Wall clock time and date at job start Tue Mar 31 2020 14:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39052 * 120.56478 * 293.58123 * 3 2 1 5 5 C 1.39436 * 119.80536 * 180.25657 * 4 3 2 6 6 C 1.47892 * 119.51046 * 179.73162 * 5 4 3 7 7 C 1.39739 * 119.99596 * 309.75008 * 6 5 4 8 8 C 1.36563 * 120.14762 * 179.71959 * 7 6 5 9 9 C 1.39821 * 120.15028 * 0.54926 * 8 7 6 10 10 C 1.47605 * 120.00245 * 179.74467 * 9 8 7 11 11 O 1.21491 * 119.99572 * 179.97438 * 10 9 8 12 12 O 1.34740 * 119.99890 * 359.97438 * 10 9 8 13 13 C 1.39781 * 119.99881 * 359.72610 * 9 8 7 14 14 C 1.37794 * 119.84504 * 359.97438 * 13 9 8 15 15 Cl 1.73610 * 120.06991 * 179.97438 * 14 13 9 16 16 C 1.40038 * 120.98663 * 359.75001 * 5 4 3 17 17 C 1.35996 * 121.18562 * 359.95905 * 16 5 4 18 18 C 1.41047 * 120.11175 * 0.04272 * 17 16 5 19 19 C 1.40427 * 120.48464 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00415 * 154.64190 * 19 18 17 21 21 C 1.40362 * 119.99709 * 334.64183 * 19 18 17 22 22 N 1.30598 * 119.99946 * 334.61619 * 21 19 18 23 23 Si 1.86802 * 119.99988 * 154.62029 * 21 19 18 24 24 H 1.48501 * 109.47159 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.46765 * 299.99547 * 23 21 19 26 26 H 1.48500 * 109.47400 * 59.99889 * 23 21 19 27 27 H 1.08004 * 120.09894 * 359.96617 * 4 3 2 28 28 H 1.07992 * 119.92309 * 359.97438 * 7 6 5 29 29 H 1.07998 * 119.92428 * 180.25593 * 8 7 6 30 30 H 0.96699 * 116.99985 * 180.02562 * 12 10 9 31 31 H 1.07997 * 120.07851 * 180.02562 * 13 9 8 32 32 H 1.07998 * 119.40337 * 179.97438 * 16 5 4 33 33 H 1.08000 * 119.93951 * 180.02562 * 17 16 5 34 34 H 0.96991 * 120.00053 * 354.18183 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2754 -0.4780 1.0973 5 6 4.6696 -0.4650 1.0826 6 6 5.4153 -0.9702 2.2556 7 6 5.0952 -0.5131 3.5367 8 6 5.7779 -0.9817 4.6226 9 6 6.8080 -1.9125 4.4565 10 6 7.5475 -2.4126 5.6319 11 8 8.4422 -3.2217 5.4875 12 8 7.2303 -1.9718 6.8650 13 6 7.1372 -2.3697 3.1772 14 6 6.4441 -1.9014 2.0822 15 17 6.8485 -2.4648 0.4906 16 6 5.3744 0.0195 -0.0263 17 6 4.7235 0.4916 -1.1231 18 6 3.3135 0.5009 -1.1597 19 6 2.6333 0.9870 -2.2880 20 1 1.6341 0.6407 -2.5070 21 6 3.2522 1.9231 -3.1311 22 7 4.1882 2.7047 -2.6635 23 14 2.7371 2.0509 -4.9222 24 1 3.5359 3.1080 -5.5927 25 1 2.9705 0.7496 -5.5984 26 1 1.2951 2.3972 -4.9991 27 1 2.7464 -0.8544 1.9605 28 1 4.3034 0.2094 3.6687 29 1 5.5248 -0.6290 5.6115 30 1 7.7428 -2.3277 7.6038 31 1 7.9323 -3.0889 3.0475 32 1 6.4542 0.0181 -0.0102 33 1 5.2872 0.8602 -1.9673 34 1 4.3972 2.6980 -1.7164 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245371207.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:46 Heat of formation + Delta-G solvation = -54.949731 kcal Electronic energy + Delta-G solvation = -23164.473790 eV Core-core repulsion = 19437.466490 eV Total energy + Delta-G solvation = -3727.007300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.045 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.47026 -40.34632 -39.21198 -37.36042 -37.11006 -37.06639 -36.21377 -33.28075 -32.11150 -31.67118 -30.63417 -27.68620 -25.32667 -24.47922 -23.33985 -22.98209 -21.86138 -20.21768 -19.21825 -19.08736 -18.35279 -16.85922 -16.71286 -16.65021 -16.36399 -16.14744 -15.90021 -15.53041 -14.84576 -14.77305 -14.67285 -14.40898 -14.30761 -14.19740 -13.80662 -13.59663 -13.33172 -13.07278 -12.79376 -12.65973 -12.51868 -12.43610 -12.30821 -12.01348 -11.96776 -11.74200 -11.65734 -11.40209 -11.06822 -10.28855 -9.90116 -9.72438 -9.47623 -9.17399 -6.68391 -0.54996 0.18972 0.34905 0.79357 1.15015 1.43412 1.50027 1.63362 1.78516 1.96175 2.09740 2.21454 2.26208 2.56506 2.67545 3.41294 3.46864 3.76979 3.83244 3.98429 4.13316 4.16862 4.27272 4.39844 4.62022 4.80251 4.87279 4.89535 5.07976 5.14309 5.21841 5.26998 5.49604 5.53267 5.56630 5.62158 5.73262 5.82795 5.97628 6.12654 6.47427 6.60004 6.88572 6.97067 7.78156 Molecular weight = 327.04amu Principal moments of inertia in cm(-1) A = 0.019522 B = 0.003156 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.948219 B = 8869.471837 C = 9635.034038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C 0.303 3.697 3 C -0.208 4.208 4 C 0.022 3.978 5 C -0.214 4.214 6 C 0.043 3.957 7 C -0.126 4.126 8 C -0.036 4.036 9 C -0.150 4.150 10 C 0.541 3.459 11 O -0.549 6.549 12 O -0.499 6.499 13 C -0.043 4.043 14 C -0.066 4.066 15 Cl -0.063 7.063 16 C -0.014 4.014 17 C -0.228 4.228 18 C 0.119 3.881 19 C -0.495 4.495 20 H 0.072 0.928 21 C 0.012 3.988 22 N -0.768 5.768 23 Si 1.107 2.893 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.265 1.265 27 H 0.129 0.871 28 H 0.155 0.845 29 H 0.170 0.830 30 H 0.435 0.565 31 H 0.145 0.855 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.152 -4.391 11.717 14.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.204 5.204 2 C -0.006 4.006 3 C -0.214 4.214 4 C 0.001 3.999 5 C -0.216 4.216 6 C 0.042 3.958 7 C -0.144 4.144 8 C -0.054 4.054 9 C -0.151 4.151 10 C 0.387 3.613 11 O -0.442 6.442 12 O -0.313 6.313 13 C -0.062 4.062 14 C -0.093 4.093 15 Cl -0.034 7.034 16 C -0.033 4.033 17 C -0.247 4.247 18 C 0.113 3.887 19 C -0.521 4.521 20 H 0.090 0.910 21 C -0.211 4.211 22 N -0.388 5.388 23 Si 0.924 3.076 24 H -0.186 1.186 25 H -0.183 1.183 26 H -0.190 1.190 27 H 0.147 0.853 28 H 0.173 0.827 29 H 0.187 0.813 30 H 0.297 0.703 31 H 0.162 0.838 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.835 -3.674 9.866 12.552 hybrid contribution 0.478 -1.119 1.514 1.942 sum 7.313 -4.793 11.379 14.351 Atomic orbital electron populations 1.81030 1.13142 1.15166 1.11027 1.25905 0.92848 0.90762 0.91060 1.16820 0.82959 1.23101 0.98478 1.20777 0.92587 0.91739 0.94762 1.17767 0.91764 1.15990 0.96034 1.19059 0.91449 0.91244 0.94063 1.21262 1.01818 1.01294 0.90012 1.21402 0.91201 0.91975 1.00774 1.18950 1.01552 1.04292 0.90337 1.20616 0.79800 0.77201 0.83683 1.90889 1.31989 1.34132 1.87166 1.84507 1.62844 1.67262 1.16724 1.21015 0.97832 0.97668 0.89660 1.20939 1.00533 1.01031 0.86796 1.98374 1.92920 1.88177 1.23894 1.20585 0.98706 0.92517 0.91483 1.20676 0.92986 1.11258 0.99796 1.18732 0.92172 0.88240 0.89521 1.20995 1.03266 1.20861 1.06975 0.91013 1.28469 0.91532 0.90648 1.10441 1.70472 1.21280 1.27349 1.19682 0.83098 0.77480 0.78869 0.68178 1.18564 1.18298 1.18981 0.85302 0.82740 0.81298 0.70285 0.83771 0.86856 0.87747 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -24.37 18.54 19.00 0.35 -24.01 16 2 C 0.30 13.60 14.30 88.33 1.26 14.86 16 3 C -0.21 -8.86 5.93 -19.64 -0.12 -8.98 16 4 C 0.02 0.79 9.17 22.75 0.21 1.00 16 5 C -0.21 -7.28 5.12 -20.00 -0.10 -7.38 16 6 C 0.04 1.21 5.45 -19.97 -0.11 1.10 16 7 C -0.13 -2.81 9.41 22.24 0.21 -2.60 16 8 C -0.04 -0.67 9.55 22.26 0.21 -0.46 16 9 C -0.15 -3.27 5.88 -20.05 -0.12 -3.39 16 10 C 0.54 11.06 8.27 70.29 0.58 11.64 16 11 O -0.55 -14.55 17.12 19.86 0.34 -14.21 16 12 O -0.50 -6.30 12.66 -56.50 -0.72 -7.02 16 13 C -0.04 -1.06 9.37 22.54 0.21 -0.85 16 14 C -0.07 -1.84 6.26 22.55 0.14 -1.70 16 15 Cl -0.06 -1.84 25.91 -2.72 -0.07 -1.91 16 16 C -0.01 -0.51 8.00 22.19 0.18 -0.34 16 17 C -0.23 -9.69 7.88 22.44 0.18 -9.51 16 18 C 0.12 5.45 5.46 -19.86 -0.11 5.34 16 19 C -0.50 -23.57 8.49 23.32 0.20 -23.37 16 20 H 0.07 3.54 7.45 -2.91 -0.02 3.52 16 21 C 0.01 0.54 4.95 85.39 0.42 0.97 16 22 N -0.77 -35.27 12.30 21.90 0.27 -35.00 16 23 Si 1.11 38.24 30.01 68.60 2.06 40.30 16 24 H -0.26 -8.72 7.11 99.48 0.71 -8.02 16 25 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 26 H -0.27 -8.86 7.11 99.48 0.71 -8.15 16 27 H 0.13 3.93 8.02 -2.91 -0.02 3.91 16 28 H 0.15 3.00 8.02 -2.91 -0.02 2.98 16 29 H 0.17 2.18 7.59 -2.91 -0.02 2.16 16 30 H 0.43 1.50 9.11 -74.06 -0.67 0.82 16 31 H 0.14 3.50 7.64 -2.91 -0.02 3.47 16 32 H 0.11 3.86 7.07 -2.91 -0.02 3.84 16 33 H 0.10 4.62 6.48 -2.91 -0.02 4.60 16 34 H 0.30 13.97 6.68 -92.72 -0.62 13.35 16 Total: -1.00 -56.97 329.41 6.16 -50.82 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.67 Total: 14.72 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 3.25 Total: -23.68 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.62 Total: -59.02 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.38 Total: -21.23 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.06 Total: 40.30 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.07 Total: -1.91 kcal Total: -56.97 6.16 -50.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245371207.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.135 kcal (2) G-P(sol) polarization free energy of solvation -56.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds