Wall clock time and date at job start Tue Mar 31 2020 15:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 115.54752 * 2 1 4 4 N 1.46494 * 109.47387 * 295.00094 * 3 2 1 5 5 C 1.34780 * 120.00150 * 175.08174 * 4 3 2 6 6 O 1.21542 * 119.99948 * 359.97438 * 5 4 3 7 7 C 1.47887 * 119.99985 * 180.02562 * 5 4 3 8 8 C 1.39919 * 120.02434 * 359.97438 * 7 5 4 9 9 C 1.38330 * 120.35862 * 179.97438 * 8 7 5 10 10 C 1.37758 * 120.41130 * 359.97438 * 9 8 7 11 11 C 1.40755 * 120.03850 * 0.04304 * 10 9 8 12 12 C 1.41439 * 120.17747 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99560 * 25.28903 * 12 11 10 14 14 C 1.39936 * 119.99813 * 205.29111 * 12 11 10 15 15 N 1.30818 * 120.00125 * 17.13128 * 14 12 11 16 16 Si 1.86797 * 119.99569 * 197.13130 * 14 12 11 17 17 H 1.48498 * 109.47441 * 90.00225 * 16 14 12 18 18 H 1.48507 * 109.47165 * 210.00092 * 16 14 12 19 19 H 1.48506 * 109.47685 * 329.99791 * 16 14 12 20 20 C 1.38995 * 120.02452 * 179.71643 * 7 5 4 21 21 C 1.53003 * 117.50057 * 145.66999 * 2 1 3 22 22 C 1.52996 * 117.49983 * 214.33294 * 2 1 3 23 23 Cl 1.80304 * 117.49994 * 359.97438 * 22 2 1 24 24 Cl 1.80301 * 117.49940 * 144.99772 * 22 2 1 25 25 H 1.09000 * 109.47402 * 64.80527 * 1 2 3 26 26 H 1.09005 * 109.46775 * 184.80292 * 1 2 3 27 27 H 1.08998 * 109.47171 * 304.80155 * 1 2 3 28 28 H 1.09009 * 109.47152 * 175.00002 * 3 2 1 29 29 H 1.09002 * 109.47299 * 55.00340 * 3 2 1 30 30 H 0.97005 * 119.99928 * 355.08075 * 4 3 2 31 31 H 1.07993 * 119.82359 * 359.95215 * 8 7 5 32 32 H 1.08000 * 119.79670 * 179.97438 * 9 8 7 33 33 H 1.07997 * 119.98280 * 180.02562 * 10 9 8 34 34 H 0.97005 * 119.99925 * 179.97438 * 15 14 12 35 35 H 1.07998 * 120.20398 * 0.03136 * 20 7 5 36 36 H 1.08993 * 117.49724 * 215.00323 * 21 2 1 37 37 H 1.08998 * 117.49837 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 7 1.8738 2.0728 -1.2517 5 6 2.2672 3.3489 -1.4339 6 8 2.8838 3.9255 -0.5595 7 6 1.9477 4.0480 -2.6973 8 6 1.2374 3.3849 -3.7041 9 6 0.9343 4.0324 -4.8883 10 6 1.3276 5.3371 -5.0902 11 6 2.0432 6.0203 -4.0890 12 6 2.4489 7.3597 -4.2934 13 1 1.9036 7.9902 -4.9801 14 6 3.5567 7.8679 -3.6058 15 7 4.4103 7.0502 -3.0454 16 14 3.8165 9.7140 -3.4882 17 1 3.1374 10.2331 -2.2739 18 1 5.2704 10.0049 -3.4048 19 1 3.2484 10.3717 -4.6924 20 6 2.3481 5.3660 -2.8834 21 6 2.2365 -1.1207 0.7654 22 6 2.2364 -1.1207 -0.7654 23 17 1.2023 -2.3407 -1.5978 24 17 3.7829 -0.7135 -1.5983 25 1 -0.3634 0.4375 -0.9299 26 1 -0.3633 -1.0241 0.0861 27 1 -0.3633 0.5865 0.8438 28 1 3.2703 1.2667 0.0896 29 1 1.8148 1.9624 0.8419 30 1 1.3814 1.6127 -1.9495 31 1 0.9244 2.3620 -3.5560 32 1 0.3860 3.5118 -5.6595 33 1 1.0869 5.8361 -6.0173 34 1 5.1784 7.4024 -2.5691 35 1 2.8933 5.8829 -2.1076 36 1 3.1713 -0.8746 1.2689 37 1 1.6113 -1.8583 1.2685 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261335874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:31 Heat of formation + Delta-G solvation = -28.722286 kcal Electronic energy + Delta-G solvation = -22587.490014 eV Core-core repulsion = 18995.020266 eV Total energy + Delta-G solvation = -3592.469748 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.05538 -39.72684 -38.70786 -37.03796 -36.92327 -35.65210 -35.00132 -32.08123 -31.27734 -29.67526 -28.03139 -27.02578 -24.03258 -23.35886 -22.78986 -21.23970 -20.54995 -19.43799 -18.10276 -17.34072 -17.13216 -16.80266 -16.52970 -16.20864 -15.71109 -15.25240 -15.06132 -14.72037 -14.38511 -14.26400 -14.17988 -13.74522 -13.45303 -13.38954 -13.09813 -12.95438 -12.81802 -12.62117 -12.54286 -12.51470 -12.19310 -12.17417 -11.89067 -11.78601 -11.49686 -11.33460 -11.08393 -10.77098 -10.68066 -10.14187 -9.45919 -9.37757 -8.65646 -6.38078 0.18239 0.38843 1.01278 1.15855 1.36815 1.48287 1.51107 1.88886 2.11523 2.19946 2.40937 2.79593 2.99118 3.33592 3.54191 3.70321 3.86170 4.05437 4.41581 4.54476 4.58707 4.59315 4.64070 4.75994 4.81729 4.89479 4.91927 5.09480 5.19188 5.24853 5.31460 5.41508 5.52753 5.86614 5.92943 6.05461 6.29036 6.49654 6.66790 6.88720 6.94949 7.30169 8.31370 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.021271 B = 0.003044 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.061167 B = 9197.239964 C = 9615.209842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.152 3.848 4 N -0.706 5.706 5 C 0.565 3.435 6 O -0.586 6.586 7 C -0.138 4.138 8 C -0.196 4.196 9 C -0.096 4.096 10 C -0.216 4.216 11 C 0.068 3.932 12 C -0.499 4.499 13 H 0.083 0.917 14 C 0.030 3.970 15 N -0.826 5.826 16 Si 0.983 3.017 17 H -0.265 1.265 18 H -0.270 1.270 19 H -0.251 1.251 20 C -0.128 4.128 21 C -0.104 4.104 22 C -0.010 4.010 23 Cl -0.091 7.091 24 Cl -0.109 7.109 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.409 0.591 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.108 0.892 34 H 0.286 0.714 35 H 0.098 0.902 36 H 0.132 0.868 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.750 -18.091 7.124 20.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.105 4.105 3 C 0.028 3.972 4 N -0.359 5.359 5 C 0.355 3.645 6 O -0.468 6.468 7 C -0.141 4.141 8 C -0.215 4.215 9 C -0.114 4.114 10 C -0.236 4.236 11 C 0.066 3.934 12 C -0.528 4.528 13 H 0.102 0.898 14 C -0.185 4.185 15 N -0.452 5.452 16 Si 0.804 3.196 17 H -0.190 1.190 18 H -0.195 1.195 19 H -0.174 1.174 20 C -0.149 4.149 21 C -0.142 4.142 22 C -0.061 4.061 23 Cl -0.064 7.064 24 Cl -0.082 7.082 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.247 0.753 31 H 0.149 0.851 32 H 0.155 0.845 33 H 0.126 0.874 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.150 0.850 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.047 -17.802 7.735 20.330 hybrid contribution 0.520 0.683 -0.565 1.028 sum -5.528 -17.119 7.169 19.365 Atomic orbital electron populations 1.21497 0.88163 1.04279 1.03782 1.22586 0.97811 0.89486 1.00596 1.20934 0.99435 0.89762 0.87046 1.45575 1.58557 1.12134 1.19621 1.18623 0.77568 0.81700 0.86651 1.90673 1.42606 1.67779 1.45738 1.19769 1.04099 0.95442 0.94805 1.20800 1.05917 0.99889 0.94943 1.20907 0.99174 0.94222 0.97079 1.21409 1.07681 0.95887 0.98652 1.17938 0.90996 0.93807 0.90639 1.19868 1.11815 0.97115 1.24020 0.89846 1.26837 0.94088 1.05154 0.92391 1.69890 1.09787 1.39137 1.26377 0.85189 0.78226 0.76214 0.80014 1.19025 1.19472 1.17437 1.21424 1.01809 0.94018 0.97638 1.24290 1.04131 0.98178 0.87569 1.27154 0.87390 0.98429 0.93140 1.98744 1.67875 1.58236 1.81535 1.98787 1.34232 1.93483 1.81693 0.91544 0.89700 0.89650 0.91834 0.89927 0.75318 0.85110 0.84536 0.87412 0.90345 0.88351 0.84997 0.82960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 9.05 71.98 0.65 -0.92 16 2 C -0.10 -1.66 2.13 -52.18 -0.11 -1.77 16 3 C 0.15 3.70 4.94 86.38 0.43 4.13 16 4 N -0.71 -21.68 5.42 -465.93 -2.52 -24.20 16 5 C 0.56 24.43 7.77 86.80 0.67 25.11 16 6 O -0.59 -29.95 16.33 -3.85 -0.06 -30.01 16 7 C -0.14 -6.53 5.87 -20.13 -0.12 -6.65 16 8 C -0.20 -7.76 9.55 22.70 0.22 -7.54 16 9 C -0.10 -3.84 10.01 22.18 0.22 -3.61 16 10 C -0.22 -10.19 9.78 22.77 0.22 -9.97 16 11 C 0.07 3.74 5.56 -21.32 -0.12 3.62 16 12 C -0.50 -27.35 9.05 23.47 0.21 -27.13 16 13 H 0.08 4.32 7.90 -2.91 -0.02 4.30 16 14 C 0.03 1.58 5.14 85.26 0.44 2.02 16 15 N -0.83 -46.45 10.98 21.82 0.24 -46.21 16 16 Si 0.98 39.90 29.59 68.60 2.03 41.93 16 17 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 18 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 19 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 20 C -0.13 -7.15 8.23 23.01 0.19 -6.96 16 21 C -0.10 -1.18 9.60 30.62 0.29 -0.88 16 22 C -0.01 -0.17 3.61 30.62 0.11 -0.06 16 23 Cl -0.09 -1.52 27.79 -2.72 -0.08 -1.60 16 24 Cl -0.11 -2.57 27.80 -2.72 -0.08 -2.65 16 25 H 0.07 0.98 7.91 -2.39 -0.02 0.96 16 26 H 0.08 0.86 7.24 -2.38 -0.02 0.84 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 1.71 7.24 -2.38 -0.02 1.69 16 29 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.41 10.88 6.24 -92.70 -0.58 10.30 16 31 H 0.13 4.03 6.38 -2.91 -0.02 4.01 16 32 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 33 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 34 H 0.29 14.83 8.30 -92.70 -0.77 14.06 16 35 H 0.10 6.10 5.79 -2.91 -0.02 6.09 16 36 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -68.88 345.20 3.38 -65.50 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.54 Total: 27.86 kcal Atomic # 6 Polarization: -33.93 SS G_CDS: 3.31 Total: -30.62 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -2.28 Total: -70.41 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.06 Total: -30.01 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Atomic # 17 Polarization: -4.09 SS G_CDS: -0.15 Total: -4.25 kcal Total: -68.88 3.38 -65.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261335874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.773 kcal (2) G-P(sol) polarization free energy of solvation -68.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds