Wall clock time and date at job start Tue Mar 31 2020 15:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 115.54776 * 2 1 4 4 N 1.46493 * 109.47395 * 65.11918 * 3 2 1 5 5 C 1.34775 * 120.00209 * 175.70461 * 4 3 2 6 6 O 1.21553 * 119.99920 * 0.02562 * 5 4 3 7 7 C 1.47882 * 120.00288 * 180.02562 * 5 4 3 8 8 C 1.39920 * 120.02881 * 0.02562 * 7 5 4 9 9 C 1.38320 * 120.36248 * 179.97438 * 8 7 5 10 10 C 1.37749 * 120.41634 * 359.97438 * 9 8 7 11 11 C 1.40753 * 120.03690 * 0.02992 * 10 9 8 12 12 C 1.41434 * 120.18068 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00101 * 154.63171 * 12 11 10 14 14 C 1.39936 * 119.99735 * 334.62931 * 12 11 10 15 15 N 1.30835 * 120.00097 * 329.24975 * 14 12 11 16 16 Si 1.86800 * 120.00158 * 149.52342 * 14 12 11 17 17 H 1.48496 * 109.47237 * 179.72308 * 16 14 12 18 18 H 1.48503 * 109.47193 * 299.72758 * 16 14 12 19 19 H 1.48496 * 109.47020 * 59.72465 * 16 14 12 20 20 C 1.39000 * 120.02894 * 180.30248 * 7 5 4 21 21 C 1.52995 * 117.49762 * 214.32590 * 2 1 3 22 22 C 1.52995 * 117.49762 * 145.66594 * 2 1 3 23 23 Cl 1.80303 * 117.49983 * 215.00352 * 22 2 1 24 24 Cl 1.80301 * 117.50090 * 359.97438 * 22 2 1 25 25 H 1.09002 * 109.47195 * 61.30551 * 1 2 3 26 26 H 1.08997 * 109.46932 * 181.30584 * 1 2 3 27 27 H 1.09001 * 109.47317 * 301.30384 * 1 2 3 28 28 H 1.08996 * 109.46780 * 305.11388 * 3 2 1 29 29 H 1.09002 * 109.46959 * 185.12463 * 3 2 1 30 30 H 0.97002 * 120.00463 * 355.71246 * 4 3 2 31 31 H 1.08008 * 119.81696 * 0.02836 * 8 7 5 32 32 H 1.08005 * 119.79686 * 180.02562 * 9 8 7 33 33 H 1.07997 * 119.98407 * 179.97438 * 10 9 8 34 34 H 0.96993 * 119.99699 * 354.13326 * 15 14 12 35 35 H 1.08002 * 120.20041 * 0.02828 * 20 7 5 36 36 H 1.08996 * 117.50148 * 359.97438 * 21 2 1 37 37 H 1.09002 * 117.49509 * 144.99856 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 7 1.8762 2.0716 1.2529 5 6 2.4240 3.2750 1.5141 6 8 3.1779 3.7871 0.7098 7 6 2.1078 3.9726 2.7792 8 6 1.2404 3.3835 3.7057 9 6 0.9404 4.0296 4.8914 10 6 1.4919 5.2597 5.1742 11 6 2.3666 5.8681 4.2544 12 6 2.9342 7.1313 4.5415 13 1 3.8724 7.4171 4.0893 14 6 2.2801 8.0108 5.4115 15 7 0.9742 8.0014 5.4914 16 14 3.2710 9.2035 6.4531 17 1 2.3488 10.0241 7.2784 18 1 4.1862 8.4428 7.3413 19 1 4.0658 10.0918 5.5674 20 6 2.6675 5.2166 3.0463 21 6 2.2364 -1.1208 -0.7653 22 6 2.2364 -1.1207 0.7654 23 17 3.7828 -0.7136 1.5984 24 17 1.2022 -2.3398 1.5990 25 1 -0.3634 0.4934 -0.9015 26 1 -0.3633 -1.0274 0.0234 27 1 -0.3634 0.5339 0.8781 28 1 1.8132 1.9631 -0.8406 29 1 3.2700 1.2668 -0.0918 30 1 1.2743 1.6632 1.8947 31 1 0.8035 2.4187 3.4943 32 1 0.2700 3.5664 5.6003 33 1 1.2525 5.7582 6.1019 34 1 0.4554 7.4467 4.8881 35 1 3.3337 5.6773 2.3319 36 1 1.6112 -1.8583 -1.2684 37 1 3.1713 -0.8747 -1.2688 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261335873.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:28 Heat of formation + Delta-G solvation = -19.811351 kcal Electronic energy + Delta-G solvation = -22423.691522 eV Core-core repulsion = 18831.608182 eV Total energy + Delta-G solvation = -3592.083341 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.81285 -38.69154 -37.20753 -36.29661 -36.10284 -34.06007 -33.70504 -29.97380 -29.86844 -28.98533 -26.76065 -25.07126 -22.82045 -22.42993 -20.95539 -19.97292 -19.66126 -18.23222 -16.94447 -16.32532 -15.77736 -15.46541 -14.75409 -14.62537 -14.20177 -14.08541 -13.88819 -13.65300 -13.43504 -12.94838 -12.74216 -12.66828 -12.45180 -12.38063 -11.92884 -11.86118 -11.80356 -11.42181 -11.31168 -11.00101 -10.93571 -10.67129 -10.61058 -10.43643 -10.23573 -9.98459 -9.60496 -9.28713 -8.98093 -8.84603 -7.82317 -7.75226 -7.29819 -4.50816 0.90190 1.88644 2.03720 2.65850 2.70495 3.13735 3.20025 3.34720 3.46354 3.67728 3.74676 3.97899 4.03846 4.34796 4.49326 4.52858 5.05508 5.16797 5.32863 5.34789 5.39168 5.50290 5.54999 5.71495 5.82172 5.99765 6.13162 6.63026 6.66482 6.78620 6.87787 7.17119 7.51010 7.57086 7.65464 7.75300 7.85838 8.09223 8.17039 8.64168 8.71567 8.77982 9.94656 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.024078 B = 0.002745 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.628464 B =10197.855170 C =10376.593278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.154 3.846 4 N -0.728 5.728 5 C 0.567 3.433 6 O -0.550 6.550 7 C -0.105 4.105 8 C -0.225 4.225 9 C -0.088 4.088 10 C -0.202 4.202 11 C 0.088 3.912 12 C -0.524 4.524 13 H 0.079 0.921 14 C 0.044 3.956 15 N -0.786 5.786 16 Si 1.062 2.938 17 H -0.274 1.274 18 H -0.273 1.273 19 H -0.275 1.275 20 C -0.156 4.156 21 C -0.130 4.130 22 C 0.002 3.998 23 Cl -0.080 7.080 24 Cl -0.093 7.093 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.401 0.599 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.298 0.702 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.800 -17.371 -9.179 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.107 4.107 3 C 0.030 3.970 4 N -0.382 5.382 5 C 0.358 3.642 6 O -0.429 6.429 7 C -0.108 4.108 8 C -0.245 4.245 9 C -0.107 4.107 10 C -0.222 4.222 11 C 0.085 3.915 12 C -0.551 4.551 13 H 0.097 0.903 14 C -0.180 4.180 15 N -0.408 5.408 16 Si 0.886 3.114 17 H -0.198 1.198 18 H -0.199 1.199 19 H -0.200 1.200 20 C -0.177 4.177 21 C -0.168 4.168 22 C -0.050 4.050 23 Cl -0.052 7.052 24 Cl -0.066 7.066 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.237 0.763 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.126 0.874 36 H 0.142 0.858 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.416 -15.905 -8.455 18.068 hybrid contribution -0.147 -1.699 -0.695 1.841 sum -1.563 -17.604 -9.149 19.901 Atomic orbital electron populations 1.21487 0.89489 1.03406 1.03715 1.22684 0.97096 0.91336 0.99548 1.20804 0.99861 0.88020 0.88347 1.45788 1.50757 1.20703 1.20940 1.18805 0.78833 0.79786 0.86807 1.90687 1.36620 1.66411 1.49182 1.19339 1.01791 0.96374 0.93311 1.20298 1.06420 1.00442 0.97360 1.20514 0.98852 0.95373 0.95936 1.21247 1.04861 0.96253 0.99841 1.17608 0.90885 0.93242 0.89752 1.20561 1.08633 1.00193 1.25719 0.90263 1.27040 0.96012 0.98846 0.96061 1.70477 1.06913 1.31037 1.32374 0.83681 0.75670 0.75570 0.76528 1.19840 1.19854 1.19993 1.21180 1.04367 0.95009 0.97099 1.24067 1.03805 0.99563 0.89340 1.26946 0.88357 0.97786 0.91878 1.98786 1.32214 1.93252 1.80980 1.98743 1.68137 1.58501 1.81240 0.90416 0.91099 0.90820 0.90233 0.90496 0.76261 0.89103 0.88694 0.87627 0.88884 0.87412 0.85780 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.17 37.16 0.34 -0.60 16 2 C -0.11 -0.92 2.15 -154.51 -0.33 -1.25 16 3 C 0.15 1.84 4.94 -4.04 -0.02 1.82 16 4 N -0.73 -10.91 5.43 -61.24 -0.33 -11.24 16 5 C 0.57 11.40 7.77 -12.31 -0.10 11.31 16 6 O -0.55 -12.60 16.33 5.32 0.09 -12.51 16 7 C -0.11 -2.35 5.87 -105.04 -0.62 -2.97 16 8 C -0.23 -4.63 9.55 -38.92 -0.37 -5.00 16 9 C -0.09 -1.92 10.01 -39.73 -0.40 -2.32 16 10 C -0.20 -4.99 8.15 -38.81 -0.32 -5.30 16 11 C 0.09 2.30 5.26 -106.87 -0.56 1.74 16 12 C -0.52 -13.81 8.93 -37.73 -0.34 -14.15 16 13 H 0.08 2.06 8.00 -52.49 -0.42 1.64 16 14 C 0.04 1.09 4.79 -17.34 -0.08 1.00 16 15 N -0.79 -20.36 12.39 55.55 0.69 -19.67 16 16 Si 1.06 21.23 30.03 -169.99 -5.10 16.13 16 17 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 18 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 20 C -0.16 -3.94 9.34 -38.44 -0.36 -4.30 16 21 C -0.13 -0.89 9.62 -26.70 -0.26 -1.14 16 22 C 0.00 0.02 3.61 -26.70 -0.10 -0.08 16 23 Cl -0.08 -0.96 27.80 -51.86 -1.44 -2.40 16 24 Cl -0.09 -0.89 27.64 -51.86 -1.43 -2.32 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.48 6.97 -51.93 -0.36 0.11 16 27 H 0.07 0.61 7.56 -51.93 -0.39 0.22 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.00 7.25 -51.93 -0.38 0.62 16 30 H 0.40 5.48 5.89 -40.82 -0.24 5.24 16 31 H 0.09 1.55 6.38 -52.48 -0.33 1.22 16 32 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 33 H 0.11 2.67 6.69 -52.49 -0.35 2.31 16 34 H 0.30 7.91 7.16 -40.82 -0.29 7.62 16 35 H 0.11 2.78 7.64 -52.49 -0.40 2.38 16 36 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 344.26 15.07 5.19 5.19 Total: -1.00 -28.99 344.26 -9.93 -38.93 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -4.08 Total: 9.14 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -3.50 Total: -21.24 kcal Atomic # 7 Polarization: -31.27 SS G_CDS: 0.36 Total: -30.91 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.10 Total: 16.13 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -2.88 Total: -4.72 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.99 -9.93 -38.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261335873.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.114 kcal (2) G-P(sol) polarization free energy of solvation -28.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds