Wall clock time and date at job start Tue Mar 31 2020 15:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 115.55014 * 2 1 4 4 N 1.46490 * 109.47255 * 297.31065 * 3 2 1 5 5 C 1.34776 * 120.00104 * 174.81108 * 4 3 2 6 6 O 1.21586 * 119.99984 * 359.97438 * 5 4 3 7 7 C 1.47638 * 120.00245 * 179.97438 * 5 4 3 8 8 C 1.40017 * 119.89540 * 359.72406 * 7 5 4 9 9 C 1.36318 * 120.10645 * 179.71490 * 8 7 5 10 10 C 1.40892 * 119.89183 * 0.56225 * 9 8 7 11 11 C 1.41103 * 120.10523 * 179.74028 * 10 9 8 12 12 H 1.08003 * 120.00232 * 205.30968 * 11 10 9 13 13 C 1.40221 * 120.00156 * 25.30154 * 11 10 9 14 14 N 1.30650 * 120.00088 * 16.91907 * 13 11 10 15 15 Si 1.86807 * 120.00396 * 196.91872 * 13 11 10 16 16 H 1.48497 * 109.46810 * 90.00282 * 15 13 11 17 17 H 1.48498 * 109.46989 * 210.00155 * 15 13 11 18 18 H 1.48495 * 109.46797 * 330.00184 * 15 13 11 19 19 C 1.40891 * 119.79253 * 359.71453 * 10 9 8 20 20 C 1.36319 * 119.89271 * 359.97438 * 19 10 9 21 21 C 1.52998 * 117.49975 * 214.33414 * 2 1 3 22 22 C 1.52997 * 117.49806 * 145.67452 * 2 1 3 23 23 Cl 1.80302 * 117.49775 * 214.97946 * 22 2 1 24 24 Cl 1.80293 * 117.50168 * 359.97438 * 22 2 1 25 25 H 1.08998 * 109.47043 * 61.57304 * 1 2 3 26 26 H 1.09005 * 109.46833 * 181.57250 * 1 2 3 27 27 H 1.08999 * 109.46985 * 301.57243 * 1 2 3 28 28 H 1.09008 * 109.46561 * 57.31010 * 3 2 1 29 29 H 1.08992 * 109.47089 * 177.30525 * 3 2 1 30 30 H 0.97000 * 120.00658 * 354.81054 * 4 3 2 31 31 H 1.07999 * 119.94445 * 359.97438 * 8 7 5 32 32 H 1.07997 * 120.05631 * 180.27522 * 9 8 7 33 33 H 0.97002 * 120.00177 * 179.97438 * 14 13 11 34 34 H 1.07997 * 120.05196 * 179.97438 * 19 10 9 35 35 H 1.07995 * 119.94403 * 180.02562 * 20 19 10 36 36 H 1.09003 * 117.49483 * 0.02562 * 21 2 1 37 37 H 1.08997 * 117.50209 * 144.99323 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 1.8288 2.0943 -1.2272 5 6 2.2111 3.3752 -1.3990 6 8 2.8554 3.9384 -0.5352 7 6 1.8477 4.0945 -2.6360 8 6 1.1108 3.4421 -3.6318 9 6 0.7679 4.1039 -4.7731 10 6 1.1665 5.4430 -4.9550 11 6 0.8187 6.1306 -6.1370 12 1 1.4219 6.9596 -6.4769 13 6 -0.3099 5.7377 -6.8706 14 7 -1.2168 4.9777 -6.3168 15 14 -0.5167 6.3009 -8.6397 16 1 0.1125 5.3114 -9.5508 17 1 -1.9629 6.4160 -8.9566 18 1 0.1359 7.6228 -8.8178 19 6 1.9129 6.0935 -3.9526 20 6 2.2457 5.4254 -2.8119 21 6 2.2365 -1.1207 -0.7654 22 6 2.2364 -1.1208 0.7653 23 17 3.7832 -0.7139 1.5977 24 17 1.2023 -2.3400 1.5987 25 1 -0.3633 0.4892 -0.9037 26 1 -0.3633 -1.0273 0.0282 27 1 -0.3633 0.5381 0.8755 28 1 1.8458 1.9476 0.8650 29 1 3.2727 1.2655 0.0483 30 1 1.3145 1.6452 -1.9162 31 1 0.8099 2.4141 -3.4936 32 1 0.1956 3.6013 -5.5387 33 1 -1.9978 4.7061 -6.8241 34 1 2.2210 7.1197 -4.0879 35 1 2.8174 5.9233 -2.0429 36 1 1.6112 -1.8577 -1.2694 37 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344413144.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:35 Heat of formation + Delta-G solvation = -16.693932 kcal Electronic energy + Delta-G solvation = -22143.634700 eV Core-core repulsion = 18551.686540 eV Total energy + Delta-G solvation = -3591.948159 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.64673 -38.55181 -37.10271 -36.31796 -36.11164 -33.90250 -33.62839 -30.36021 -29.48507 -28.93726 -27.13291 -25.35967 -22.73376 -21.87776 -20.99185 -19.81931 -19.50967 -17.56848 -17.21735 -16.39588 -15.67897 -15.40373 -15.21211 -14.50343 -14.05609 -13.93994 -13.67547 -13.45987 -13.23136 -13.07925 -12.77804 -12.42743 -12.32906 -12.14202 -11.94289 -11.81442 -11.69214 -11.46914 -11.39938 -11.31735 -10.99970 -10.97851 -10.68404 -10.43038 -10.08604 -10.02364 -9.59370 -9.40341 -9.02666 -8.68060 -7.76134 -7.57475 -7.06365 -4.64137 0.86191 1.88294 2.18723 2.72842 2.89424 2.93417 2.95974 2.99904 3.58719 3.71389 3.82109 3.93521 4.06531 4.46750 4.52724 4.63692 5.19858 5.31376 5.46834 5.49185 5.52628 5.69029 5.72710 5.91751 5.98812 6.07575 6.28391 6.73337 6.79541 6.82560 7.00336 7.09461 7.39934 7.60657 7.74320 7.82410 8.03647 8.16440 8.36402 8.59733 8.71443 9.01094 9.85580 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.022666 B = 0.002502 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.030320 B =11189.887199 C =12037.151741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.102 4.102 3 C 0.156 3.844 4 N -0.738 5.738 5 C 0.573 3.427 6 O -0.573 6.573 7 C -0.284 4.284 8 C -0.063 4.063 9 C -0.177 4.177 10 C 0.129 3.871 11 C -0.442 4.442 12 H 0.085 0.915 13 C 0.074 3.926 14 N -0.773 5.773 15 Si 0.914 3.086 16 H -0.264 1.264 17 H -0.275 1.275 18 H -0.259 1.259 19 C -0.238 4.238 20 C -0.021 4.021 21 C -0.136 4.136 22 C 0.010 3.990 23 Cl -0.089 7.089 24 Cl -0.093 7.093 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.398 0.602 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.286 0.714 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.124 0.876 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.974 -13.570 7.130 15.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.103 4.103 3 C 0.031 3.969 4 N -0.392 5.392 5 C 0.368 3.632 6 O -0.455 6.455 7 C -0.288 4.288 8 C -0.082 4.082 9 C -0.196 4.196 10 C 0.126 3.874 11 C -0.470 4.470 12 H 0.103 0.897 13 C -0.147 4.147 14 N -0.396 5.396 15 Si 0.738 3.262 16 H -0.189 1.189 17 H -0.200 1.200 18 H -0.183 1.183 19 C -0.258 4.258 20 C -0.041 4.041 21 C -0.173 4.173 22 C -0.042 4.042 23 Cl -0.062 7.062 24 Cl -0.066 7.066 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.234 0.766 31 H 0.106 0.894 32 H 0.138 0.862 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.142 0.858 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.231 -13.346 7.858 15.537 hybrid contribution -0.439 -0.237 -0.839 0.976 sum 0.793 -13.583 7.019 15.310 Atomic orbital electron populations 1.21487 0.89443 1.03272 1.03874 1.22629 0.97111 0.91571 0.99010 1.20730 0.98994 0.87745 0.89410 1.45776 1.59468 1.13722 1.20212 1.18587 0.77659 0.79965 0.86996 1.90650 1.41877 1.67617 1.45307 1.18864 1.16397 0.96806 0.96747 1.20456 0.96545 0.96951 0.94237 1.20979 1.05542 0.94891 0.98209 1.17794 0.87512 0.91202 0.90939 1.19864 1.08048 1.13763 1.05323 0.89697 1.26095 0.94745 0.93387 1.00478 1.69737 1.06771 1.25664 1.37404 0.86199 0.78366 0.80478 0.81185 1.18935 1.20009 1.18281 1.20732 1.10315 0.99167 0.95570 1.20365 0.95085 0.92599 0.96025 1.24150 1.04137 1.00180 0.88865 1.26912 0.87607 0.97700 0.92012 1.98761 1.32861 1.93323 1.81205 1.98739 1.68195 1.58385 1.81252 0.90290 0.91189 0.90815 0.90489 0.90991 0.76621 0.89393 0.86176 0.90236 0.88361 0.88090 0.85822 0.85773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.14 37.16 0.34 -0.77 16 2 C -0.10 -1.01 2.15 -154.51 -0.33 -1.34 16 3 C 0.16 2.06 5.11 -4.05 -0.02 2.04 16 4 N -0.74 -11.39 5.37 -61.32 -0.33 -11.72 16 5 C 0.57 11.67 7.76 -12.42 -0.10 11.57 16 6 O -0.57 -13.30 16.32 5.29 0.09 -13.21 16 7 C -0.28 -6.24 5.89 -104.73 -0.62 -6.86 16 8 C -0.06 -1.33 9.47 -39.61 -0.38 -1.70 16 9 C -0.18 -4.19 8.63 -39.27 -0.34 -4.52 16 10 C 0.13 3.20 5.57 -106.80 -0.59 2.60 16 11 C -0.44 -10.77 9.05 -37.75 -0.34 -11.11 16 12 H 0.08 1.98 7.90 -52.48 -0.41 1.57 16 13 C 0.07 1.69 5.15 -17.31 -0.09 1.60 16 14 N -0.77 -18.03 10.94 55.56 0.61 -17.42 16 15 Si 0.91 16.91 29.59 -169.99 -5.03 11.88 16 16 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 17 H -0.28 -4.99 7.11 56.52 0.40 -4.59 16 18 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 19 C -0.24 -5.65 9.73 -39.27 -0.38 -6.03 16 20 C -0.02 -0.50 9.52 -39.61 -0.38 -0.87 16 21 C -0.14 -1.13 9.65 -26.70 -0.26 -1.39 16 22 C 0.01 0.09 3.61 -26.70 -0.10 0.00 16 23 Cl -0.09 -0.97 27.61 -51.86 -1.43 -2.40 16 24 Cl -0.09 -0.87 27.64 -51.86 -1.43 -2.31 16 25 H 0.08 0.71 7.69 -51.93 -0.40 0.31 16 26 H 0.07 0.55 6.96 -51.93 -0.36 0.19 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.11 8.13 -51.92 -0.42 0.69 16 29 H 0.07 1.00 6.91 -51.93 -0.36 0.65 16 30 H 0.40 5.39 6.01 -40.82 -0.25 5.14 16 31 H 0.09 1.54 6.37 -52.49 -0.33 1.21 16 32 H 0.12 2.88 6.17 -52.49 -0.32 2.55 16 33 H 0.29 6.01 8.29 -40.82 -0.34 5.67 16 34 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 35 H 0.10 2.26 7.63 -52.49 -0.40 1.86 16 36 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 343.79 15.07 5.18 5.18 Total: -1.00 -27.32 343.79 -10.02 -37.34 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -4.09 Total: 9.44 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -3.58 Total: -16.78 kcal Atomic # 7 Polarization: -29.42 SS G_CDS: 0.28 Total: -29.14 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -2.87 Total: -4.70 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.32 -10.02 -37.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344413144.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.644 kcal (2) G-P(sol) polarization free energy of solvation -27.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds