Wall clock time and date at job start Tue Mar 31 2020 14:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47024 * 2 1 4 4 C 1.50699 * 109.47225 * 239.99870 * 2 1 3 5 5 H 1.08001 * 119.99592 * 240.00306 * 4 2 1 6 6 C 1.37879 * 119.99965 * 59.99874 * 4 2 1 7 7 N 1.31514 * 119.99744 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99700 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47656 * 59.99667 * 8 6 4 10 10 H 1.48500 * 109.47165 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47104 * 299.99842 * 8 6 4 12 12 N 1.46505 * 109.47095 * 119.99591 * 2 1 3 13 13 C 1.34776 * 119.99798 * 275.00589 * 12 2 1 14 14 O 1.21688 * 120.00386 * 359.97438 * 13 12 2 15 15 C 1.46644 * 119.99490 * 180.02562 * 13 12 2 16 16 C 1.36688 * 126.85607 * 180.02562 * 15 13 12 17 17 Br 1.89100 * 126.11861 * 359.94563 * 16 15 13 18 18 N 1.33235 * 107.76574 * 179.68087 * 16 15 13 19 19 C 1.31359 * 109.79563 * 0.22127 * 18 16 15 20 20 N 1.34264 * 109.01372 * 0.12901 * 19 18 16 21 21 C 1.46992 * 111.33727 * 179.76947 * 20 19 18 22 22 C 1.54398 * 105.48352 * 17.10893 * 21 20 19 23 23 C 1.51656 * 141.03773 * 180.23780 * 19 18 16 24 24 H 1.08998 * 109.47252 * 299.99979 * 1 2 3 25 25 H 1.08998 * 109.47273 * 60.00615 * 1 2 3 26 26 H 1.08999 * 109.46844 * 180.02562 * 1 2 3 27 27 H 0.97004 * 119.99230 * 180.02562 * 7 6 4 28 28 H 0.97000 * 119.99581 * 95.00063 * 12 2 1 29 29 H 1.09007 * 110.24742 * 136.11179 * 21 20 19 30 30 H 1.08996 * 110.24654 * 258.10760 * 21 20 19 31 31 H 1.09003 * 110.98210 * 92.44646 * 22 21 20 32 32 H 1.08997 * 110.98726 * 216.24456 * 22 21 20 33 33 H 1.09002 * 110.48221 * 282.06192 * 23 19 18 34 34 H 1.09001 * 110.48070 * 44.68818 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 1.8261 -2.5204 -4.0076 10 1 1.8271 -0.4201 -5.2204 11 1 3.8065 -1.1210 -4.0080 12 7 2.0184 -0.6905 1.1963 13 6 2.1470 -0.0181 2.3572 14 8 1.8579 1.1627 2.4117 15 6 2.6363 -0.7092 3.5544 16 6 2.8193 -0.1681 4.7962 17 35 2.4860 1.6265 5.2903 18 7 3.2689 -1.1328 5.5978 19 6 3.3835 -2.2542 4.9234 20 7 3.0089 -2.0403 3.6519 21 6 3.1228 -3.2652 2.8475 22 6 3.2118 -4.4212 3.8671 23 6 3.7947 -3.7026 5.1049 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7082 1.1607 -3.4844 28 1 2.2491 -1.6317 1.1527 29 1 2.2418 -3.3856 2.2168 30 1 4.0240 -3.2320 2.2353 31 1 2.2241 -4.8293 4.0818 32 1 3.8867 -5.2013 3.5149 33 1 4.8809 -3.7916 5.1210 34 1 3.3642 -4.1095 6.0199 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362272955.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:43 Heat of formation + Delta-G solvation = 13.610118 kcal Electronic energy + Delta-G solvation = -20011.611472 eV Core-core repulsion = 16798.133295 eV Total energy + Delta-G solvation = -3213.478176 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.76945 -40.40989 -37.62955 -36.71108 -34.50298 -33.18838 -32.48855 -30.96936 -29.18590 -28.56136 -27.37754 -24.51169 -22.94094 -22.24770 -21.54851 -21.17625 -19.24341 -18.02385 -17.63893 -17.21633 -16.52261 -16.13574 -15.91155 -15.28885 -15.20748 -14.92754 -14.55343 -14.34032 -14.22389 -13.74105 -13.34417 -13.06289 -12.91933 -12.78159 -12.51542 -12.49253 -12.30645 -12.19195 -11.69635 -11.61012 -11.57072 -11.17222 -10.75284 -10.70334 -10.59766 -9.99360 -9.52292 -8.19819 -6.38651 -0.01052 0.27375 1.44585 1.46608 1.47394 1.52192 1.55001 2.13790 2.19908 2.45467 2.78189 3.10894 3.34875 3.61228 3.79379 3.96977 4.13371 4.35504 4.53512 4.68614 4.70612 4.85640 4.87310 5.01454 5.03005 5.10177 5.14165 5.34556 5.48968 5.59142 5.68579 5.82012 6.03122 6.51241 6.64733 6.77587 7.19008 7.36736 8.86466 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.014394 B = 0.004673 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.729060 B = 5990.532510 C = 7638.289370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.273 3.727 3 H 0.003 0.997 4 C -0.550 4.550 5 H 0.074 0.926 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.975 3.025 9 H -0.260 1.260 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.697 5.697 13 C 0.569 3.431 14 O -0.554 6.554 15 C -0.042 4.042 16 C 0.063 3.937 17 Br 0.033 6.967 18 N -0.496 5.496 19 C 0.226 3.774 20 N -0.455 5.455 21 C 0.070 3.930 22 C -0.107 4.107 23 C -0.037 4.037 24 H 0.011 0.989 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.267 0.733 28 H 0.397 0.603 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.147 0.853 33 H 0.127 0.873 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.092 -14.283 14.385 21.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.170 3.830 3 H 0.021 0.979 4 C -0.588 4.588 5 H 0.092 0.908 6 C -0.184 4.184 7 N -0.553 5.553 8 Si 0.799 3.201 9 H -0.185 1.185 10 H -0.213 1.213 11 H -0.196 1.196 12 N -0.346 5.346 13 C 0.355 3.645 14 O -0.433 6.433 15 C -0.162 4.162 16 C -0.151 4.151 17 Br 0.116 6.884 18 N -0.216 5.216 19 C -0.039 4.039 20 N -0.139 5.139 21 C -0.049 4.049 22 C -0.145 4.145 23 C -0.076 4.076 24 H 0.030 0.970 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.233 0.767 29 H 0.119 0.881 30 H 0.134 0.866 31 H 0.120 0.880 32 H 0.165 0.835 33 H 0.145 0.855 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.788 -12.602 14.962 20.400 hybrid contribution -0.072 -0.180 -1.775 1.786 sum 5.716 -12.782 13.187 19.234 Atomic orbital electron populations 1.21904 0.98008 0.99515 0.99782 1.18452 0.91279 0.92127 0.81145 0.97877 1.21426 1.33052 1.13775 0.90511 0.90762 1.25810 0.94722 0.95529 1.02336 1.70048 1.36630 1.23818 1.24828 0.85360 0.78595 0.78811 0.77356 1.18479 1.21294 1.19601 1.46232 1.65148 1.13778 1.09448 1.17193 0.78589 0.86350 0.82393 1.90840 1.52004 1.15754 1.84696 1.20523 1.14292 0.84789 0.96606 1.22227 1.07503 0.94808 0.90579 1.96673 1.94418 1.04915 1.92345 1.69634 1.21451 0.97840 1.32672 1.25733 0.98505 0.98321 0.81341 1.46861 1.45684 1.07415 1.13904 1.23273 1.05816 0.79683 0.96086 1.22895 1.05373 0.95438 0.90809 1.21209 1.04285 0.80096 1.02028 0.96976 0.91080 0.94073 0.92424 0.76732 0.88110 0.86641 0.87996 0.83457 0.85473 0.85750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.76 9.26 71.98 0.67 -6.09 16 2 C 0.27 14.13 2.56 44.25 0.11 14.25 16 3 H 0.00 0.20 7.58 -2.39 -0.02 0.19 16 4 C -0.55 -28.33 8.73 25.60 0.22 -28.11 16 5 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 6 C 0.02 0.87 5.30 84.66 0.45 1.32 16 7 N -0.92 -51.68 11.32 21.45 0.24 -51.43 16 8 Si 0.97 40.48 29.54 68.60 2.03 42.50 16 9 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 10 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 12 N -0.70 -29.87 5.07 -450.10 -2.28 -32.15 16 13 C 0.57 25.20 7.75 86.44 0.67 25.87 16 14 O -0.55 -28.47 14.97 -4.31 -0.06 -28.53 16 15 C -0.04 -1.56 7.08 39.91 0.28 -1.27 16 16 C 0.06 2.34 7.62 84.12 0.64 2.98 16 17 Br 0.03 1.21 32.40 -20.37 -0.66 0.55 16 18 N -0.50 -16.22 11.21 -181.42 -2.03 -18.25 16 19 C 0.23 5.48 8.56 138.43 1.19 6.67 16 20 N -0.46 -12.02 3.59 -496.38 -1.78 -13.80 16 21 C 0.07 1.04 6.60 86.76 0.57 1.62 16 22 C -0.11 -0.57 7.18 31.59 0.23 -0.35 16 23 C -0.04 -0.35 6.86 30.67 0.21 -0.14 16 24 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.07 3.92 6.07 -2.39 -0.01 3.90 16 26 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 28 H 0.40 14.13 6.30 -92.71 -0.58 13.54 16 29 H 0.10 1.52 7.34 -2.38 -0.02 1.51 16 30 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.15 -0.25 8.14 -2.39 -0.02 -0.27 16 33 H 0.13 0.69 8.14 -2.39 -0.02 0.68 16 34 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -75.02 307.24 1.25 -73.77 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.56 Total: 10.60 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 5.24 Total: 16.74 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -5.85 Total: -115.63 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.06 Total: -28.53 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.50 kcal Atomic # 35 Polarization: 1.21 SS G_CDS: -0.66 Total: 0.55 kcal Total: -75.02 1.25 -73.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362272955.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.383 kcal (2) G-P(sol) polarization free energy of solvation -75.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds