Wall clock time and date at job start Tue Mar 31 2020 15:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00155 * 2 1 4 4 H 1.48499 * 109.47199 * 269.99589 * 3 2 1 5 5 H 1.48497 * 109.47283 * 29.99624 * 3 2 1 6 6 H 1.48499 * 109.47112 * 149.99748 * 3 2 1 7 7 C 1.37878 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.53950 * 113.74161 * 81.25908 * 9 7 2 11 11 N 1.47925 * 85.99684 * 138.00415 * 10 9 7 12 12 S 1.65601 * 134.49825 * 155.35639 * 11 10 9 13 13 O 1.42097 * 106.40419 * 23.54043 * 12 11 10 14 14 O 1.42099 * 106.40102 * 156.46064 * 12 11 10 15 15 C 1.76197 * 107.22066 * 269.99784 * 12 11 10 16 16 C 1.38566 * 119.84650 * 89.99948 * 15 12 11 17 17 C 1.38051 * 120.40416 * 180.02562 * 16 15 12 18 18 C 1.38705 * 120.09062 * 359.95475 * 17 16 15 19 19 O 1.35641 * 120.15603 * 180.02562 * 18 17 16 20 20 C 1.40198 * 119.69164 * 0.02776 * 18 17 16 21 21 C 1.47398 * 120.20040 * 180.02562 * 20 18 17 22 22 O 1.21518 * 119.99711 * 359.97438 * 21 20 18 23 23 O 1.34748 * 120.00257 * 179.97438 * 21 20 18 24 24 C 1.37767 * 119.84771 * 269.73627 * 15 12 11 25 25 C 1.47579 * 91.00789 * 335.35638 * 11 10 9 26 26 H 0.96999 * 119.99516 * 0.02562 * 1 2 3 27 27 H 1.09002 * 112.94317 * 309.66485 * 9 7 2 28 28 H 1.09006 * 113.76402 * 252.36573 * 10 9 7 29 29 H 1.08997 * 113.76968 * 23.75198 * 10 9 7 30 30 H 1.08004 * 119.79785 * 359.97438 * 16 15 12 31 31 H 1.08001 * 119.95179 * 179.97438 * 17 16 15 32 32 H 0.96695 * 113.99653 * 90.00105 * 19 18 17 33 33 H 0.96706 * 116.99926 * 180.02562 * 23 21 20 34 34 H 1.07998 * 120.04381 * 359.96919 * 24 15 12 35 35 H 1.09003 * 113.77049 * 270.34039 * 25 11 10 36 36 H 1.08993 * 113.77081 * 138.93800 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.7561 -2.9292 -1.3924 11 7 1.1904 -4.2911 -1.0121 12 16 0.7606 -5.8199 -1.4816 13 8 0.2036 -5.6983 -2.7832 14 8 1.8700 -6.6572 -1.1861 15 6 -0.5506 -6.3404 -0.4260 16 6 -1.8651 -6.0830 -0.7808 17 6 -2.9013 -6.4852 0.0379 18 6 -2.6319 -7.1523 1.2238 19 8 -3.6491 -7.5486 2.0290 20 6 -1.3034 -7.4151 1.5864 21 6 -1.0043 -8.1237 2.8438 22 8 -1.9106 -8.4816 3.5699 23 8 0.2740 -8.3747 3.1882 24 6 -0.2644 -7.0063 0.7456 25 6 2.1608 -3.7402 -0.0462 26 1 -0.4849 0.8401 -0.0004 27 1 0.4833 -2.5466 0.7730 28 1 -0.3213 -2.8307 -1.5255 29 1 1.3285 -2.4988 -2.2141 30 1 -2.0803 -5.5638 -1.7031 31 1 -3.9232 -6.2805 -0.2455 32 1 -3.9804 -8.4363 1.8360 33 1 0.4204 -8.8425 4.0218 34 1 0.7615 -7.2089 1.0157 35 1 3.1449 -3.5476 -0.4734 36 1 2.2040 -4.2889 0.8945 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260392884.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:49 Heat of formation + Delta-G solvation = -139.699206 kcal Electronic energy + Delta-G solvation = -25552.362020 eV Core-core repulsion = 21516.414493 eV Total energy + Delta-G solvation = -4035.947526 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.87030 -39.27351 -38.07013 -37.17578 -36.94027 -36.13634 -35.57606 -32.62826 -31.85080 -30.47952 -28.30564 -25.24914 -25.01306 -24.51846 -23.36617 -21.95463 -19.84235 -18.82454 -18.79051 -18.21447 -17.74602 -16.92066 -16.49721 -16.34524 -16.18801 -16.00089 -15.44021 -15.15948 -14.61782 -14.45112 -14.07889 -13.60857 -13.28112 -13.14240 -12.93461 -12.65624 -12.63030 -11.88645 -11.78490 -11.76371 -11.72940 -11.58018 -11.46034 -11.36160 -11.02851 -10.92523 -10.59626 -10.53682 -10.38318 -9.51483 -9.44330 -9.31143 -9.07301 -8.63104 -8.27497 -6.17783 -4.22474 0.16575 0.54696 0.74614 2.18593 2.72109 3.03831 3.24557 3.32396 3.34549 3.42082 3.67670 4.01456 4.22411 4.33758 4.54788 4.66803 4.92422 5.02750 5.12442 5.17205 5.49674 5.50507 5.65079 5.72471 5.84030 6.13464 6.19647 6.20548 6.27525 6.33660 6.44334 6.65475 6.80345 7.22132 7.45074 7.60257 7.66152 7.80080 8.18557 8.80309 9.43777 10.91776 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.003794 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.778603 B = 7379.194945 C = 7915.740598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.064 0.936 9 C 0.035 3.965 10 C 0.137 3.863 11 N -1.040 6.040 12 S 2.702 3.298 13 O -0.962 6.962 14 O -0.964 6.964 15 C -0.695 4.695 16 C 0.035 3.965 17 C -0.178 4.178 18 C 0.224 3.776 19 O -0.477 6.477 20 C -0.185 4.185 21 C 0.531 3.469 22 O -0.502 6.502 23 O -0.510 6.510 24 C 0.056 3.944 25 C 0.126 3.874 26 H 0.264 0.736 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.153 0.847 31 H 0.150 0.850 32 H 0.402 0.598 33 H 0.416 0.584 34 H 0.158 0.842 35 H 0.078 0.922 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.145 -14.835 1.689 15.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.558 4.558 8 H 0.082 0.918 9 C 0.014 3.986 10 C 0.012 3.988 11 N -0.883 5.883 12 S 2.794 3.206 13 O -0.952 6.952 14 O -0.955 6.955 15 C -0.779 4.779 16 C 0.016 3.984 17 C -0.197 4.197 18 C 0.177 3.823 19 O -0.289 6.289 20 C -0.187 4.187 21 C 0.375 3.625 22 O -0.391 6.391 23 O -0.322 6.322 24 C 0.037 3.963 25 C 0.002 3.998 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.171 0.829 31 H 0.167 0.833 32 H 0.262 0.738 33 H 0.275 0.725 34 H 0.176 0.824 35 H 0.096 0.904 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.285 -14.823 1.046 15.466 hybrid contribution -0.253 0.147 0.914 0.960 sum -4.538 -14.677 1.960 15.487 Atomic orbital electron populations 1.69942 1.06050 1.27106 1.49289 1.25019 0.94854 0.99341 0.94370 0.86556 0.79896 0.83101 0.78236 1.20537 1.21243 1.19732 1.21041 0.93148 0.89798 1.51789 0.91789 1.20626 0.94061 0.91229 0.92674 1.23321 0.99043 0.74512 1.01884 1.60169 1.51974 1.19503 1.56685 1.01534 0.73335 0.72417 0.73341 1.93544 1.80128 1.86335 1.35230 1.93540 1.49777 1.66688 1.85475 1.31427 1.15988 1.15804 1.14655 1.21124 0.90243 0.89360 0.97646 1.21532 1.01135 1.03138 0.93875 1.18676 0.85676 0.90640 0.87270 1.84722 1.49283 1.37902 1.57009 1.19527 0.94246 1.08881 0.96070 1.20476 0.80415 0.76340 0.85294 1.90919 1.46693 1.49450 1.52024 1.84587 1.29093 1.72872 1.45657 1.21169 0.99913 0.86459 0.88802 1.23066 0.93124 0.94398 0.89232 0.92663 0.91837 0.91867 0.90497 0.82945 0.83253 0.73795 0.72515 0.82406 0.90404 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.58 13.29 55.43 0.74 -22.84 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 19.75 29.54 -169.99 -5.02 14.73 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 7 C -0.52 -12.73 8.77 -34.44 -0.30 -13.04 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.04 0.78 3.60 -90.84 -0.33 0.45 16 10 C 0.14 2.79 8.55 -2.77 -0.02 2.77 16 11 N -1.04 -18.97 4.12 -118.52 -0.49 -19.46 16 12 S 2.70 45.25 6.23 -107.50 -0.67 44.58 16 13 O -0.96 -17.78 17.24 -57.17 -0.99 -18.77 16 14 O -0.96 -17.58 17.23 -57.17 -0.98 -18.56 16 15 C -0.69 -10.02 5.97 -39.63 -0.24 -10.26 16 16 C 0.04 0.45 9.50 -39.53 -0.38 0.08 16 17 C -0.18 -2.01 9.98 -39.48 -0.39 -2.40 16 18 C 0.22 2.74 6.72 -38.67 -0.26 2.48 16 19 O -0.48 -5.33 11.58 -40.50 -0.47 -5.80 16 20 C -0.18 -2.44 5.89 -104.86 -0.62 -3.05 16 21 C 0.53 6.71 8.26 34.46 0.28 6.99 16 22 O -0.50 -7.19 15.95 -26.60 -0.42 -7.62 16 23 O -0.51 -5.04 12.68 -40.62 -0.52 -5.55 16 24 C 0.06 0.77 9.08 -39.18 -0.36 0.41 16 25 C 0.13 2.35 8.53 -2.96 -0.03 2.32 16 26 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.08 1.58 8.09 -51.93 -0.42 1.16 16 30 H 0.15 1.76 7.60 -52.48 -0.40 1.36 16 31 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 32 H 0.40 2.57 9.06 45.56 0.41 2.99 16 33 H 0.42 2.05 9.11 45.56 0.42 2.46 16 34 H 0.16 2.04 7.14 -52.49 -0.38 1.66 16 35 H 0.08 1.39 8.09 -51.93 -0.42 0.97 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 337.18 15.07 5.08 5.08 Total: -1.00 -33.14 337.18 -8.49 -41.63 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -2.02 Total: 4.20 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -2.73 Total: -11.63 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.25 Total: -42.30 kcal Atomic # 8 Polarization: -52.92 SS G_CDS: -3.38 Total: -56.30 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 45.25 SS G_CDS: -0.67 Total: 44.58 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.14 -8.49 -41.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260392884.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.065 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds