6.55535 6.84913 6.94283 7.74579 Molecular weight = 327.04amu Principal moments of inertia in cm(-1) A = 0.013797 B = 0.003343 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.971533 B = 8372.792047 C =10293.919337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C 0.302 3.698 3 C -0.205 4.205 4 C 0.014 3.986 5 C -0.206 4.206 6 C 0.009 3.991 7 C -0.098 4.098 8 C -0.036 4.036 9 Cl -0.057 7.057 10 C -0.071 4.071 11 C -0.113 4.113 12 C 0.539 3.461 13 O -0.542 6.542 14 O -0.499 6.499 15 C -0.075 4.075 16 C -0.031 4.031 17 C -0.225 4.225 18 C 0.114 3.886 19 C -0.489 4.489 20 H 0.074 0.926 21 C 0.011 3.989 22 N -0.766 5.766 23 Si 1.109 2.891 24 H -0.262 1.262 25 H -0.257 1.257 26 H -0.265 1.265 27 H 0.131 0.869 28 H 0.146 0.854 29 H 0.165 0.835 30 H 0.436 0.564 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.984 -12.212 4.900 16.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.200 5.200 2 C -0.007 4.007 3 C -0.210 4.210 4 C -0.006 4.006 5 C -0.208 4.208 6 C 0.008 3.992 7 C -0.116 4.116 8 C -0.063 4.063 9 Cl -0.028 7.028 10 C -0.090 4.090 11 C -0.114 4.114 12 C 0.384 3.616 13 O -0.434 6.434 14 O -0.313 6.313 15 C -0.094 4.094 16 C -0.050 4.050 17 C -0.244 4.244 18 C 0.108 3.892 19 C -0.515 4.515 20 H 0.092 0.908 21 C -0.212 4.212 22 N -0.386 5.386 23 Si 0.925 3.075 24 H -0.186 1.186 25 H -0.181 1.181 26 H -0.190 1.190 27 H 0.149 0.851 28 H 0.163 0.837 29 H 0.183 0.817 30 H 0.298 0.702 31 H 0.156 0.844 32 H 0.142 0.858 33 H 0.126 0.874 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.293 -10.651 4.233 14.147 hybrid contribution 0.466 -1.328 0.759 1.598 sum 8.759 -11.978 4.991 15.656 Atomic orbital electron populations 1.81033 1.13072 1.11738 1.14135 1.25881 0.92824 0.90977 0.91038 1.16841 0.83054 1.04320 1.16821 1.20887 0.93043 0.94338 0.92365 1.17771 0.91711 0.98437 1.12846 1.18519 0.91933 0.93273 0.95466 1.21475 1.01400 0.92198 0.96545 1.20659 0.92406 0.92081 1.01158 1.98378 1.76531 1.47644 1.80254 1.21346 0.91739 0.98249 0.97643 1.18828 0.89439 0.97938 1.05240 1.20650 0.88447 0.78665 0.73788 1.90904 1.70463 1.37633 1.44407 1.84502 1.28801 1.46373 1.71604 1.21436 0.93291 0.97600 0.97042 1.20722 0.99294 0.91899 0.93111 1.20751 0.93031 1.01778 1.08864 1.18773 0.92279 0.90807 0.87344 1.21043 1.03312 0.97147 1.29998 0.90768 1.28533 0.91471 0.99406 1.01784 1.70492 1.21147 1.38452 1.08491 0.83075 0.77473 0.74299 0.72624 1.18591 1.18098 1.18961 0.85097 0.83668 0.81746 0.70179 0.84395 0.85810 0.87377 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -24.17 18.54 19.01 0.35 -23.82 16 2 C 0.30 13.56 14.30 88.33 1.26 14.82 16 3 C -0.20 -8.78 5.93 -19.63 -0.12 -8.90 16 4 C 0.01 0.52 9.12 22.75 0.21 0.72 16 5 C -0.21 -7.15 5.88 -19.99 -0.12 -7.27 16 6 C 0.01 0.25 5.87 -20.07 -0.12 0.13 16 7 C -0.10 -2.49 9.19 22.60 0.21 -2.28 16 8 C -0.04 -0.82 6.31 22.25 0.14 -0.68 16 9 Cl -0.06 -1.14 28.94 -2.72 -0.08 -1.22 16 10 C -0.07 -1.48 9.39 22.62 0.21 -1.26 16 11 C -0.11 -2.71 5.87 -20.13 -0.12 -2.82 16 12 C 0.54 12.12 8.27 70.34 0.58 12.70 16 13 O -0.54 -15.65 17.13 19.96 0.34 -15.31 16 14 O -0.50 -7.05 12.67 -56.18 -0.71 -7.76 16 15 C -0.08 -2.09 8.96 22.80 0.20 -1.88 16 16 C -0.03 -1.16 9.30 22.17 0.21 -0.95 16 17 C -0.23 -9.52 7.88 22.44 0.18 -9.35 16 18 C 0.11 5.20 5.46 -19.86 -0.11 5.09 16 19 C -0.49 -23.15 8.48 23.32 0.20 -22.95 16 20 H 0.07 3.62 7.45 -2.91 -0.02 3.60 16 21 C 0.01 0.50 4.95 85.37 0.42 0.92 16 22 N -0.77 -35.14 12.30 21.89 0.27 -34.87 16 23 Si 1.11 37.79 30.01 68.60 2.06 39.84 16 24 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 25 H -0.26 -8.25 7.11 99.48 0.71 -7.54 16 26 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 27 H 0.13 4.03 6.12 -2.92 -0.02 4.01 16 28 H 0.15 3.46 6.13 -2.91 -0.02 3.44 16 29 H 0.17 2.66 7.60 -2.91 -0.02 2.64 16 30 H 0.44 2.05 9.11 -74.06 -0.67 1.38 16 31 H 0.14 3.95 5.71 -2.91 -0.02 3.93 16 32 H 0.12 4.00 6.08 -2.91 -0.02 3.98 16 33 H 0.11 4.72 6.48 -2.91 -0.02 4.70 16 34 H 0.30 14.00 6.68 -92.72 -0.62 13.38 16 Total: -1.00 -55.71 327.44 6.17 -49.54 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.69 Total: 17.55 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 3.24 Total: -23.96 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.62 Total: -58.69 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.37 Total: -23.07 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.06 Total: 39.84 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.22 kcal Total: -55.71 6.17 -49.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243324964.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.851 kcal (2) G-P(sol) polarization free energy of solvation -55.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds