Wall clock time and date at job start Tue Mar 31 2020 15:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 115.55014 * 2 1 4 4 N 1.46490 * 109.47255 * 297.31065 * 3 2 1 5 5 C 1.34776 * 120.00104 * 174.81108 * 4 3 2 6 6 O 1.21586 * 119.99984 * 359.97438 * 5 4 3 7 7 C 1.47638 * 120.00245 * 179.97438 * 5 4 3 8 8 C 1.40017 * 119.89540 * 359.72406 * 7 5 4 9 9 C 1.36318 * 120.10645 * 179.71490 * 8 7 5 10 10 C 1.40892 * 119.89183 * 0.56225 * 9 8 7 11 11 C 1.41103 * 120.10523 * 179.74028 * 10 9 8 12 12 H 1.08003 * 120.00232 * 205.30968 * 11 10 9 13 13 C 1.40221 * 120.00156 * 25.30154 * 11 10 9 14 14 N 1.30650 * 120.00088 * 16.91907 * 13 11 10 15 15 Si 1.86807 * 120.00396 * 196.91872 * 13 11 10 16 16 H 1.48497 * 109.46810 * 90.00282 * 15 13 11 17 17 H 1.48498 * 109.46989 * 210.00155 * 15 13 11 18 18 H 1.48495 * 109.46797 * 330.00184 * 15 13 11 19 19 C 1.40891 * 119.79253 * 359.71453 * 10 9 8 20 20 C 1.36319 * 119.89271 * 359.97438 * 19 10 9 21 21 C 1.52998 * 117.49975 * 214.33414 * 2 1 3 22 22 C 1.52997 * 117.49806 * 145.67452 * 2 1 3 23 23 Cl 1.80302 * 117.49775 * 214.97946 * 22 2 1 24 24 Cl 1.80293 * 117.50168 * 359.97438 * 22 2 1 25 25 H 1.08998 * 109.47043 * 61.57304 * 1 2 3 26 26 H 1.09005 * 109.46833 * 181.57250 * 1 2 3 27 27 H 1.08999 * 109.46985 * 301.57243 * 1 2 3 28 28 H 1.09008 * 109.46561 * 57.31010 * 3 2 1 29 29 H 1.08992 * 109.47089 * 177.30525 * 3 2 1 30 30 H 0.97000 * 120.00658 * 354.81054 * 4 3 2 31 31 H 1.07999 * 119.94445 * 359.97438 * 8 7 5 32 32 H 1.07997 * 120.05631 * 180.27522 * 9 8 7 33 33 H 0.97002 * 120.00177 * 179.97438 * 14 13 11 34 34 H 1.07997 * 120.05196 * 179.97438 * 19 10 9 35 35 H 1.07995 * 119.94403 * 180.02562 * 20 19 10 36 36 H 1.09003 * 117.49483 * 0.02562 * 21 2 1 37 37 H 1.08997 * 117.50209 * 144.99323 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 1.8288 2.0943 -1.2272 5 6 2.2111 3.3752 -1.3990 6 8 2.8554 3.9384 -0.5352 7 6 1.8477 4.0945 -2.6360 8 6 1.1108 3.4421 -3.6318 9 6 0.7679 4.1039 -4.7731 10 6 1.1665 5.4430 -4.9550 11 6 0.8187 6.1306 -6.1370 12 1 1.4219 6.9596 -6.4769 13 6 -0.3099 5.7377 -6.8706 14 7 -1.2168 4.9777 -6.3168 15 14 -0.5167 6.3009 -8.6397 16 1 0.1125 5.3114 -9.5508 17 1 -1.9629 6.4160 -8.9566 18 1 0.1359 7.6228 -8.8178 19 6 1.9129 6.0935 -3.9526 20 6 2.2457 5.4254 -2.8119 21 6 2.2365 -1.1207 -0.7654 22 6 2.2364 -1.1208 0.7653 23 17 3.7832 -0.7139 1.5977 24 17 1.2023 -2.3400 1.5987 25 1 -0.3633 0.4892 -0.9037 26 1 -0.3633 -1.0273 0.0282 27 1 -0.3633 0.5381 0.8755 28 1 1.8458 1.9476 0.8650 29 1 3.2727 1.2655 0.0483 30 1 1.3145 1.6452 -1.9162 31 1 0.8099 2.4141 -3.4936 32 1 0.1956 3.6013 -5.5387 33 1 -1.9978 4.7061 -6.8241 34 1 2.2210 7.1197 -4.0879 35 1 2.8174 5.9233 -2.0429 36 1 1.6112 -1.8577 -1.2694 37 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344413144.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:34 Heat of formation + Delta-G solvation = -29.851290 kcal Electronic energy + Delta-G solvation = -22144.205246 eV Core-core repulsion = 18551.686540 eV Total energy + Delta-G solvation = -3592.518705 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.96793 -39.74425 -38.76736 -37.09619 -36.98599 -35.64674 -34.99265 -32.06844 -31.27658 -29.74362 -28.50164 -26.88881 -23.76033 -23.26096 -22.75875 -21.27526 -20.57280 -19.34278 -18.53643 -17.47172 -17.24923 -16.65243 -16.44419 -15.77361 -15.68590 -15.36326 -15.03066 -14.52068 -14.49276 -14.38239 -14.00695 -13.83261 -13.66190 -13.29267 -13.19120 -13.11623 -12.84753 -12.62323 -12.59424 -12.52537 -12.36354 -12.24177 -11.80032 -11.75085 -11.34703 -11.22540 -11.12138 -10.92088 -10.60794 -10.08634 -9.54907 -9.37785 -8.77036 -6.46717 0.09793 0.45761 1.10353 1.17431 1.40623 1.44721 1.54363 1.87353 2.14026 2.19101 2.51316 2.80341 3.07825 3.21329 3.54644 3.71094 3.84212 4.26459 4.34224 4.46675 4.55073 4.59851 4.63056 4.75739 4.81949 4.87086 4.94754 5.05265 5.17997 5.21918 5.32158 5.49462 5.61190 5.84105 5.96251 6.01500 6.25374 6.56247 6.70103 6.79515 6.91079 7.43743 8.17987 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.022666 B = 0.002502 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.030320 B =11189.887199 C =12037.151741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 C 0.157 3.843 4 N -0.716 5.716 5 C 0.574 3.426 6 O -0.605 6.605 7 C -0.291 4.291 8 C -0.051 4.051 9 C -0.196 4.196 10 C 0.102 3.898 11 C -0.475 4.475 12 H 0.083 0.917 13 C 0.039 3.961 14 N -0.797 5.797 15 Si 0.986 3.014 16 H -0.258 1.258 17 H -0.265 1.265 18 H -0.260 1.260 19 C -0.254 4.254 20 C -0.033 4.033 21 C -0.118 4.118 22 C 0.006 3.994 23 Cl -0.104 7.104 24 Cl -0.088 7.088 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.410 0.590 31 H 0.128 0.872 32 H 0.115 0.885 33 H 0.297 0.703 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.149 0.851 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.113 -15.445 6.301 16.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.106 4.106 3 C 0.033 3.967 4 N -0.369 5.369 5 C 0.367 3.633 6 O -0.490 6.490 7 C -0.295 4.295 8 C -0.070 4.070 9 C -0.215 4.215 10 C 0.099 3.901 11 C -0.502 4.502 12 H 0.101 0.899 13 C -0.180 4.180 14 N -0.421 5.421 15 Si 0.806 3.194 16 H -0.183 1.183 17 H -0.190 1.190 18 H -0.184 1.184 19 C -0.273 4.273 20 C -0.053 4.053 21 C -0.156 4.156 22 C -0.046 4.046 23 Cl -0.077 7.077 24 Cl -0.060 7.060 25 H 0.099 0.901 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.248 0.752 31 H 0.145 0.855 32 H 0.133 0.867 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.166 0.834 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.356 -15.266 7.042 16.816 hybrid contribution -0.170 0.290 -0.461 0.571 sum 0.186 -14.976 6.581 16.360 Atomic orbital electron populations 1.21505 0.88483 1.04178 1.03755 1.22464 0.97605 0.89982 1.00593 1.20746 0.99023 0.89256 0.87646 1.45533 1.58045 1.12150 1.21165 1.18376 0.77553 0.81291 0.86044 1.90635 1.43432 1.68779 1.46105 1.19144 1.15975 0.96676 0.97725 1.20730 0.94963 0.98507 0.92776 1.21024 1.06551 0.94747 0.99201 1.18140 0.88244 0.92166 0.91570 1.20104 1.09254 1.14578 1.06258 0.89897 1.26873 0.93748 0.93199 1.04170 1.69749 1.07246 1.26049 1.39046 0.85128 0.78643 0.79862 0.75750 1.18272 1.18960 1.18365 1.20858 1.10962 0.99597 0.95932 1.20506 0.95386 0.93517 0.95859 1.24323 1.04242 0.99152 0.87857 1.26986 0.87016 0.97689 0.92870 1.98763 1.33837 1.93464 1.81607 1.98744 1.67964 1.58000 1.81337 0.90060 0.89745 0.91375 0.91798 0.91510 0.75188 0.85465 0.86692 0.89191 0.88029 0.88106 0.83359 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 9.14 71.98 0.66 -1.22 16 2 C -0.10 -1.84 2.15 -52.18 -0.11 -1.95 16 3 C 0.16 3.94 5.11 86.38 0.44 4.39 16 4 N -0.72 -20.84 5.37 -466.18 -2.50 -23.34 16 5 C 0.57 22.94 7.76 86.73 0.67 23.62 16 6 O -0.61 -28.13 16.32 -3.99 -0.07 -28.20 16 7 C -0.29 -12.69 5.89 -19.93 -0.12 -12.81 16 8 C -0.05 -2.09 9.47 22.25 0.21 -1.88 16 9 C -0.20 -9.27 8.63 22.47 0.19 -9.08 16 10 C 0.10 5.17 5.57 -21.28 -0.12 5.05 16 11 C -0.47 -23.52 9.05 23.46 0.21 -23.31 16 12 H 0.08 3.97 7.90 -2.91 -0.02 3.95 16 13 C 0.04 1.77 5.15 85.35 0.44 2.21 16 14 N -0.80 -36.95 10.94 21.87 0.24 -36.71 16 15 Si 0.99 34.02 29.59 68.60 2.03 36.05 16 16 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 17 H -0.27 -8.66 7.11 99.48 0.71 -7.95 16 18 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 19 C -0.25 -12.40 9.73 22.47 0.22 -12.18 16 20 C -0.03 -1.57 9.52 22.25 0.21 -1.36 16 21 C -0.12 -1.60 9.65 30.62 0.30 -1.31 16 22 C 0.01 0.11 3.61 30.62 0.11 0.22 16 23 Cl -0.10 -2.14 27.61 -2.72 -0.08 -2.22 16 24 Cl -0.09 -1.45 27.64 -2.72 -0.08 -1.53 16 25 H 0.08 1.22 7.69 -2.39 -0.02 1.20 16 26 H 0.08 1.06 6.96 -2.38 -0.02 1.05 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.81 8.13 -2.38 -0.02 1.79 16 29 H 0.07 1.79 6.91 -2.39 -0.02 1.78 16 30 H 0.41 9.93 6.01 -92.71 -0.56 9.37 16 31 H 0.13 4.09 6.37 -2.91 -0.02 4.07 16 32 H 0.12 5.50 6.17 -2.91 -0.02 5.48 16 33 H 0.30 12.19 8.29 -92.71 -0.77 11.42 16 34 H 0.10 4.70 8.06 -2.91 -0.02 4.67 16 35 H 0.10 4.64 7.63 -2.91 -0.02 4.62 16 36 H 0.15 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -59.53 343.79 3.43 -56.10 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: 0.56 Total: 29.45 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 3.32 Total: -29.60 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -2.27 Total: -60.06 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.07 Total: -28.20 kcal Atomic # 14 Polarization: 34.02 SS G_CDS: 2.03 Total: 36.05 kcal Atomic # 17 Polarization: -3.59 SS G_CDS: -0.15 Total: -3.74 kcal Total: -59.53 3.43 -56.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344413144.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.247 kcal (2) G-P(sol) polarization free energy of solvation -59.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds