Wall clock time and date at job start Tue Mar 31 2020 15:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30763 * 1 3 3 Si 1.86795 * 120.00086 * 2 1 4 4 H 1.48504 * 109.46776 * 266.10946 * 3 2 1 5 5 H 1.48498 * 109.46941 * 26.10518 * 3 2 1 6 6 H 1.48498 * 109.47510 * 146.10977 * 3 2 1 7 7 C 1.40100 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99984 * 344.52304 * 7 2 1 9 9 C 1.40832 * 119.99872 * 164.51641 * 7 2 1 10 10 C 1.40385 * 120.41850 * 327.65594 * 9 7 2 11 11 C 1.40014 * 117.96564 * 179.97438 * 10 9 7 12 12 C 1.40786 * 121.39442 * 179.97438 * 11 10 9 13 13 C 1.36127 * 119.47031 * 180.02562 * 12 11 10 14 14 C 1.39172 * 121.46066 * 359.97438 * 13 12 11 15 15 C 1.36253 * 121.75597 * 0.02562 * 14 13 12 16 16 C 1.40482 * 119.70640 * 359.97438 * 15 14 13 17 17 N 1.33650 * 120.98984 * 179.97438 * 16 15 14 18 18 C 1.31578 * 121.74470 * 180.02562 * 17 16 15 19 19 C 1.47908 * 119.44474 * 179.97438 * 18 17 16 20 20 C 1.39585 * 120.14112 * 128.65684 * 19 18 17 21 21 C 1.38136 * 119.84156 * 179.79091 * 20 19 18 22 22 F 1.35101 * 119.93696 * 180.20614 * 21 20 19 23 23 C 1.38634 * 120.12202 * 0.48425 * 21 20 19 24 24 C 1.38275 * 120.28133 * 359.74191 * 23 21 20 25 25 C 1.38118 * 120.16113 * 0.02909 * 24 23 21 26 26 Cl 1.73603 * 120.06357 * 180.02562 * 25 24 23 27 27 H 0.96996 * 119.99906 * 0.02562 * 1 2 3 28 28 H 1.08007 * 121.01359 * 359.94850 * 10 9 7 29 29 H 1.07996 * 120.26685 * 0.04839 * 12 11 10 30 30 H 1.07996 * 119.27371 * 180.02562 * 13 12 11 31 31 H 1.07998 * 119.11736 * 180.02562 * 14 13 12 32 32 H 1.08000 * 120.14278 * 180.27568 * 15 14 13 33 33 H 1.08001 * 120.08079 * 0.02562 * 20 19 18 34 34 H 1.07995 * 119.85318 * 179.72266 * 23 21 20 35 35 H 1.08003 * 119.91976 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.5714 1.9988 -1.3969 5 1 1.4003 2.6750 0.6161 6 1 3.4956 1.4653 0.7807 7 6 2.0081 -1.2133 0.0005 8 1 1.4975 -2.1316 0.2505 9 6 3.3781 -1.2356 -0.3250 10 6 3.9037 -0.3201 -1.2505 11 6 5.2728 -0.3877 -1.5358 12 6 5.8754 0.4946 -2.4526 13 6 7.2099 0.3937 -2.7010 14 6 7.9963 -0.5642 -2.0677 15 6 7.4702 -1.4452 -1.1713 16 6 6.0992 -1.3957 -0.8690 17 7 5.5562 -2.2478 0.0058 18 6 4.2741 -2.2150 0.2996 19 6 3.7267 -3.1828 1.2750 20 6 2.9569 -2.7351 2.3499 21 6 2.4451 -3.6447 3.2548 22 9 1.6963 -3.2139 4.2936 23 6 2.7031 -4.9982 3.1023 24 6 3.4689 -5.4468 2.0420 25 6 3.9826 -4.5480 1.1276 26 17 4.9432 -5.1141 -0.2030 27 1 -0.4850 0.8400 -0.0004 28 1 3.2712 0.4137 -1.7281 29 1 5.2836 1.2458 -2.9544 30 1 7.6690 1.0724 -3.4045 31 1 9.0515 -0.6103 -2.2928 32 1 8.1055 -2.1752 -0.6917 33 1 2.7588 -1.6804 2.4718 34 1 2.3046 -5.7051 3.8148 35 1 3.6667 -6.5026 1.9290 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245131844.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:15 Heat of formation + Delta-G solvation = 1.630637 kcal Electronic energy + Delta-G solvation = -24340.020191 eV Core-core repulsion = 20627.839189 eV Total energy + Delta-G solvation = -3712.181002 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.052 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.92699 -41.07420 -39.89051 -37.65165 -37.25712 -35.95083 -34.00204 -33.09244 -31.49750 -31.30557 -29.94774 -27.32201 -25.49968 -24.06707 -23.30654 -22.75827 -22.43272 -20.02962 -18.95437 -18.19507 -17.81922 -17.55020 -17.36854 -16.85753 -16.61832 -16.35595 -15.43948 -15.36336 -15.09744 -14.89284 -14.62565 -14.40279 -14.37125 -14.18018 -13.89894 -13.80695 -13.41780 -13.04895 -12.83037 -12.54541 -12.39404 -12.21802 -12.13370 -12.07259 -11.85561 -11.63692 -11.48381 -10.88793 -10.30541 -10.00348 -9.61544 -9.22598 -9.08308 -8.93383 -6.59576 -0.49722 -0.01094 0.06735 0.31665 1.15811 1.20551 1.25645 1.28969 1.48259 1.98284 2.01752 2.44951 2.78110 3.04383 3.40096 3.47362 3.77137 3.85350 3.96116 4.05895 4.19625 4.22843 4.33028 4.45358 4.51471 4.56407 4.73582 4.84199 4.89631 4.98977 5.03255 5.12888 5.22648 5.27014 5.39480 5.47443 5.68866 5.72308 5.75283 5.80292 6.06794 6.14765 6.43088 6.54816 7.23416 7.95609 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.009853 B = 0.006741 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.229577 B = 4152.967987 C = 6347.974925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.059 3.941 3 Si 0.955 3.045 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.428 4.428 8 H 0.078 0.922 9 C 0.048 3.952 10 C -0.272 4.272 11 C -0.044 4.044 12 C -0.161 4.161 13 C -0.089 4.089 14 C -0.157 4.157 15 C -0.068 4.068 16 C 0.005 3.995 17 N -0.434 5.434 18 C 0.111 3.889 19 C 0.008 3.992 20 C -0.121 4.121 21 C 0.089 3.911 22 F -0.140 7.140 23 C -0.127 4.127 24 C -0.078 4.078 25 C -0.039 4.039 26 Cl -0.058 7.058 27 H 0.302 0.698 28 H 0.117 0.883 29 H 0.125 0.875 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.182 0.818 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.560 -4.832 1.810 9.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.160 4.160 3 Si 0.779 3.221 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.096 0.904 9 C 0.043 3.957 10 C -0.297 4.297 11 C -0.046 4.046 12 C -0.180 4.180 13 C -0.107 4.107 14 C -0.177 4.177 15 C -0.086 4.086 16 C -0.117 4.117 17 N -0.140 5.140 18 C -0.046 4.046 19 C 0.007 3.993 20 C -0.142 4.142 21 C 0.070 3.930 22 F -0.119 7.119 23 C -0.145 4.145 24 C -0.096 4.096 25 C -0.067 4.067 26 Cl -0.029 7.029 27 H 0.113 0.887 28 H 0.135 0.865 29 H 0.143 0.857 30 H 0.168 0.832 31 H 0.170 0.830 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.199 0.801 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 7.977 -5.333 2.056 9.813 hybrid contribution -0.988 1.588 -0.437 1.921 sum 6.989 -3.745 1.620 8.093 Atomic orbital electron populations 1.69617 1.08789 1.32220 1.32944 1.26693 0.95279 1.03511 0.90566 0.85660 0.78818 0.77396 0.80218 1.17922 1.19609 1.19176 1.19348 0.92026 0.95788 1.38479 0.90419 1.19411 0.93550 0.91713 0.91005 1.21389 0.94830 1.07720 1.05790 1.19867 0.93593 0.95244 0.95938 1.21121 0.96516 1.00131 1.00238 1.21057 0.92905 0.98009 0.98745 1.20877 1.01192 0.96796 0.98832 1.20837 0.91542 0.98919 0.97335 1.19867 0.95167 0.96533 1.00108 1.67528 1.12164 1.21377 1.12907 1.20995 0.88942 0.97480 0.97203 1.18083 0.96733 0.91046 0.93480 1.21138 0.98370 1.00782 0.93878 1.17691 0.95220 0.93541 0.86563 1.91484 1.74062 1.90749 1.55610 1.21424 0.99981 0.93108 1.00025 1.21126 0.95887 1.00817 0.91813 1.21247 0.99379 0.92628 0.93454 1.98349 1.70186 1.88468 1.45909 0.88727 0.86498 0.85711 0.83164 0.83013 0.84934 0.85412 0.80055 0.80403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.65 13.92 21.85 0.30 -40.34 16 2 C 0.06 2.93 5.44 85.30 0.46 3.40 16 3 Si 0.95 41.08 24.67 68.60 1.69 42.78 16 4 H -0.25 -10.47 6.30 99.48 0.63 -9.84 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.43 -22.02 7.59 23.36 0.18 -21.84 16 8 H 0.08 4.25 7.22 -2.91 -0.02 4.23 16 9 C 0.05 2.41 5.20 -19.91 -0.10 2.31 16 10 C -0.27 -13.10 7.15 23.22 0.17 -12.93 16 11 C -0.04 -1.97 5.87 -20.10 -0.12 -2.09 16 12 C -0.16 -5.87 9.80 22.40 0.22 -5.65 16 13 C -0.09 -2.62 9.91 22.00 0.22 -2.40 16 14 C -0.16 -4.54 9.90 22.03 0.22 -4.32 16 15 C -0.07 -2.39 9.98 22.35 0.22 -2.16 16 16 C 0.00 0.20 6.74 41.54 0.28 0.48 16 17 N -0.43 -19.63 8.92 -169.20 -1.51 -21.14 16 18 C 0.11 5.18 5.95 43.96 0.26 5.44 16 19 C 0.01 0.34 5.05 -20.04 -0.10 0.24 16 20 C -0.12 -4.80 8.16 22.57 0.18 -4.61 16 21 C 0.09 2.93 7.29 22.34 0.16 3.09 16 22 F -0.14 -4.61 17.26 44.97 0.78 -3.84 16 23 C -0.13 -3.19 10.02 22.37 0.22 -2.97 16 24 C -0.08 -2.04 9.81 22.25 0.22 -1.82 16 25 C -0.04 -1.37 6.33 22.59 0.14 -1.22 16 26 Cl -0.06 -2.01 27.08 -2.72 -0.07 -2.08 16 27 H 0.30 13.53 8.29 -92.71 -0.77 12.76 16 28 H 0.12 5.54 4.68 -2.91 -0.01 5.52 16 29 H 0.12 4.14 8.06 -2.91 -0.02 4.11 16 30 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 32 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 33 H 0.13 5.48 7.43 -2.91 -0.02 5.46 16 34 H 0.18 3.04 8.06 -2.91 -0.02 3.01 16 35 H 0.18 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -59.46 318.56 5.10 -54.36 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 1.07 Total: 17.33 kcal Atomic # 6 Polarization: -49.90 SS G_CDS: 2.84 Total: -47.06 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -1.20 Total: -61.48 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.78 Total: -3.84 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.69 Total: 42.78 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -0.07 Total: -2.08 kcal Total: -59.46 5.10 -54.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245131844.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.987 kcal (2) G-P(sol) polarization free energy of solvation -59.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds