Wall clock time and date at job start Tue Mar 31 2020 15:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86800 * 120.00289 * 2 1 4 4 H 1.48504 * 109.46889 * 239.99933 * 3 2 1 5 5 H 1.48499 * 109.47091 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47072 * 119.99882 * 3 2 1 7 7 C 1.40029 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00166 * 196.76833 * 7 2 1 9 9 C 1.41545 * 120.00065 * 16.76811 * 7 2 1 10 10 C 1.41179 * 120.99478 * 203.66853 * 9 7 2 11 11 C 1.37584 * 119.02009 * 179.97438 * 10 9 7 12 12 N 1.32086 * 121.11099 * 359.97438 * 11 10 9 13 13 C 1.32485 * 122.22871 * 0.02562 * 12 11 10 14 14 N 1.39392 * 119.58128 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00009 * 5.20905 * 14 13 12 16 16 O 1.21608 * 120.00249 * 355.12735 * 15 14 13 17 17 C 1.47366 * 119.99755 * 175.13677 * 15 14 13 18 18 C 1.37381 * 128.56829 * 0.14404 * 17 15 14 19 19 O 1.33493 * 106.33604 * 180.28119 * 18 17 15 20 20 N 1.20663 * 113.16199 * 359.72311 * 19 18 17 21 21 C 1.30010 * 112.30479 * 359.97438 * 20 19 18 22 22 C 1.50703 * 127.33546 * 179.97438 * 21 20 19 23 23 F 1.39895 * 109.46925 * 5.03257 * 22 21 20 24 24 F 1.39899 * 109.46640 * 125.02636 * 22 21 20 25 25 F 1.39901 * 109.47291 * 245.02934 * 22 21 20 26 26 C 1.38623 * 120.83570 * 0.27000 * 13 12 11 27 27 H 0.96999 * 119.99850 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.49328 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.44893 * 180.02562 * 11 10 9 30 30 H 0.97005 * 119.99676 * 185.20608 * 14 13 12 31 31 H 1.07996 * 126.83032 * 359.96452 * 18 17 15 32 32 H 1.08000 * 120.60269 * 179.70385 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0531 -1.2326 0.2704 9 6 1.3448 -2.4126 -0.3526 10 6 1.8226 -3.6647 0.0914 11 6 1.1465 -4.8054 -0.2757 12 7 0.0650 -4.7444 -1.0314 13 6 -0.4239 -3.5952 -1.4739 14 7 -1.5689 -3.5951 -2.2688 15 6 -2.2315 -4.7464 -2.4963 16 8 -1.7827 -5.7982 -2.0826 17 6 -3.4998 -4.7307 -3.2465 18 6 -4.1595 -3.6558 -3.7911 19 8 -5.2626 -4.1430 -4.3637 20 7 -5.3657 -5.3401 -4.2530 21 6 -4.3704 -5.8628 -3.5999 22 6 -4.1579 -7.3174 -3.2684 23 9 -5.1581 -8.0848 -3.8748 24 9 -2.9061 -7.7253 -3.7413 25 9 -4.2123 -7.4924 -1.8814 26 6 0.1924 -2.3935 -1.1612 27 1 -0.4850 0.8401 -0.0004 28 1 2.7057 -3.7263 0.7100 29 1 1.5057 -5.7669 0.0604 30 1 -1.8888 -2.7662 -2.6583 31 1 -3.8501 -2.6216 -3.7578 32 1 -0.2067 -1.4593 -1.5279 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362105325.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:42 Heat of formation + Delta-G solvation = -74.578780 kcal Electronic energy + Delta-G solvation = -27038.522621 eV Core-core repulsion = 22360.390988 eV Total energy + Delta-G solvation = -4678.131633 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.062 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.20556 -47.76887 -47.64840 -45.56702 -39.76042 -37.90686 -34.66094 -34.45394 -33.98283 -32.55429 -30.66001 -28.87921 -27.38960 -26.12016 -25.09564 -22.24229 -22.14467 -21.84445 -20.11648 -19.27245 -18.79511 -18.37575 -18.01166 -17.93908 -17.76123 -16.32606 -15.81231 -15.36788 -14.91690 -14.74845 -14.50023 -14.47136 -14.32484 -14.12932 -14.08392 -13.81061 -13.78118 -13.57539 -12.99815 -12.71480 -12.59158 -12.47599 -12.24101 -11.55483 -11.30853 -11.06513 -10.99537 -10.44284 -10.31183 -10.19817 -9.94639 -9.82359 -9.46074 -8.12575 -7.88839 -7.19840 -6.93602 -4.72168 0.68943 0.92056 2.07535 2.46458 2.53158 2.70710 2.94215 2.97040 3.14289 3.16816 3.19550 3.47893 3.51797 3.76399 4.21612 4.22332 4.36859 4.52051 4.55758 4.86076 5.06602 5.56019 5.84767 6.39408 6.47983 6.69291 6.80858 6.97983 7.23024 7.30282 7.44537 7.57377 7.76480 8.02796 8.25462 8.50617 8.61829 8.66063 9.54149 9.95144 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.003248 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.418659 B = 8618.662835 C = 9691.393825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.079 3.921 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.454 4.454 8 H 0.083 0.917 9 C 0.144 3.856 10 C -0.281 4.281 11 C 0.122 3.878 12 N -0.554 5.554 13 C 0.335 3.665 14 N -0.644 5.644 15 C 0.569 3.431 16 O -0.450 6.450 17 C -0.197 4.197 18 C -0.003 4.003 19 O 0.131 5.869 20 N -0.299 5.299 21 C -0.040 4.040 22 C 0.562 3.438 23 F -0.170 7.170 24 F -0.150 7.150 25 F -0.154 7.154 26 C -0.240 4.240 27 H 0.283 0.717 28 H 0.104 0.896 29 H 0.126 0.874 30 H 0.407 0.593 31 H 0.242 0.758 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.961 -1.763 -7.787 12.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.140 4.140 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.485 4.485 8 H 0.101 0.899 9 C 0.136 3.864 10 C -0.305 4.305 11 C -0.032 4.032 12 N -0.273 5.273 13 C 0.111 3.889 14 N -0.290 5.290 15 C 0.351 3.649 16 O -0.319 6.319 17 C -0.205 4.205 18 C -0.083 4.083 19 O 0.058 5.942 20 N 0.005 4.995 21 C -0.203 4.203 22 C 0.507 3.493 23 F -0.151 7.151 24 F -0.131 7.131 25 F -0.136 7.136 26 C -0.265 4.265 27 H 0.094 0.906 28 H 0.122 0.878 29 H 0.143 0.857 30 H 0.242 0.758 31 H 0.258 0.742 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.423 -3.800 -8.262 13.833 hybrid contribution 1.272 2.092 0.560 2.512 sum -9.151 -1.708 -7.702 12.082 Atomic orbital electron populations 1.69759 1.07716 1.29621 1.34156 1.25957 0.94783 1.01535 0.91740 0.86295 0.80164 0.79708 0.80222 1.18651 1.20196 1.18811 1.19574 0.97953 0.90664 1.40326 0.89878 1.17546 0.89781 0.92309 0.86806 1.21924 1.05183 0.93846 1.09515 1.21765 0.90713 0.96955 0.93811 1.67188 1.15610 1.26352 1.18199 1.18053 0.86908 0.91107 0.92875 1.43079 1.26311 1.09610 1.50010 1.16825 0.81983 0.85290 0.80789 1.90968 1.65196 1.29291 1.46443 1.22518 1.00258 0.90924 1.06810 1.26620 0.86182 1.01208 0.94334 1.84600 1.37159 1.15613 1.56854 1.73723 1.19491 0.91544 1.14786 1.24639 0.94953 0.96326 1.04407 1.16466 0.74848 0.82571 0.75438 1.93233 1.61292 1.77265 1.83307 1.93310 1.40900 1.90907 1.88023 1.93294 1.95985 1.95580 1.28699 1.21509 1.02497 0.95298 1.07201 0.90574 0.87821 0.85678 0.75823 0.74238 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.11 10.92 55.55 0.61 -17.50 16 2 C 0.08 1.80 5.20 -17.35 -0.09 1.71 16 3 Si 0.91 16.88 29.59 -169.99 -5.03 11.85 16 4 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 5 H -0.28 -4.98 7.11 56.52 0.40 -4.57 16 6 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.45 -11.07 9.12 -37.65 -0.34 -11.41 16 8 H 0.08 1.94 7.90 -52.48 -0.41 1.53 16 9 C 0.14 3.58 5.60 -106.55 -0.60 2.98 16 10 C -0.28 -6.57 9.90 -38.70 -0.38 -6.96 16 11 C 0.12 2.79 11.15 -17.68 -0.20 2.60 16 12 N -0.55 -13.47 7.85 -12.53 -0.10 -13.57 16 13 C 0.33 7.55 7.41 -154.76 -1.15 6.40 16 14 N -0.64 -11.30 5.38 -12.49 -0.07 -11.37 16 15 C 0.57 10.15 7.77 -12.55 -0.10 10.05 16 16 O -0.45 -9.92 13.77 5.27 0.07 -9.85 16 17 C -0.20 -2.66 6.47 -102.89 -0.67 -3.32 16 18 C 0.00 -0.02 11.86 30.42 0.36 0.34 16 19 O 0.13 1.27 11.06 18.65 0.21 1.47 16 20 N -0.30 -3.76 11.85 34.79 0.41 -3.35 16 21 C -0.04 -0.57 6.83 -79.76 -0.54 -1.11 16 22 C 0.56 8.52 3.01 36.01 0.11 8.63 16 23 F -0.17 -2.36 17.19 2.25 0.04 -2.33 16 24 F -0.15 -2.47 16.41 2.25 0.04 -2.43 16 25 F -0.15 -2.53 17.20 2.25 0.04 -2.49 16 26 C -0.24 -5.63 8.62 -38.47 -0.33 -5.97 16 27 H 0.28 5.87 8.29 -40.82 -0.34 5.54 16 28 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 29 H 0.13 2.52 8.06 -52.49 -0.42 2.10 16 30 H 0.41 5.26 7.89 -40.82 -0.32 4.93 16 31 H 0.24 0.81 7.69 -52.49 -0.40 0.40 16 32 H 0.13 2.94 6.20 -52.49 -0.33 2.61 16 LS Contribution 309.58 15.07 4.67 4.67 Total: -1.00 -31.04 309.58 -4.49 -35.53 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -1.45 Total: 5.42 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -3.93 Total: 3.94 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.85 Total: -45.78 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.28 Total: -8.37 kcal Atomic # 9 Polarization: -7.36 SS G_CDS: 0.11 Total: -7.24 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.85 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.04 -4.49 -35.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362105325.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.049 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds