Wall clock time and date at job start Tue Mar 31 2020 15:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 115.54776 * 2 1 4 4 N 1.46493 * 109.47395 * 65.11918 * 3 2 1 5 5 C 1.34775 * 120.00209 * 175.70461 * 4 3 2 6 6 O 1.21553 * 119.99920 * 0.02562 * 5 4 3 7 7 C 1.47882 * 120.00288 * 180.02562 * 5 4 3 8 8 C 1.39920 * 120.02881 * 0.02562 * 7 5 4 9 9 C 1.38320 * 120.36248 * 179.97438 * 8 7 5 10 10 C 1.37749 * 120.41634 * 359.97438 * 9 8 7 11 11 C 1.40753 * 120.03690 * 0.02992 * 10 9 8 12 12 C 1.41434 * 120.18068 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00101 * 154.63171 * 12 11 10 14 14 C 1.39936 * 119.99735 * 334.62931 * 12 11 10 15 15 N 1.30835 * 120.00097 * 329.24975 * 14 12 11 16 16 Si 1.86800 * 120.00158 * 149.52342 * 14 12 11 17 17 H 1.48496 * 109.47237 * 179.72308 * 16 14 12 18 18 H 1.48503 * 109.47193 * 299.72758 * 16 14 12 19 19 H 1.48496 * 109.47020 * 59.72465 * 16 14 12 20 20 C 1.39000 * 120.02894 * 180.30248 * 7 5 4 21 21 C 1.52995 * 117.49762 * 214.32590 * 2 1 3 22 22 C 1.52995 * 117.49762 * 145.66594 * 2 1 3 23 23 Cl 1.80303 * 117.49983 * 215.00352 * 22 2 1 24 24 Cl 1.80301 * 117.50090 * 359.97438 * 22 2 1 25 25 H 1.09002 * 109.47195 * 61.30551 * 1 2 3 26 26 H 1.08997 * 109.46932 * 181.30584 * 1 2 3 27 27 H 1.09001 * 109.47317 * 301.30384 * 1 2 3 28 28 H 1.08996 * 109.46780 * 305.11388 * 3 2 1 29 29 H 1.09002 * 109.46959 * 185.12463 * 3 2 1 30 30 H 0.97002 * 120.00463 * 355.71246 * 4 3 2 31 31 H 1.08008 * 119.81696 * 0.02836 * 8 7 5 32 32 H 1.08005 * 119.79686 * 180.02562 * 9 8 7 33 33 H 1.07997 * 119.98407 * 179.97438 * 10 9 8 34 34 H 0.96993 * 119.99699 * 354.13326 * 15 14 12 35 35 H 1.08002 * 120.20041 * 0.02828 * 20 7 5 36 36 H 1.08996 * 117.50148 * 359.97438 * 21 2 1 37 37 H 1.09002 * 117.49509 * 144.99856 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 7 1.8762 2.0716 1.2529 5 6 2.4240 3.2750 1.5141 6 8 3.1779 3.7871 0.7098 7 6 2.1078 3.9726 2.7792 8 6 1.2404 3.3835 3.7057 9 6 0.9404 4.0296 4.8914 10 6 1.4919 5.2597 5.1742 11 6 2.3666 5.8681 4.2544 12 6 2.9342 7.1313 4.5415 13 1 3.8724 7.4171 4.0893 14 6 2.2801 8.0108 5.4115 15 7 0.9742 8.0014 5.4914 16 14 3.2710 9.2035 6.4531 17 1 2.3488 10.0241 7.2784 18 1 4.1862 8.4428 7.3413 19 1 4.0658 10.0918 5.5674 20 6 2.6675 5.2166 3.0463 21 6 2.2364 -1.1208 -0.7653 22 6 2.2364 -1.1207 0.7654 23 17 3.7828 -0.7136 1.5984 24 17 1.2022 -2.3398 1.5990 25 1 -0.3634 0.4934 -0.9015 26 1 -0.3633 -1.0274 0.0234 27 1 -0.3634 0.5339 0.8781 28 1 1.8132 1.9631 -0.8406 29 1 3.2700 1.2668 -0.0918 30 1 1.2743 1.6632 1.8947 31 1 0.8035 2.4187 3.4943 32 1 0.2700 3.5664 5.6003 33 1 1.2525 5.7582 6.1019 34 1 0.4554 7.4467 4.8881 35 1 3.3337 5.6773 2.3319 36 1 1.6112 -1.8583 -1.2684 37 1 3.1713 -0.8747 -1.2688 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261335873.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:28 Heat of formation + Delta-G solvation = -35.256447 kcal Electronic energy + Delta-G solvation = -22424.361272 eV Core-core repulsion = 18831.608182 eV Total energy + Delta-G solvation = -3592.753090 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.15936 -39.80344 -38.93568 -37.05740 -36.95119 -35.85189 -35.09741 -31.74965 -31.68396 -29.68444 -27.95090 -26.94776 -24.18352 -23.38400 -22.78818 -21.50694 -20.70829 -19.84612 -18.22837 -17.49182 -17.11065 -16.75551 -16.37283 -15.95732 -15.79827 -15.66103 -15.27739 -14.78766 -14.43636 -14.27343 -14.17143 -13.90975 -13.70560 -13.44058 -13.13449 -13.08982 -12.72420 -12.63194 -12.54452 -12.38063 -12.20379 -12.15027 -11.93626 -11.77579 -11.43409 -11.37687 -10.96680 -10.81756 -10.71827 -10.20614 -9.70987 -9.60344 -9.25200 -6.50928 0.17122 0.22769 0.85446 1.13966 1.50223 1.57588 1.80215 1.84390 2.03286 2.30745 2.36046 2.65779 2.97331 3.30813 3.47965 3.51953 3.83172 3.92021 4.25912 4.40496 4.52307 4.57770 4.60187 4.72606 4.74222 4.80910 4.87986 4.92588 5.01989 5.23056 5.27081 5.33890 5.63102 5.66923 5.72785 5.81356 6.13400 6.23535 6.50960 6.71088 6.82524 7.18764 7.96553 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.024078 B = 0.002745 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.628464 B =10197.855170 C =10376.593278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.103 4.103 3 C 0.150 3.850 4 N -0.705 5.705 5 C 0.567 3.433 6 O -0.584 6.584 7 C -0.110 4.110 8 C -0.200 4.200 9 C -0.087 4.087 10 C -0.214 4.214 11 C 0.065 3.935 12 C -0.566 4.566 13 H 0.066 0.934 14 C 0.013 3.987 15 N -0.803 5.803 16 Si 1.113 2.887 17 H -0.266 1.266 18 H -0.263 1.263 19 H -0.261 1.261 20 C -0.188 4.188 21 C -0.103 4.103 22 C -0.011 4.011 23 Cl -0.110 7.110 24 Cl -0.092 7.092 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.410 0.590 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.094 0.906 34 H 0.283 0.717 35 H 0.085 0.915 36 H 0.152 0.848 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.052 -19.862 -9.655 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.105 4.105 3 C 0.027 3.973 4 N -0.357 5.357 5 C 0.356 3.644 6 O -0.466 6.466 7 C -0.113 4.113 8 C -0.220 4.220 9 C -0.106 4.106 10 C -0.233 4.233 11 C 0.063 3.937 12 C -0.594 4.594 13 H 0.084 0.916 14 C -0.205 4.205 15 N -0.425 5.425 16 Si 0.930 3.070 17 H -0.191 1.191 18 H -0.188 1.188 19 H -0.186 1.186 20 C -0.209 4.209 21 C -0.141 4.141 22 C -0.062 4.062 23 Cl -0.083 7.083 24 Cl -0.065 7.065 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.248 0.752 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.170 0.830 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.697 -18.456 -8.948 20.688 hybrid contribution 0.159 -1.169 -0.673 1.358 sum -2.538 -19.625 -9.621 22.004 Atomic orbital electron populations 1.21529 0.88168 1.04278 1.04011 1.22595 0.97799 0.89579 1.00489 1.20974 0.99855 0.89706 0.86747 1.45590 1.49178 1.18836 1.22066 1.18494 0.79021 0.81087 0.85797 1.90673 1.38325 1.67657 1.49944 1.19663 1.01175 0.95600 0.94844 1.20783 1.04004 1.01429 0.95760 1.20933 0.98480 0.94175 0.96966 1.21290 1.05204 0.97552 0.99296 1.17870 0.91676 0.93704 0.90451 1.20714 1.09008 1.01499 1.28186 0.91584 1.28370 0.96175 0.99635 0.96303 1.70594 1.07355 1.31658 1.32895 0.83063 0.74626 0.73926 0.75405 1.19071 1.18820 1.18583 1.21130 1.05872 0.96954 0.96943 1.24282 1.04131 0.98204 0.87503 1.27173 0.87404 0.98507 0.93145 1.98785 1.34253 1.93491 1.81730 1.98746 1.67905 1.58375 1.81495 0.89201 0.89897 0.91556 0.89623 0.91394 0.75185 0.84542 0.84954 0.88767 0.90519 0.89668 0.83032 0.84911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.17 71.98 0.66 -0.74 16 2 C -0.10 -1.48 2.15 -52.18 -0.11 -1.59 16 3 C 0.15 3.27 4.94 86.38 0.43 3.70 16 4 N -0.70 -19.64 5.43 -465.95 -2.53 -22.17 16 5 C 0.57 22.48 7.77 86.80 0.67 23.15 16 6 O -0.58 -27.17 16.33 -3.88 -0.06 -27.23 16 7 C -0.11 -4.88 5.87 -20.13 -0.12 -5.00 16 8 C -0.20 -7.73 9.55 22.70 0.22 -7.52 16 9 C -0.09 -3.63 10.01 22.17 0.22 -3.41 16 10 C -0.21 -10.67 8.15 22.77 0.19 -10.49 16 11 C 0.07 3.57 5.26 -21.32 -0.11 3.46 16 12 C -0.57 -31.52 8.93 23.47 0.21 -31.31 16 13 H 0.07 3.69 8.00 -2.91 -0.02 3.67 16 14 C 0.01 0.67 4.79 85.25 0.41 1.08 16 15 N -0.80 -42.89 12.39 21.83 0.27 -42.62 16 16 Si 1.11 43.51 30.03 68.60 2.06 45.56 16 17 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 18 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 19 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 20 C -0.19 -9.93 9.34 23.01 0.21 -9.71 16 21 C -0.10 -1.03 9.62 30.62 0.29 -0.74 16 22 C -0.01 -0.17 3.61 30.62 0.11 -0.06 16 23 Cl -0.11 -2.47 27.80 -2.72 -0.08 -2.54 16 24 Cl -0.09 -1.49 27.64 -2.72 -0.08 -1.57 16 25 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.08 0.77 6.97 -2.39 -0.02 0.76 16 27 H 0.07 0.86 7.56 -2.39 -0.02 0.85 16 28 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.07 1.66 7.25 -2.39 -0.02 1.65 16 30 H 0.41 9.87 5.89 -92.71 -0.55 9.32 16 31 H 0.14 4.01 6.38 -2.91 -0.02 3.99 16 32 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 33 H 0.09 4.87 6.69 -2.91 -0.02 4.85 16 34 H 0.28 15.67 7.16 -92.71 -0.66 15.01 16 35 H 0.09 4.74 7.64 -2.91 -0.02 4.72 16 36 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -66.75 344.26 3.54 -63.21 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.67 Total: 26.54 kcal Atomic # 6 Polarization: -42.46 SS G_CDS: 3.28 Total: -39.18 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: -2.26 Total: -64.79 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.06 Total: -27.23 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.06 Total: 45.56 kcal Atomic # 17 Polarization: -3.96 SS G_CDS: -0.15 Total: -4.11 kcal Total: -66.75 3.54 -63.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261335873.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.956 kcal (2) G-P(sol) polarization free energy of solvation -66.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds