Wall clock time and date at job start Tue Mar 31 2020 14:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00399 * 2 1 4 4 H 1.48501 * 109.47500 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46798 * 299.99603 * 3 2 1 6 6 H 1.48498 * 109.47255 * 59.99808 * 3 2 1 7 7 C 1.37885 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99798 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99643 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46556 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99600 * 180.02562 * 10 9 7 12 12 O 1.21367 * 119.99955 * 359.97438 * 11 10 9 13 13 C 1.49311 * 119.99822 * 179.97438 * 11 10 9 14 14 O 1.21387 * 119.99878 * 359.97438 * 13 11 10 15 15 N 1.34777 * 119.99822 * 179.97438 * 13 11 10 16 16 C 1.38751 * 119.99848 * 180.02562 * 15 13 11 17 17 N 1.28746 * 125.04277 * 180.02562 * 16 15 13 18 18 C 1.33840 * 118.17478 * 180.10993 * 17 16 15 19 19 C 1.33780 * 112.68851 * 359.52855 * 18 17 16 20 20 S 1.70670 * 125.04132 * 359.96835 * 16 15 13 21 21 C 1.51551 * 127.88016 * 180.53117 * 19 18 17 22 22 S 1.81702 * 108.70638 * 342.85535 * 21 19 18 23 23 C 1.81934 * 101.22087 * 44.42249 * 22 21 19 24 24 C 1.51833 * 120.21332 * 179.46685 * 18 17 16 25 25 H 0.97001 * 119.99388 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46795 * 60.00188 * 9 7 2 27 27 H 1.08997 * 109.47037 * 299.99826 * 9 7 2 28 28 H 0.96998 * 120.00000 * 359.97438 * 10 9 7 29 29 H 0.96998 * 120.00400 * 359.97438 * 15 13 11 30 30 H 1.08996 * 109.59764 * 223.08966 * 21 19 18 31 31 H 1.08994 * 109.59973 * 102.61853 * 21 19 18 32 32 H 1.09006 * 109.62347 * 175.43057 * 23 22 21 33 33 H 1.09000 * 109.78259 * 54.95546 * 23 22 21 34 34 H 1.09001 * 109.04864 * 39.17215 * 24 18 17 35 35 H 1.08996 * 109.04638 * 280.27901 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7535 -4.8834 0.0000 12 8 0.5602 -5.1051 0.0000 13 6 2.7237 -6.0183 -0.0006 14 8 3.9171 -5.7965 -0.0010 15 7 2.2743 -7.2890 -0.0006 16 6 3.1759 -8.3436 -0.0006 17 7 2.8551 -9.5905 -0.0010 18 6 3.8402 -10.4965 0.0013 19 6 5.0555 -9.9374 -0.0063 20 16 4.8748 -8.1805 -0.0013 21 6 6.4008 -10.6352 -0.0176 22 16 6.1645 -12.3645 0.4877 23 6 4.6897 -12.8168 -0.4768 24 6 3.5143 -11.9794 0.0131 25 1 -0.4849 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6239 -2.5566 0.8903 28 1 3.1565 -3.4355 0.0002 29 1 1.3207 -7.4662 0.0002 30 1 7.0756 -10.1394 0.6801 31 1 6.8213 -10.6023 -1.0226 32 1 4.4697 -13.8750 -0.3347 33 1 4.8652 -12.6182 -1.5341 34 1 2.6552 -12.1600 -0.6330 35 1 3.2626 -12.2802 1.0300 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342446580.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:55 Heat of formation + Delta-G solvation = -43.063940 kcal Electronic energy + Delta-G solvation = -21808.348075 eV Core-core repulsion = 18251.636590 eV Total energy + Delta-G solvation = -3556.711485 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.30727 -40.99486 -39.88589 -37.16403 -36.23914 -34.64267 -34.34234 -32.52804 -29.94340 -28.52447 -26.54240 -25.53085 -24.57476 -23.37389 -22.15340 -21.09616 -19.96414 -19.23561 -18.43177 -18.18390 -17.62357 -17.39692 -16.95337 -16.89599 -16.31862 -16.11601 -15.80847 -15.32572 -15.21110 -15.02011 -14.65666 -14.38233 -14.11805 -13.98278 -13.86998 -13.59701 -13.15038 -13.02638 -12.88284 -12.77376 -12.24888 -11.90895 -11.78959 -11.51102 -11.12449 -10.91001 -10.87952 -10.87730 -10.23519 -10.13422 -9.43257 -8.76812 -8.32467 -6.48225 -0.67393 -0.18436 0.13615 0.45236 0.75161 0.86946 1.44332 1.45039 1.45453 1.57270 1.58683 1.93444 2.25620 2.41830 3.03676 3.14440 3.28402 3.49966 3.77747 4.07146 4.13235 4.21056 4.33731 4.54742 4.58866 4.75532 4.84865 4.94176 5.12358 5.15380 5.15685 5.29182 5.52656 5.76328 6.05121 6.43947 6.51522 6.58696 6.89527 7.24462 8.79220 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.038263 B = 0.002210 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.602119 B =12666.326879 C =13334.683225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.981 3.019 4 H -0.257 1.257 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.560 4.560 8 H 0.082 0.918 9 C 0.262 3.738 10 N -0.664 5.664 11 C 0.505 3.495 12 O -0.549 6.549 13 C 0.524 3.476 14 O -0.489 6.489 15 N -0.592 5.592 16 C 0.235 3.765 17 N -0.524 5.524 18 C 0.084 3.916 19 C -0.275 4.275 20 S 0.249 5.751 21 C 0.002 3.998 22 S -0.262 6.262 23 C -0.071 4.071 24 C -0.039 4.039 25 H 0.270 0.730 26 H 0.009 0.991 27 H 0.009 0.991 28 H 0.416 0.584 29 H 0.439 0.561 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.141 0.859 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.029 -24.555 -1.294 27.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.805 3.195 4 H -0.180 1.180 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.598 4.598 8 H 0.100 0.900 9 C 0.140 3.860 10 N -0.315 5.315 11 C 0.284 3.716 12 O -0.429 6.429 13 C 0.305 3.695 14 O -0.362 6.362 15 N -0.244 5.244 16 C -0.133 4.133 17 N -0.248 5.248 18 C -0.047 4.047 19 C -0.398 4.398 20 S 0.499 5.501 21 C -0.148 4.148 22 S -0.036 6.036 23 C -0.219 4.219 24 C -0.080 4.080 25 H 0.079 0.921 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.254 0.746 29 H 0.281 0.719 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.159 0.841 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.569 -24.182 -0.574 27.735 hybrid contribution -1.355 0.977 -0.729 1.823 sum 12.214 -23.205 -1.303 26.256 Atomic orbital electron populations 1.70100 1.07965 1.28673 1.49557 1.25947 0.95786 1.03546 0.93759 0.85153 0.79040 0.77580 0.77743 1.18015 1.20391 1.20422 1.21586 0.94373 0.90373 1.53418 0.89963 1.18912 0.88271 0.82827 0.95955 1.46132 1.12774 1.04388 1.68170 1.19553 0.87806 0.84336 0.79886 1.90772 1.16721 1.84680 1.50701 1.20364 0.88859 0.83426 0.76859 1.90689 1.15935 1.83246 1.46327 1.42329 1.11488 1.01980 1.68584 1.22876 0.95709 0.89783 1.04920 1.66068 1.38285 0.98685 1.21733 1.20829 0.85796 0.96709 1.01323 1.26416 0.99474 0.98793 1.15085 1.85017 0.97124 0.99684 1.68238 1.21942 0.92627 0.93209 1.07032 1.87190 1.40102 1.12477 1.63840 1.23412 0.92344 1.04417 1.01723 1.20349 0.99000 0.84274 1.04385 0.92064 0.97319 0.97332 0.74650 0.71882 0.85550 0.86294 0.84100 0.88299 0.87778 0.88500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.97 13.29 21.45 0.28 -52.68 16 2 C 0.01 0.54 5.46 84.66 0.46 1.00 16 3 Si 0.98 41.02 29.54 68.60 2.03 43.04 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 5 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 6 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.56 -29.06 9.28 25.60 0.24 -28.82 16 8 H 0.08 3.94 7.60 -2.91 -0.02 3.92 16 9 C 0.26 13.31 5.43 85.63 0.46 13.78 16 10 N -0.66 -26.98 5.54 -468.27 -2.59 -29.57 16 11 C 0.51 19.00 7.88 87.23 0.69 19.69 16 12 O -0.55 -23.49 16.48 -3.30 -0.05 -23.54 16 13 C 0.52 16.20 7.85 87.23 0.68 16.88 16 14 O -0.49 -15.22 13.95 -3.36 -0.05 -15.27 16 15 N -0.59 -16.27 5.39 -315.95 -1.70 -17.97 16 16 C 0.24 6.24 8.17 179.54 1.47 7.70 16 17 N -0.52 -13.38 10.49 -188.01 -1.97 -15.36 16 18 C 0.08 1.75 6.61 41.60 0.28 2.02 16 19 C -0.27 -5.32 6.34 24.94 0.16 -5.16 16 20 S 0.25 5.72 20.17 -56.49 -1.14 4.58 16 21 C 0.00 0.03 6.78 71.51 0.49 0.51 16 22 S -0.26 -3.75 22.32 -56.49 -1.26 -5.01 16 23 C -0.07 -0.70 6.48 71.79 0.46 -0.23 16 24 C -0.04 -0.54 5.97 30.01 0.18 -0.36 16 25 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 26 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.42 15.07 7.79 -92.71 -0.72 14.35 16 29 H 0.44 11.35 8.29 -92.71 -0.77 10.58 16 30 H 0.13 1.53 8.14 -2.39 -0.02 1.52 16 31 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.14 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -64.04 331.84 -1.21 -65.25 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -0.32 Total: 19.51 kcal Atomic # 6 Polarization: 21.45 SS G_CDS: 5.57 Total: 27.01 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -5.98 Total: -115.58 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -0.10 Total: -38.81 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.40 Total: -0.43 kcal Total: -64.04 -1.21 -65.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342446580.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.189 kcal (2) G-P(sol) polarization free energy of solvation -64.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds