Wall clock time and date at job start Tue Mar 31 2020 15:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86800 * 120.00289 * 2 1 4 4 H 1.48504 * 109.46889 * 239.99933 * 3 2 1 5 5 H 1.48499 * 109.47091 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47072 * 119.99882 * 3 2 1 7 7 C 1.40029 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00166 * 196.76833 * 7 2 1 9 9 C 1.41545 * 120.00065 * 16.76811 * 7 2 1 10 10 C 1.41179 * 120.99478 * 203.66853 * 9 7 2 11 11 C 1.37584 * 119.02009 * 179.97438 * 10 9 7 12 12 N 1.32086 * 121.11099 * 359.97438 * 11 10 9 13 13 C 1.32485 * 122.22871 * 0.02562 * 12 11 10 14 14 N 1.39392 * 119.58128 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00009 * 5.20905 * 14 13 12 16 16 O 1.21608 * 120.00249 * 355.12735 * 15 14 13 17 17 C 1.47366 * 119.99755 * 175.13677 * 15 14 13 18 18 C 1.37381 * 128.56829 * 0.14404 * 17 15 14 19 19 O 1.33493 * 106.33604 * 180.28119 * 18 17 15 20 20 N 1.20663 * 113.16199 * 359.72311 * 19 18 17 21 21 C 1.30010 * 112.30479 * 359.97438 * 20 19 18 22 22 C 1.50703 * 127.33546 * 179.97438 * 21 20 19 23 23 F 1.39895 * 109.46925 * 5.03257 * 22 21 20 24 24 F 1.39899 * 109.46640 * 125.02636 * 22 21 20 25 25 F 1.39901 * 109.47291 * 245.02934 * 22 21 20 26 26 C 1.38623 * 120.83570 * 0.27000 * 13 12 11 27 27 H 0.96999 * 119.99850 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.49328 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.44893 * 180.02562 * 11 10 9 30 30 H 0.97005 * 119.99676 * 185.20608 * 14 13 12 31 31 H 1.07996 * 126.83032 * 359.96452 * 18 17 15 32 32 H 1.08000 * 120.60269 * 179.70385 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0531 -1.2326 0.2704 9 6 1.3448 -2.4126 -0.3526 10 6 1.8226 -3.6647 0.0914 11 6 1.1465 -4.8054 -0.2757 12 7 0.0650 -4.7444 -1.0314 13 6 -0.4239 -3.5952 -1.4739 14 7 -1.5689 -3.5951 -2.2688 15 6 -2.2315 -4.7464 -2.4963 16 8 -1.7827 -5.7982 -2.0826 17 6 -3.4998 -4.7307 -3.2465 18 6 -4.1595 -3.6558 -3.7911 19 8 -5.2626 -4.1430 -4.3637 20 7 -5.3657 -5.3401 -4.2530 21 6 -4.3704 -5.8628 -3.5999 22 6 -4.1579 -7.3174 -3.2684 23 9 -5.1581 -8.0848 -3.8748 24 9 -2.9061 -7.7253 -3.7413 25 9 -4.2123 -7.4924 -1.8814 26 6 0.1924 -2.3935 -1.1612 27 1 -0.4850 0.8401 -0.0004 28 1 2.7057 -3.7263 0.7100 29 1 1.5057 -5.7669 0.0604 30 1 -1.8888 -2.7662 -2.6583 31 1 -3.8501 -2.6216 -3.7578 32 1 -0.2067 -1.4593 -1.5279 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362105325.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:42 Heat of formation + Delta-G solvation = -94.017989 kcal Electronic energy + Delta-G solvation = -27039.365569 eV Core-core repulsion = 22360.390988 eV Total energy + Delta-G solvation = -4678.974581 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.062 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.39990 -48.94347 -48.88986 -46.53858 -41.28673 -39.54940 -36.20254 -35.64648 -35.53173 -33.59581 -32.43658 -30.50616 -28.54076 -27.90219 -26.28274 -23.88776 -23.35634 -23.22660 -21.61182 -20.33165 -19.93312 -19.57835 -19.41624 -19.18827 -19.03301 -17.68365 -17.26870 -16.93516 -16.24305 -16.06366 -16.03230 -15.77981 -15.73579 -15.66251 -15.29512 -15.04642 -15.00346 -14.86359 -14.58776 -14.35143 -14.19136 -13.70022 -13.23490 -13.18459 -12.90561 -12.63126 -12.09742 -12.02982 -11.92833 -11.58204 -11.37413 -11.13956 -11.12571 -9.94029 -9.64872 -8.90203 -8.64093 -6.54255 -0.26343 -0.05675 0.84572 1.00941 1.02195 1.45470 1.52389 1.54935 1.61365 1.99411 2.07895 2.08715 2.23119 2.43097 2.82154 3.03151 3.16905 3.30741 3.53360 3.74947 3.76729 4.23938 4.36926 4.73321 4.81708 4.93655 5.07860 5.24416 5.47463 5.57859 5.91120 6.11266 6.40531 6.54239 6.59533 6.79154 6.84622 7.11129 7.81272 8.27745 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.003248 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.418659 B = 8618.662835 C = 9691.393825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.045 3.955 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.485 4.485 8 H 0.082 0.918 9 C 0.115 3.885 10 C -0.297 4.297 11 C 0.114 3.886 12 N -0.581 5.581 13 C 0.334 3.666 14 N -0.633 5.633 15 C 0.572 3.428 16 O -0.501 6.501 17 C -0.234 4.234 18 C 0.060 3.940 19 O 0.155 5.845 20 N -0.303 5.303 21 C -0.059 4.059 22 C 0.559 3.441 23 F -0.165 7.165 24 F -0.163 7.163 25 F -0.167 7.167 26 C -0.252 4.252 27 H 0.295 0.705 28 H 0.114 0.886 29 H 0.146 0.854 30 H 0.428 0.572 31 H 0.299 0.701 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.035 0.895 -8.834 13.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.173 4.173 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.515 4.515 8 H 0.100 0.900 9 C 0.107 3.893 10 C -0.321 4.321 11 C -0.039 4.039 12 N -0.301 5.301 13 C 0.109 3.891 14 N -0.281 5.281 15 C 0.358 3.642 16 O -0.373 6.373 17 C -0.243 4.243 18 C -0.021 4.021 19 O 0.080 5.920 20 N 0.002 4.998 21 C -0.221 4.221 22 C 0.503 3.497 23 F -0.146 7.146 24 F -0.144 7.144 25 F -0.148 7.148 26 C -0.278 4.278 27 H 0.106 0.894 28 H 0.132 0.868 29 H 0.164 0.836 30 H 0.267 0.733 31 H 0.314 0.686 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.543 -1.150 -9.334 14.889 hybrid contribution 1.515 1.293 0.857 2.169 sum -10.028 0.143 -8.477 13.132 Atomic orbital electron populations 1.69767 1.08824 1.31232 1.33292 1.26719 0.95573 1.04236 0.90750 0.85215 0.78860 0.75500 0.79962 1.18449 1.18756 1.18912 1.19846 0.98250 0.91730 1.41705 0.90003 1.17967 0.90765 0.93091 0.87515 1.22089 1.05890 0.93842 1.10245 1.22145 0.90496 0.97849 0.93434 1.67314 1.16306 1.27331 1.19125 1.18274 0.87844 0.90401 0.92630 1.42946 1.24928 1.10927 1.49255 1.17234 0.82741 0.84336 0.79932 1.90940 1.66822 1.30959 1.48608 1.21979 0.99712 0.92697 1.09905 1.27547 0.83376 1.01850 0.89303 1.84619 1.37096 1.14503 1.55794 1.73749 1.18946 0.92581 1.14493 1.24490 0.96026 0.95771 1.05850 1.16616 0.74492 0.83666 0.74910 1.93233 1.60906 1.77362 1.83103 1.93276 1.41837 1.91189 1.88092 1.93260 1.96015 1.95763 1.29750 1.21515 1.02756 0.95705 1.07779 0.89410 0.86831 0.83637 0.73271 0.68602 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -36.12 10.92 21.84 0.24 -35.88 16 2 C 0.05 2.01 5.20 85.29 0.44 2.46 16 3 Si 0.98 33.35 29.59 68.60 2.03 35.38 16 4 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 5 H -0.26 -8.29 7.11 99.48 0.71 -7.58 16 6 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 7 C -0.49 -23.76 9.12 23.52 0.21 -23.55 16 8 H 0.08 3.87 7.90 -2.91 -0.02 3.85 16 9 C 0.11 5.79 5.60 -21.11 -0.12 5.68 16 10 C -0.30 -14.21 9.90 22.84 0.23 -13.98 16 11 C 0.11 5.36 11.15 84.50 0.94 6.30 16 12 N -0.58 -28.71 7.85 -193.57 -1.52 -30.23 16 13 C 0.33 15.09 7.41 132.78 0.98 16.07 16 14 N -0.63 -21.42 5.38 -311.67 -1.68 -23.10 16 15 C 0.57 20.06 7.77 86.65 0.67 20.73 16 16 O -0.50 -22.56 13.77 -4.06 -0.06 -22.61 16 17 C -0.23 -5.84 6.47 -18.74 -0.12 -5.96 16 18 C 0.06 0.73 11.86 67.62 0.80 1.54 16 19 O 0.15 2.36 11.06 76.97 0.85 3.21 16 20 N -0.30 -6.90 11.85 -44.76 -0.53 -7.43 16 21 C -0.06 -1.62 6.83 45.16 0.31 -1.31 16 22 C 0.56 17.17 3.01 71.24 0.21 17.39 16 23 F -0.16 -4.61 17.19 44.97 0.77 -3.83 16 24 F -0.16 -5.53 16.41 44.97 0.74 -4.79 16 25 F -0.17 -5.63 17.20 44.97 0.77 -4.86 16 26 C -0.25 -11.89 8.62 22.99 0.20 -11.69 16 27 H 0.29 11.66 8.29 -92.71 -0.77 10.89 16 28 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 29 H 0.15 5.96 8.06 -2.91 -0.02 5.94 16 30 H 0.43 9.90 7.89 -92.70 -0.73 9.17 16 31 H 0.30 -0.09 7.69 -2.91 -0.02 -0.11 16 32 H 0.13 5.98 6.20 -2.91 -0.02 5.96 16 Total: -1.00 -70.53 309.58 6.90 -63.64 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.51 Total: 16.85 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 4.77 Total: 13.66 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -3.49 Total: -96.64 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.80 Total: -19.40 kcal Atomic # 9 Polarization: -15.77 SS G_CDS: 2.28 Total: -13.48 kcal Atomic # 14 Polarization: 33.35 SS G_CDS: 2.03 Total: 35.38 kcal Total: -70.53 6.90 -63.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362105325.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.383 kcal (2) G-P(sol) polarization free energy of solvation -70.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds