Wall clock time and date at job start Tue Mar 31 2020 15:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35912 * 116.99974 * 2 1 4 4 C 1.38756 * 120.04601 * 270.32338 * 3 2 1 5 5 C 1.50694 * 120.02175 * 359.97157 * 4 3 2 6 6 C 1.38118 * 119.95232 * 180.31886 * 4 3 2 7 7 C 1.38372 * 120.04819 * 359.65403 * 6 4 3 8 8 Br 1.89091 * 119.95411 * 180.02562 * 7 6 4 9 9 C 1.38320 * 120.08729 * 0.02562 * 7 6 4 10 10 C 1.38161 * 120.04980 * 0.04570 * 9 7 6 11 11 C 1.50701 * 120.02563 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46921 * 259.99738 * 11 10 9 13 13 C 1.46893 * 111.00243 * 293.95400 * 12 11 10 14 14 C 1.46906 * 110.99853 * 169.99766 * 12 11 10 15 15 C 1.50693 * 109.47155 * 190.00173 * 14 12 11 16 16 H 1.08002 * 120.00119 * 0.02562 * 15 14 12 17 17 C 1.37881 * 120.00394 * 180.02562 * 15 14 12 18 18 N 1.31508 * 120.00401 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99435 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.46954 * 90.00203 * 19 17 15 21 21 H 1.48501 * 109.46843 * 210.00277 * 19 17 15 22 22 H 1.48504 * 109.47114 * 330.00314 * 19 17 15 23 23 H 1.09012 * 109.47126 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47188 * 299.99712 * 1 2 3 25 25 H 1.08997 * 109.47273 * 59.99963 * 1 2 3 26 26 H 1.09005 * 109.47344 * 270.34212 * 5 4 3 27 27 H 1.08997 * 109.47273 * 30.34697 * 5 4 3 28 28 H 1.09001 * 109.47103 * 150.34478 * 5 4 3 29 29 H 1.07992 * 119.97708 * 179.68232 * 6 4 3 30 30 H 1.08002 * 119.97396 * 180.02562 * 9 7 6 31 31 H 1.09002 * 109.47060 * 19.99919 * 11 10 9 32 32 H 1.09001 * 109.47380 * 140.00007 * 11 10 9 33 33 H 1.08999 * 109.47439 * 60.00146 * 13 12 11 34 34 H 1.08997 * 109.47257 * 180.02562 * 13 12 11 35 35 H 1.09006 * 109.46808 * 299.99830 * 13 12 11 36 36 H 1.09000 * 109.47257 * 310.00208 * 14 12 11 37 37 H 1.09006 * 109.46871 * 70.00245 * 14 12 11 38 38 H 0.97005 * 119.99916 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 2.3554 1.8331 -1.2011 5 6 2.0080 1.1662 -2.5070 6 6 2.9883 3.0607 -1.1989 7 6 3.3075 3.6735 0.0000 8 35 4.1734 5.3545 -0.0001 9 6 2.9940 3.0580 1.1984 10 6 2.3622 1.8294 1.2006 11 6 2.0214 1.1591 2.5066 12 7 3.0280 0.1323 2.8073 13 6 2.9730 -0.9615 1.8283 14 6 2.8676 -0.3774 4.1757 15 6 4.0517 -1.2383 4.5331 16 1 4.8444 -1.3912 3.8156 17 6 4.1232 -1.8308 5.7760 18 7 5.1568 -2.5817 6.0881 19 14 2.7525 -1.5658 7.0173 20 1 1.7210 -2.6206 6.8483 21 1 3.3098 -1.6340 8.3921 22 1 2.1373 -0.2321 6.7980 23 1 -0.3634 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 2.8377 0.5344 -2.8244 27 1 1.1151 0.5549 -2.3766 28 1 1.8200 1.9269 -3.2647 29 1 3.2339 3.5428 -2.1335 30 1 3.2436 3.5382 2.1331 31 1 2.0105 1.9019 3.3043 32 1 1.0388 0.6933 2.4305 33 1 3.1642 -0.5662 0.8307 34 1 3.7281 -1.7079 2.0746 35 1 1.9854 -1.4223 1.8535 36 1 2.8046 0.4602 4.8704 37 1 1.9552 -0.9705 4.2379 38 1 5.2072 -2.9983 6.9627 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250210762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:01 Heat of formation + Delta-G solvation = -0.733094 kcal Electronic energy + Delta-G solvation = -20349.157526 eV Core-core repulsion = 17238.597725 eV Total energy + Delta-G solvation = -3110.559801 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.51336 -37.41155 -36.59827 -33.24574 -32.53226 -31.78955 -29.37827 -28.14829 -27.76460 -26.58533 -25.99425 -23.82229 -21.53594 -21.01571 -19.92772 -17.73517 -16.95384 -16.65455 -15.94902 -15.33870 -14.63526 -14.25610 -14.18121 -14.03677 -13.93542 -13.61773 -13.25704 -12.65359 -12.59413 -12.45577 -12.24909 -12.16010 -11.79659 -11.49926 -11.38865 -11.00373 -10.88214 -10.73018 -10.49711 -10.36299 -10.09875 -9.94496 -9.77031 -9.26783 -8.78089 -8.55978 -8.46337 -7.33771 -6.03068 -4.00084 0.91007 1.20011 1.56067 3.24641 3.28464 3.36281 3.37628 3.80598 4.43046 4.61227 4.64049 5.01772 5.04212 5.12329 5.16996 5.21650 5.26233 5.30455 5.45406 5.46982 5.53953 5.61435 5.66798 5.92612 6.01552 6.12061 6.17976 6.35450 6.40830 6.46235 6.56679 6.83398 6.92470 7.05689 7.44473 7.60986 7.92497 8.07157 8.68145 9.06562 9.58405 11.10165 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.014224 B = 0.003944 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.971235 B = 7097.963744 C = 8444.131811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.117 3.883 4 C -0.103 4.103 5 C -0.107 4.107 6 C -0.087 4.087 7 C -0.091 4.091 8 Br -0.056 7.056 9 C -0.067 4.067 10 C -0.071 4.071 11 C 0.092 3.908 12 N -0.524 5.524 13 C 0.043 3.957 14 C 0.163 3.837 15 C -0.507 4.507 16 H 0.081 0.919 17 C 0.068 3.932 18 N -0.900 5.900 19 Si 0.875 3.125 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.268 1.268 23 H 0.094 0.906 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.132 0.868 30 H 0.138 0.862 31 H 0.077 0.923 32 H 0.035 0.965 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.014 0.986 36 H 0.027 0.973 37 H -0.017 1.017 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.089 14.334 -17.304 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.238 6.238 3 C 0.072 3.928 4 C -0.104 4.104 5 C -0.163 4.163 6 C -0.108 4.108 7 C -0.170 4.170 8 Br 0.029 6.971 9 C -0.088 4.088 10 C -0.073 4.073 11 C -0.036 4.036 12 N -0.247 5.247 13 C -0.105 4.105 14 C 0.037 3.963 15 C -0.545 4.545 16 H 0.099 0.901 17 C -0.133 4.133 18 N -0.540 5.540 19 Si 0.702 3.298 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.192 1.192 23 H 0.112 0.888 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.150 0.850 30 H 0.155 0.845 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.032 0.968 36 H 0.045 0.955 37 H 0.001 0.999 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.144 14.885 -17.164 24.135 hybrid contribution -1.728 -0.529 0.906 2.022 sum -9.872 14.356 -16.257 23.830 Atomic orbital electron populations 1.22989 0.79673 1.03306 1.00399 1.86302 1.19213 1.24093 1.94200 1.18405 0.97042 0.86010 0.91305 1.20107 1.00493 0.94419 0.95385 1.20677 1.02412 1.00265 0.92979 1.20769 0.98618 0.94607 0.96761 1.21691 1.05066 0.94163 0.96120 1.96683 1.78133 1.22920 1.99320 1.20913 0.96449 0.94381 0.97012 1.20259 0.98161 0.93536 0.95323 1.20990 0.94209 0.95874 0.92502 1.62017 1.45586 1.12579 1.04562 1.22357 0.99654 0.93738 0.94716 1.20206 0.96377 0.94838 0.84902 1.21026 1.05345 1.27678 1.00449 0.90082 1.24890 0.95597 0.94905 0.97912 1.69892 1.29511 1.32745 1.21811 0.86872 0.82711 0.79026 0.81170 1.20387 1.21144 1.19241 0.88750 0.93542 0.93713 0.90638 0.91286 0.91599 0.84965 0.84465 0.90429 0.94667 0.92107 0.90929 0.96776 0.95499 0.99892 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.47 101.05 1.06 1.38 16 2 O -0.32 -4.45 5.75 -19.46 -0.11 -4.56 16 3 C 0.12 1.65 4.42 -39.22 -0.17 1.47 16 4 C -0.10 -1.24 5.89 -104.48 -0.62 -1.86 16 5 C -0.11 -0.99 9.79 36.00 0.35 -0.64 16 6 C -0.09 -1.02 9.44 -39.58 -0.37 -1.40 16 7 C -0.09 -1.17 6.22 -39.50 -0.25 -1.41 16 8 Br -0.06 -0.64 33.70 -68.01 -2.29 -2.93 16 9 C -0.07 -0.96 9.40 -39.58 -0.37 -1.33 16 10 C -0.07 -1.09 5.17 -104.48 -0.54 -1.63 16 11 C 0.09 1.60 4.99 -4.97 -0.02 1.57 16 12 N -0.52 -11.26 4.74 -245.82 -1.17 -12.43 16 13 C 0.04 0.88 7.85 60.06 0.47 1.36 16 14 C 0.16 3.99 3.79 -4.98 -0.02 3.97 16 15 C -0.51 -14.58 9.01 -34.44 -0.31 -14.89 16 16 H 0.08 2.56 7.37 -52.49 -0.39 2.17 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 19 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 22 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 23 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 24 H 0.05 0.49 7.12 -51.93 -0.37 0.12 16 25 H 0.04 0.38 7.22 -51.93 -0.38 0.01 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.62 6.30 -51.93 -0.33 0.29 16 28 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 30 H 0.14 1.87 8.04 -52.49 -0.42 1.45 16 31 H 0.08 1.28 7.79 -51.93 -0.40 0.88 16 32 H 0.04 0.58 6.55 -51.93 -0.34 0.24 16 33 H 0.06 1.16 4.97 -51.93 -0.26 0.90 16 34 H 0.07 1.66 6.76 -51.93 -0.35 1.31 16 35 H 0.01 0.27 7.71 -51.93 -0.40 -0.13 16 36 H 0.03 0.66 6.99 -51.93 -0.36 0.30 16 37 H -0.02 -0.41 7.55 -51.93 -0.39 -0.80 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 323.40 15.07 4.87 4.87 Total: -1.00 -31.22 323.40 -8.73 -39.94 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -5.24 Total: -3.25 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -0.89 Total: -11.51 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: -0.39 Total: -39.46 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.11 Total: -4.56 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -2.29 Total: -2.93 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.22 -8.73 -39.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250210762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.211 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds