Wall clock time and date at job start Tue Mar 31 2020 15:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35912 * 116.99974 * 2 1 4 4 C 1.38756 * 120.04601 * 270.32338 * 3 2 1 5 5 C 1.50694 * 120.02175 * 359.97157 * 4 3 2 6 6 C 1.38118 * 119.95232 * 180.31886 * 4 3 2 7 7 C 1.38372 * 120.04819 * 359.65403 * 6 4 3 8 8 Br 1.89091 * 119.95411 * 180.02562 * 7 6 4 9 9 C 1.38320 * 120.08729 * 0.02562 * 7 6 4 10 10 C 1.38161 * 120.04980 * 0.04570 * 9 7 6 11 11 C 1.50701 * 120.02563 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46921 * 259.99738 * 11 10 9 13 13 C 1.46893 * 111.00243 * 293.95400 * 12 11 10 14 14 C 1.46906 * 110.99853 * 169.99766 * 12 11 10 15 15 C 1.50693 * 109.47155 * 190.00173 * 14 12 11 16 16 H 1.08002 * 120.00119 * 0.02562 * 15 14 12 17 17 C 1.37881 * 120.00394 * 180.02562 * 15 14 12 18 18 N 1.31508 * 120.00401 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99435 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.46954 * 90.00203 * 19 17 15 21 21 H 1.48501 * 109.46843 * 210.00277 * 19 17 15 22 22 H 1.48504 * 109.47114 * 330.00314 * 19 17 15 23 23 H 1.09012 * 109.47126 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47188 * 299.99712 * 1 2 3 25 25 H 1.08997 * 109.47273 * 59.99963 * 1 2 3 26 26 H 1.09005 * 109.47344 * 270.34212 * 5 4 3 27 27 H 1.08997 * 109.47273 * 30.34697 * 5 4 3 28 28 H 1.09001 * 109.47103 * 150.34478 * 5 4 3 29 29 H 1.07992 * 119.97708 * 179.68232 * 6 4 3 30 30 H 1.08002 * 119.97396 * 180.02562 * 9 7 6 31 31 H 1.09002 * 109.47060 * 19.99919 * 11 10 9 32 32 H 1.09001 * 109.47380 * 140.00007 * 11 10 9 33 33 H 1.08999 * 109.47439 * 60.00146 * 13 12 11 34 34 H 1.08997 * 109.47257 * 180.02562 * 13 12 11 35 35 H 1.09006 * 109.46808 * 299.99830 * 13 12 11 36 36 H 1.09000 * 109.47257 * 310.00208 * 14 12 11 37 37 H 1.09006 * 109.46871 * 70.00245 * 14 12 11 38 38 H 0.97005 * 119.99916 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 2.3554 1.8331 -1.2011 5 6 2.0080 1.1662 -2.5070 6 6 2.9883 3.0607 -1.1989 7 6 3.3075 3.6735 0.0000 8 35 4.1734 5.3545 -0.0001 9 6 2.9940 3.0580 1.1984 10 6 2.3622 1.8294 1.2006 11 6 2.0214 1.1591 2.5066 12 7 3.0280 0.1323 2.8073 13 6 2.9730 -0.9615 1.8283 14 6 2.8676 -0.3774 4.1757 15 6 4.0517 -1.2383 4.5331 16 1 4.8444 -1.3912 3.8156 17 6 4.1232 -1.8308 5.7760 18 7 5.1568 -2.5817 6.0881 19 14 2.7525 -1.5658 7.0173 20 1 1.7210 -2.6206 6.8483 21 1 3.3098 -1.6340 8.3921 22 1 2.1373 -0.2321 6.7980 23 1 -0.3634 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 2.8377 0.5344 -2.8244 27 1 1.1151 0.5549 -2.3766 28 1 1.8200 1.9269 -3.2647 29 1 3.2339 3.5428 -2.1335 30 1 3.2436 3.5382 2.1331 31 1 2.0105 1.9019 3.3043 32 1 1.0388 0.6933 2.4305 33 1 3.1642 -0.5662 0.8307 34 1 3.7281 -1.7079 2.0746 35 1 1.9854 -1.4223 1.8535 36 1 2.8046 0.4602 4.8704 37 1 1.9552 -0.9705 4.2379 38 1 5.2072 -2.9983 6.9627 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250210762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:01 Heat of formation + Delta-G solvation = -20.224503 kcal Electronic energy + Delta-G solvation = -20350.002737 eV Core-core repulsion = 17238.597725 eV Total energy + Delta-G solvation = -3111.405012 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54662 -38.38536 -38.19588 -34.85621 -33.93491 -33.05371 -30.51383 -29.61665 -29.08091 -27.76142 -27.02165 -25.49834 -22.72470 -22.38029 -21.38826 -19.03921 -18.66073 -17.77284 -17.11772 -16.71489 -16.12310 -15.80095 -15.71650 -15.27636 -14.98195 -14.55656 -14.51606 -14.32556 -13.85543 -13.54821 -13.43007 -13.27179 -13.05597 -12.88107 -12.68732 -12.56041 -12.51358 -12.13259 -11.91106 -11.75787 -11.49427 -11.43725 -11.25377 -10.85648 -10.78995 -9.81267 -9.45817 -9.00339 -8.27650 -6.31346 -0.08818 0.18781 0.59929 1.34405 1.36736 1.47553 2.25363 2.34814 2.82539 3.05284 3.40789 3.63732 3.69744 4.08824 4.15660 4.26010 4.32308 4.38484 4.50950 4.54850 4.56113 4.66671 4.73555 4.73815 4.79768 4.86402 4.94767 5.05121 5.10598 5.16316 5.27672 5.29895 5.42126 5.52745 5.58396 5.98042 6.33497 6.48465 6.64389 6.74617 7.31967 8.89261 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.014224 B = 0.003944 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.971235 B = 7097.963744 C = 8444.131811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.340 6.340 3 C 0.110 3.890 4 C -0.103 4.103 5 C -0.105 4.105 6 C -0.080 4.080 7 C -0.099 4.099 8 Br -0.044 7.044 9 C -0.077 4.077 10 C -0.094 4.094 11 C 0.097 3.903 12 N -0.542 5.542 13 C 0.059 3.941 14 C 0.173 3.827 15 C -0.517 4.517 16 H 0.034 0.966 17 C 0.008 3.992 18 N -0.949 5.949 19 Si 0.949 3.051 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.247 1.247 23 H 0.107 0.893 24 H 0.042 0.958 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.158 0.842 30 H 0.135 0.865 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.022 0.978 36 H 0.032 0.968 37 H -0.012 1.012 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.163 15.734 -18.437 26.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.258 6.258 3 C 0.065 3.935 4 C -0.104 4.104 5 C -0.162 4.162 6 C -0.100 4.100 7 C -0.179 4.179 8 Br 0.042 6.958 9 C -0.098 4.098 10 C -0.096 4.096 11 C -0.031 4.031 12 N -0.266 5.266 13 C -0.089 4.089 14 C 0.046 3.954 15 C -0.555 4.555 16 H 0.052 0.948 17 C -0.189 4.189 18 N -0.590 5.590 19 Si 0.772 3.228 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.171 1.171 23 H 0.125 0.875 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.108 0.892 29 H 0.176 0.824 30 H 0.153 0.847 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.040 0.960 36 H 0.050 0.950 37 H 0.005 0.995 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.231 16.303 -18.324 26.574 hybrid contribution -1.019 -0.933 1.123 1.781 sum -11.250 15.369 -17.200 25.664 Atomic orbital electron populations 1.23184 0.77872 1.04465 1.01254 1.86221 1.21013 1.24197 1.94329 1.18568 0.97204 0.86080 0.91612 1.20413 0.99714 0.94428 0.95894 1.20745 1.02559 1.00867 0.91982 1.21111 0.97218 0.94306 0.97346 1.21820 1.05140 0.94800 0.96094 1.96691 1.77878 1.21938 1.99308 1.20951 0.96777 0.94359 0.97691 1.20137 1.00266 0.94366 0.94810 1.20961 0.93388 0.94657 0.94050 1.61881 1.48117 1.13369 1.03246 1.22166 0.98728 0.92860 0.95146 1.19954 0.94312 0.94142 0.86943 1.21239 1.05737 1.28642 0.99862 0.94764 1.25857 0.98467 0.94344 1.00247 1.70055 1.32058 1.34138 1.22716 0.85695 0.79152 0.80100 0.77863 1.19200 1.20635 1.17091 0.87493 0.93914 0.91623 0.90543 0.90859 0.89191 0.82408 0.84691 0.90000 0.93778 0.90644 0.94598 0.95984 0.95020 0.99453 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.47 113.37 1.19 1.67 16 2 O -0.34 -8.89 5.75 -92.56 -0.53 -9.42 16 3 C 0.11 2.93 4.42 22.51 0.10 3.03 16 4 C -0.10 -2.25 5.89 -19.77 -0.12 -2.37 16 5 C -0.11 -1.63 9.79 71.23 0.70 -0.93 16 6 C -0.08 -1.66 9.44 22.27 0.21 -1.45 16 7 C -0.10 -2.38 6.22 22.32 0.14 -2.24 16 8 Br -0.04 -0.92 33.70 -20.37 -0.69 -1.61 16 9 C -0.08 -2.14 9.40 22.27 0.21 -1.93 16 10 C -0.09 -2.80 5.17 -19.77 -0.10 -2.90 16 11 C 0.10 3.28 4.99 85.56 0.43 3.71 16 12 N -0.54 -23.47 4.74 -931.65 -4.42 -27.89 16 13 C 0.06 2.45 7.85 127.69 1.00 3.45 16 14 C 0.17 8.50 3.79 85.55 0.32 8.82 16 15 C -0.52 -30.68 9.01 25.60 0.23 -30.45 16 16 H 0.03 2.29 7.37 -2.91 -0.02 2.27 16 17 C 0.01 0.47 5.47 84.66 0.46 0.93 16 18 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 19 Si 0.95 44.29 27.47 68.60 1.88 46.18 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 23 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.04 0.82 7.12 -2.39 -0.02 0.81 16 25 H 0.07 0.94 7.22 -2.39 -0.02 0.92 16 26 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.07 1.08 6.30 -2.39 -0.02 1.07 16 28 H 0.09 0.96 8.09 -2.39 -0.02 0.95 16 29 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 30 H 0.14 3.65 8.04 -2.91 -0.02 3.63 16 31 H 0.08 2.64 7.79 -2.39 -0.02 2.62 16 32 H 0.04 1.41 6.55 -2.39 -0.02 1.39 16 33 H 0.08 2.89 4.97 -2.39 -0.01 2.88 16 34 H 0.04 1.71 6.76 -2.39 -0.02 1.70 16 35 H 0.02 0.86 7.71 -2.38 -0.02 0.84 16 36 H 0.03 1.52 6.99 -2.39 -0.02 1.51 16 37 H -0.01 -0.58 7.55 -2.38 -0.02 -0.60 16 38 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 Total: -1.00 -68.86 323.40 2.32 -66.54 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.00 Total: 6.87 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: 4.77 Total: -20.66 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -4.12 Total: -87.89 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.53 Total: -9.42 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.18 kcal Atomic # 35 Polarization: -0.92 SS G_CDS: -0.69 Total: -1.61 kcal Total: -68.86 2.32 -66.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250210762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.315 kcal (2) G-P(sol) polarization free energy of solvation -68.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds