Wall clock time and date at job start Tue Mar 31 2020 15:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00155 * 2 1 4 4 H 1.48499 * 109.47199 * 269.99589 * 3 2 1 5 5 H 1.48497 * 109.47283 * 29.99624 * 3 2 1 6 6 H 1.48499 * 109.47112 * 149.99748 * 3 2 1 7 7 C 1.37878 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.53950 * 113.74161 * 81.25908 * 9 7 2 11 11 N 1.47925 * 85.99684 * 138.00415 * 10 9 7 12 12 S 1.65601 * 134.49825 * 155.35639 * 11 10 9 13 13 O 1.42097 * 106.40419 * 23.54043 * 12 11 10 14 14 O 1.42099 * 106.40102 * 156.46064 * 12 11 10 15 15 C 1.76197 * 107.22066 * 269.99784 * 12 11 10 16 16 C 1.38566 * 119.84650 * 89.99948 * 15 12 11 17 17 C 1.38051 * 120.40416 * 180.02562 * 16 15 12 18 18 C 1.38705 * 120.09062 * 359.95475 * 17 16 15 19 19 O 1.35641 * 120.15603 * 180.02562 * 18 17 16 20 20 C 1.40198 * 119.69164 * 0.02776 * 18 17 16 21 21 C 1.47398 * 120.20040 * 180.02562 * 20 18 17 22 22 O 1.21518 * 119.99711 * 359.97438 * 21 20 18 23 23 O 1.34748 * 120.00257 * 179.97438 * 21 20 18 24 24 C 1.37767 * 119.84771 * 269.73627 * 15 12 11 25 25 C 1.47579 * 91.00789 * 335.35638 * 11 10 9 26 26 H 0.96999 * 119.99516 * 0.02562 * 1 2 3 27 27 H 1.09002 * 112.94317 * 309.66485 * 9 7 2 28 28 H 1.09006 * 113.76402 * 252.36573 * 10 9 7 29 29 H 1.08997 * 113.76968 * 23.75198 * 10 9 7 30 30 H 1.08004 * 119.79785 * 359.97438 * 16 15 12 31 31 H 1.08001 * 119.95179 * 179.97438 * 17 16 15 32 32 H 0.96695 * 113.99653 * 90.00105 * 19 18 17 33 33 H 0.96706 * 116.99926 * 180.02562 * 23 21 20 34 34 H 1.07998 * 120.04381 * 359.96919 * 24 15 12 35 35 H 1.09003 * 113.77049 * 270.34039 * 25 11 10 36 36 H 1.08993 * 113.77081 * 138.93800 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.7561 -2.9292 -1.3924 11 7 1.1904 -4.2911 -1.0121 12 16 0.7606 -5.8199 -1.4816 13 8 0.2036 -5.6983 -2.7832 14 8 1.8700 -6.6572 -1.1861 15 6 -0.5506 -6.3404 -0.4260 16 6 -1.8651 -6.0830 -0.7808 17 6 -2.9013 -6.4852 0.0379 18 6 -2.6319 -7.1523 1.2238 19 8 -3.6491 -7.5486 2.0290 20 6 -1.3034 -7.4151 1.5864 21 6 -1.0043 -8.1237 2.8438 22 8 -1.9106 -8.4816 3.5699 23 8 0.2740 -8.3747 3.1882 24 6 -0.2644 -7.0063 0.7456 25 6 2.1608 -3.7402 -0.0462 26 1 -0.4849 0.8401 -0.0004 27 1 0.4833 -2.5466 0.7730 28 1 -0.3213 -2.8307 -1.5255 29 1 1.3285 -2.4988 -2.2141 30 1 -2.0803 -5.5638 -1.7031 31 1 -3.9232 -6.2805 -0.2455 32 1 -3.9804 -8.4363 1.8360 33 1 0.4204 -8.8425 4.0218 34 1 0.7615 -7.2089 1.0157 35 1 3.1449 -3.5476 -0.4734 36 1 2.2040 -4.2889 0.8945 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260392884.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:49 Heat of formation + Delta-G solvation = -165.356108 kcal Electronic energy + Delta-G solvation = -25553.474586 eV Core-core repulsion = 21516.414493 eV Total energy + Delta-G solvation = -4037.060093 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.81075 -40.19788 -39.65599 -38.35254 -38.10635 -37.03305 -36.99147 -34.51414 -32.82231 -31.48161 -29.99760 -26.78791 -26.30297 -25.99463 -24.37248 -22.93038 -21.45618 -19.99990 -19.71714 -19.33258 -18.99561 -18.43502 -18.11474 -17.44453 -17.20183 -17.00362 -16.53242 -16.39030 -16.31746 -15.68924 -15.35451 -14.68442 -14.59733 -14.47157 -14.25611 -13.76222 -13.59700 -13.45761 -13.31432 -13.19565 -13.19492 -13.06198 -12.79343 -12.65177 -12.49923 -12.26837 -12.18896 -11.95950 -11.53148 -11.02453 -10.89808 -10.52396 -10.48655 -10.36542 -9.82368 -8.09725 -6.18652 -0.87926 -0.65583 -0.32913 1.21963 1.49843 1.52821 1.60908 1.85534 1.89876 2.25271 2.50556 2.67730 2.82790 3.02576 3.23401 3.49552 3.72109 3.90436 4.08285 4.09522 4.22950 4.48473 4.54317 4.57683 4.68095 4.73557 4.82760 4.86024 4.93933 5.06570 5.18734 5.31349 5.46109 5.69077 5.90603 5.95317 6.34502 6.53358 6.87290 6.89820 7.50199 8.99720 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.003794 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.778603 B = 7379.194945 C = 7915.740598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.021 3.979 3 Si 0.951 3.049 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.066 0.934 9 C 0.021 3.979 10 C 0.141 3.859 11 N -1.042 6.042 12 S 2.720 3.280 13 O -0.981 6.981 14 O -0.979 6.979 15 C -0.703 4.703 16 C 0.027 3.973 17 C -0.169 4.169 18 C 0.230 3.770 19 O -0.484 6.484 20 C -0.199 4.199 21 C 0.535 3.465 22 O -0.523 6.523 23 O -0.506 6.506 24 C 0.052 3.948 25 C 0.132 3.868 26 H 0.262 0.738 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.163 0.837 31 H 0.181 0.819 32 H 0.423 0.577 33 H 0.437 0.563 34 H 0.162 0.838 35 H 0.085 0.915 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.309 -15.616 2.055 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.179 4.179 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.085 0.915 9 C 0.000 4.000 10 C 0.015 3.985 11 N -0.883 5.883 12 S 2.815 3.185 13 O -0.972 6.972 14 O -0.970 6.970 15 C -0.791 4.791 16 C 0.008 3.992 17 C -0.188 4.188 18 C 0.183 3.817 19 O -0.300 6.300 20 C -0.201 4.201 21 C 0.380 3.620 22 O -0.414 6.414 23 O -0.321 6.321 24 C 0.032 3.968 25 C 0.008 3.992 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.181 0.819 31 H 0.198 0.802 32 H 0.286 0.714 33 H 0.299 0.701 34 H 0.180 0.820 35 H 0.103 0.897 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.386 -15.615 1.404 16.280 hybrid contribution -0.260 0.256 0.876 0.949 sum -4.646 -15.360 2.279 16.208 Atomic orbital electron populations 1.70045 1.07264 1.27549 1.50908 1.25697 0.95503 1.02253 0.94479 0.85657 0.78854 0.79602 0.78117 1.20311 1.21591 1.19061 1.21415 0.93518 0.91004 1.50703 0.91535 1.20572 0.94460 0.91944 0.93003 1.23042 0.98847 0.75866 1.00700 1.60045 1.52146 1.19463 1.56634 1.00736 0.73280 0.71422 0.73016 1.93516 1.80419 1.86389 1.36843 1.93517 1.51199 1.66534 1.85738 1.30954 1.15661 1.17590 1.14901 1.21363 0.89978 0.89417 0.98430 1.21809 1.02181 1.01836 0.92995 1.18827 0.85672 0.89942 0.87268 1.84669 1.48801 1.39573 1.56969 1.19707 0.94678 1.09329 0.96431 1.20389 0.80854 0.75879 0.84896 1.90908 1.47429 1.50488 1.52619 1.84547 1.27571 1.72816 1.47122 1.21221 1.00435 0.86457 0.88655 1.23006 0.92815 0.92950 0.90435 0.92890 0.94052 0.91998 0.90981 0.81931 0.80211 0.71353 0.70059 0.82011 0.89707 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.45 13.29 21.45 0.28 -49.16 16 2 C 0.02 1.05 5.46 84.65 0.46 1.51 16 3 Si 0.95 40.47 29.54 68.60 2.03 42.50 16 4 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.53 -25.90 8.77 25.60 0.22 -25.68 16 8 H 0.07 3.15 7.81 -2.91 -0.02 3.13 16 9 C 0.02 0.95 3.60 -10.88 -0.04 0.91 16 10 C 0.14 5.76 8.55 86.42 0.74 6.50 16 11 N -1.04 -37.46 4.12 -528.90 -2.18 -39.64 16 12 S 2.72 89.16 6.23 -56.49 -0.35 88.80 16 13 O -0.98 -35.69 17.24 -128.00 -2.21 -37.90 16 14 O -0.98 -34.80 17.23 -128.00 -2.20 -37.01 16 15 C -0.70 -19.51 5.97 22.24 0.13 -19.38 16 16 C 0.03 0.66 9.50 22.30 0.21 0.87 16 17 C -0.17 -3.42 9.98 22.34 0.22 -3.20 16 18 C 0.23 5.14 6.72 22.86 0.15 5.29 16 19 O -0.48 -9.69 11.58 -68.63 -0.79 -10.49 16 20 C -0.20 -4.93 5.89 -20.02 -0.12 -5.05 16 21 C 0.54 12.67 8.26 70.23 0.58 13.25 16 22 O -0.52 -14.19 15.95 26.78 0.43 -13.76 16 23 O -0.51 -9.05 12.68 -56.58 -0.72 -9.77 16 24 C 0.05 1.36 9.08 22.53 0.20 1.56 16 25 C 0.13 4.81 8.53 86.49 0.74 5.55 16 26 H 0.26 13.54 8.31 -92.71 -0.77 12.77 16 27 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 29 H 0.07 2.99 8.09 -2.39 -0.02 2.97 16 30 H 0.16 3.51 7.60 -2.91 -0.02 3.49 16 31 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 32 H 0.42 4.37 9.06 -74.06 -0.67 3.70 16 33 H 0.44 3.40 9.11 -74.05 -0.67 2.72 16 34 H 0.16 3.99 7.14 -2.91 -0.02 3.97 16 35 H 0.08 2.95 8.09 -2.39 -0.02 2.93 16 36 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -69.54 337.18 -2.39 -71.93 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -0.18 Total: 12.36 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: 3.51 Total: -17.86 kcal Atomic # 7 Polarization: -86.90 SS G_CDS: -1.90 Total: -88.80 kcal Atomic # 8 Polarization: -103.43 SS G_CDS: -5.50 Total: -108.93 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Atomic # 16 Polarization: 89.16 SS G_CDS: -0.35 Total: 88.80 kcal Total: -69.54 -2.39 -71.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260392884.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.425 kcal (2) G-P(sol) polarization free energy of solvation -69.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds