Wall clock time and date at job start Tue Mar 31 2020 15:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 115.54752 * 2 1 4 4 N 1.46494 * 109.47387 * 295.00094 * 3 2 1 5 5 C 1.34780 * 120.00150 * 175.08174 * 4 3 2 6 6 O 1.21542 * 119.99948 * 359.97438 * 5 4 3 7 7 C 1.47887 * 119.99985 * 180.02562 * 5 4 3 8 8 C 1.39919 * 120.02434 * 359.97438 * 7 5 4 9 9 C 1.38330 * 120.35862 * 179.97438 * 8 7 5 10 10 C 1.37758 * 120.41130 * 359.97438 * 9 8 7 11 11 C 1.40755 * 120.03850 * 0.04304 * 10 9 8 12 12 C 1.41439 * 120.17747 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99560 * 25.28903 * 12 11 10 14 14 C 1.39936 * 119.99813 * 205.29111 * 12 11 10 15 15 N 1.30818 * 120.00125 * 17.13128 * 14 12 11 16 16 Si 1.86797 * 119.99569 * 197.13130 * 14 12 11 17 17 H 1.48498 * 109.47441 * 90.00225 * 16 14 12 18 18 H 1.48507 * 109.47165 * 210.00092 * 16 14 12 19 19 H 1.48506 * 109.47685 * 329.99791 * 16 14 12 20 20 C 1.38995 * 120.02452 * 179.71643 * 7 5 4 21 21 C 1.53003 * 117.50057 * 145.66999 * 2 1 3 22 22 C 1.52996 * 117.49983 * 214.33294 * 2 1 3 23 23 Cl 1.80304 * 117.49994 * 359.97438 * 22 2 1 24 24 Cl 1.80301 * 117.49940 * 144.99772 * 22 2 1 25 25 H 1.09000 * 109.47402 * 64.80527 * 1 2 3 26 26 H 1.09005 * 109.46775 * 184.80292 * 1 2 3 27 27 H 1.08998 * 109.47171 * 304.80155 * 1 2 3 28 28 H 1.09009 * 109.47152 * 175.00002 * 3 2 1 29 29 H 1.09002 * 109.47299 * 55.00340 * 3 2 1 30 30 H 0.97005 * 119.99928 * 355.08075 * 4 3 2 31 31 H 1.07993 * 119.82359 * 359.95215 * 8 7 5 32 32 H 1.08000 * 119.79670 * 179.97438 * 9 8 7 33 33 H 1.07997 * 119.98280 * 180.02562 * 10 9 8 34 34 H 0.97005 * 119.99925 * 179.97438 * 15 14 12 35 35 H 1.07998 * 120.20398 * 0.03136 * 20 7 5 36 36 H 1.08993 * 117.49724 * 215.00323 * 21 2 1 37 37 H 1.08998 * 117.49837 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 7 1.8738 2.0728 -1.2517 5 6 2.2672 3.3489 -1.4339 6 8 2.8838 3.9255 -0.5595 7 6 1.9477 4.0480 -2.6973 8 6 1.2374 3.3849 -3.7041 9 6 0.9343 4.0324 -4.8883 10 6 1.3276 5.3371 -5.0902 11 6 2.0432 6.0203 -4.0890 12 6 2.4489 7.3597 -4.2934 13 1 1.9036 7.9902 -4.9801 14 6 3.5567 7.8679 -3.6058 15 7 4.4103 7.0502 -3.0454 16 14 3.8165 9.7140 -3.4882 17 1 3.1374 10.2331 -2.2739 18 1 5.2704 10.0049 -3.4048 19 1 3.2484 10.3717 -4.6924 20 6 2.3481 5.3660 -2.8834 21 6 2.2365 -1.1207 0.7654 22 6 2.2364 -1.1207 -0.7654 23 17 1.2023 -2.3407 -1.5978 24 17 3.7829 -0.7135 -1.5983 25 1 -0.3634 0.4375 -0.9299 26 1 -0.3633 -1.0241 0.0861 27 1 -0.3633 0.5865 0.8438 28 1 3.2703 1.2667 0.0896 29 1 1.8148 1.9624 0.8419 30 1 1.3814 1.6127 -1.9495 31 1 0.9244 2.3620 -3.5560 32 1 0.3860 3.5118 -5.6595 33 1 1.0869 5.8361 -6.0173 34 1 5.1784 7.4024 -2.5691 35 1 2.8933 5.8829 -2.1076 36 1 3.1713 -0.8746 1.2689 37 1 1.6113 -1.8583 1.2685 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261335874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:32 Heat of formation + Delta-G solvation = -12.508587 kcal Electronic energy + Delta-G solvation = -22586.786935 eV Core-core repulsion = 18995.020266 eV Total energy + Delta-G solvation = -3591.766669 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.67817 -38.55848 -36.96409 -36.23497 -36.02667 -33.88820 -33.49467 -30.30395 -29.43595 -28.93785 -26.75690 -25.20243 -22.75215 -22.26364 -20.95160 -19.82445 -19.37285 -17.75979 -16.80577 -16.11539 -15.58028 -15.48028 -14.93934 -14.60507 -14.41351 -13.85430 -13.67312 -13.44504 -13.15467 -12.86302 -12.62006 -12.57532 -12.47127 -12.32473 -11.80024 -11.75098 -11.62806 -11.36284 -11.17182 -11.08990 -10.94120 -10.71931 -10.53862 -10.49169 -10.02030 -9.90598 -9.67944 -9.21813 -9.03459 -8.69186 -7.62102 -7.50749 -6.78718 -4.40867 0.95800 1.94890 2.21336 2.73439 2.82222 3.08430 3.11529 3.16200 3.58135 3.75112 3.87684 3.93004 4.13550 4.43382 4.59235 4.66076 5.11891 5.24463 5.43062 5.44036 5.58530 5.62273 5.67320 5.84282 5.92097 6.09886 6.28452 6.72248 6.79109 6.99481 7.02080 7.21876 7.38887 7.70512 7.76005 7.92651 8.08020 8.19373 8.51215 8.81199 8.84049 8.93574 10.16270 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.021271 B = 0.003044 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.061167 B = 9197.239964 C = 9615.209842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 C 0.155 3.845 4 N -0.731 5.731 5 C 0.567 3.433 6 O -0.546 6.546 7 C -0.127 4.127 8 C -0.215 4.215 9 C -0.098 4.098 10 C -0.211 4.211 11 C 0.099 3.901 12 C -0.461 4.461 13 H 0.081 0.919 14 C 0.074 3.926 15 N -0.784 5.784 16 Si 0.911 3.089 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.091 4.091 21 C -0.130 4.130 22 C 0.001 3.999 23 Cl -0.095 7.095 24 Cl -0.079 7.079 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.400 0.600 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.284 0.716 35 H 0.133 0.867 36 H 0.123 0.877 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.083 -15.992 7.054 18.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.105 4.105 3 C 0.030 3.970 4 N -0.385 5.385 5 C 0.358 3.642 6 O -0.424 6.424 7 C -0.131 4.131 8 C -0.235 4.235 9 C -0.116 4.116 10 C -0.231 4.231 11 C 0.097 3.903 12 C -0.490 4.490 13 H 0.099 0.901 14 C -0.146 4.146 15 N -0.409 5.409 16 Si 0.735 3.265 17 H -0.192 1.192 18 H -0.202 1.202 19 H -0.186 1.186 20 C -0.111 4.111 21 C -0.168 4.168 22 C -0.051 4.051 23 Cl -0.068 7.068 24 Cl -0.052 7.052 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.236 0.764 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.151 0.849 36 H 0.141 0.859 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.346 -15.644 7.682 17.962 hybrid contribution 0.123 0.264 -0.536 0.611 sum -4.223 -15.380 7.145 17.476 Atomic orbital electron populations 1.21461 0.89492 1.03122 1.03798 1.22699 0.97101 0.91367 0.99346 1.20789 0.99431 0.87968 0.88787 1.45799 1.60360 1.14020 1.18313 1.18811 0.77551 0.80226 0.87629 1.90697 1.40578 1.66412 1.44710 1.19442 1.04434 0.96093 0.93098 1.20334 1.08571 0.98399 0.96217 1.20435 0.99993 0.95127 0.96060 1.21111 1.08466 0.94649 0.98831 1.17597 0.89814 0.93034 0.89884 1.19591 1.10691 0.96344 1.22420 0.90093 1.25951 0.94855 1.00459 0.93286 1.69788 1.09037 1.37040 1.24997 0.86273 0.78092 0.82285 0.79866 1.19163 1.20246 1.18600 1.21620 0.99435 0.92249 0.97791 1.24073 1.03838 0.99610 0.89320 1.26961 0.88370 0.97849 0.91886 1.98741 1.68183 1.58510 1.81336 1.98787 1.32228 1.93235 1.80963 0.90770 0.91302 0.90464 0.90970 0.89962 0.76431 0.89318 0.88921 0.88636 0.90473 0.84929 0.85868 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.05 37.16 0.34 -0.66 16 2 C -0.10 -0.97 2.13 -154.51 -0.33 -1.30 16 3 C 0.15 1.99 4.94 -4.04 -0.02 1.97 16 4 N -0.73 -11.66 5.42 -61.24 -0.33 -11.99 16 5 C 0.57 12.14 7.77 -12.31 -0.10 12.04 16 6 O -0.55 -13.40 16.33 5.33 0.09 -13.32 16 7 C -0.13 -2.99 5.87 -105.04 -0.62 -3.60 16 8 C -0.22 -4.51 9.55 -38.92 -0.37 -4.88 16 9 C -0.10 -2.09 10.01 -39.72 -0.40 -2.49 16 10 C -0.21 -5.00 9.78 -38.81 -0.38 -5.38 16 11 C 0.10 2.62 5.56 -106.87 -0.59 2.03 16 12 C -0.46 -12.13 9.05 -37.73 -0.34 -12.47 16 13 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 14 C 0.07 1.86 5.14 -17.35 -0.09 1.77 16 15 N -0.78 -20.83 10.98 55.55 0.61 -20.22 16 16 Si 0.91 18.82 29.59 -169.99 -5.03 13.79 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 19 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 20 C -0.09 -2.41 8.23 -38.44 -0.32 -2.73 16 21 C -0.13 -0.96 9.60 -26.69 -0.26 -1.22 16 22 C 0.00 0.01 3.61 -26.69 -0.10 -0.09 16 23 Cl -0.09 -0.93 27.79 -51.86 -1.44 -2.37 16 24 Cl -0.08 -0.99 27.80 -51.86 -1.44 -2.43 16 25 H 0.07 0.67 7.91 -51.93 -0.41 0.26 16 26 H 0.07 0.48 7.24 -51.93 -0.38 0.11 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 1.00 7.24 -51.92 -0.38 0.62 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.40 5.82 6.24 -40.82 -0.25 5.56 16 31 H 0.09 1.56 6.38 -52.49 -0.33 1.22 16 32 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.28 6.94 8.30 -40.82 -0.34 6.61 16 35 H 0.13 3.82 5.79 -52.49 -0.30 3.51 16 36 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 345.20 15.07 5.20 5.20 Total: -1.00 -29.58 345.20 -10.05 -39.63 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -4.14 Total: 8.71 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -3.57 Total: -17.01 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.28 Total: -32.21 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -2.88 Total: -4.80 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.58 -10.05 -39.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261335874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.124 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds