Wall clock time and date at job start Tue Mar 31 2020 14:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46752 * 2 1 4 4 C 1.50700 * 109.47030 * 119.99986 * 2 1 3 5 5 H 1.08003 * 119.99290 * 120.00139 * 4 2 1 6 6 C 1.37876 * 120.00188 * 300.00439 * 4 2 1 7 7 N 1.31512 * 120.00031 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99901 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47247 * 59.99477 * 8 6 4 10 10 H 1.48503 * 109.46761 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46686 * 299.99740 * 8 6 4 12 12 N 1.46505 * 109.47488 * 240.00414 * 2 1 3 13 13 C 1.34776 * 119.99793 * 84.99443 * 12 2 1 14 14 O 1.21689 * 120.00391 * 0.02562 * 13 12 2 15 15 C 1.46644 * 119.99486 * 180.02562 * 13 12 2 16 16 C 1.36688 * 126.85601 * 180.02562 * 15 13 12 17 17 Br 1.89100 * 126.11861 * 359.93586 * 16 15 13 18 18 N 1.33235 * 107.76574 * 179.67110 * 16 15 13 19 19 C 1.31359 * 109.79560 * 0.22591 * 18 16 15 20 20 N 1.34263 * 109.01372 * 0.11691 * 19 18 16 21 21 C 1.46991 * 111.33699 * 179.80298 * 20 19 18 22 22 C 1.54397 * 105.48695 * 17.09580 * 21 20 19 23 23 C 1.51656 * 141.03773 * 180.23562 * 19 18 16 24 24 H 1.09001 * 109.47057 * 299.99971 * 1 2 3 25 25 H 1.09004 * 109.46733 * 59.99948 * 1 2 3 26 26 H 1.08997 * 109.46834 * 179.97438 * 1 2 3 27 27 H 0.96994 * 120.00294 * 179.97438 * 7 6 4 28 28 H 0.97000 * 119.99578 * 265.00550 * 12 2 1 29 29 H 1.09007 * 110.24456 * 136.09444 * 21 20 19 30 30 H 1.09002 * 110.24894 * 258.08722 * 21 20 19 31 31 H 1.08997 * 110.98381 * 92.44547 * 22 21 20 32 32 H 1.08996 * 110.98386 * 216.25361 * 22 21 20 33 33 H 1.09001 * 110.47973 * 282.04350 * 23 19 18 34 34 H 1.09002 * 110.47878 * 44.66247 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8301 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.8074 -1.1191 4.0077 10 1 1.8278 -0.4194 5.2204 11 1 1.8280 -2.5199 4.0080 12 7 2.0185 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8580 1.1627 -2.4117 15 6 2.6355 -0.7095 -3.5546 16 6 2.8192 -0.1682 -4.7962 17 35 2.4857 1.6264 -5.2903 18 7 3.2810 -1.1297 -5.5946 19 6 3.3933 -2.2517 -4.9208 20 7 2.9998 -2.0426 -3.6543 21 6 3.1008 -3.2709 -2.8531 22 6 4.0247 -4.2119 -3.6560 23 6 3.8197 -3.6962 -5.0983 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7088 1.1612 3.4844 28 1 2.2491 -1.6317 -1.1527 29 1 3.5399 -3.0514 -1.8799 30 1 2.1166 -3.7231 -2.7303 31 1 5.0631 -4.0984 -3.3447 32 1 3.7019 -5.2488 -3.5627 33 1 3.0372 -4.2659 -5.5997 34 1 4.7525 -3.7523 -5.6595 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362272956.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:46 Heat of formation + Delta-G solvation = 35.656160 kcal Electronic energy + Delta-G solvation = -20011.198408 eV Core-core repulsion = 16798.676219 eV Total energy + Delta-G solvation = -3212.522188 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.64577 -38.69823 -36.69625 -34.85873 -32.75244 -31.92474 -31.19911 -29.20840 -28.06129 -27.58773 -25.33502 -22.98077 -22.17887 -20.59522 -20.41536 -19.61424 -17.77587 -16.90497 -16.10550 -15.36422 -15.08343 -14.68243 -14.55903 -14.15711 -13.88440 -13.69049 -13.56535 -13.02323 -12.59451 -12.49158 -11.97235 -11.79487 -11.68420 -11.19499 -11.03339 -10.84810 -10.67953 -10.48181 -10.35254 -10.30966 -10.11532 -9.57980 -9.15099 -9.07711 -8.63958 -8.39177 -7.99352 -6.19624 -4.30170 1.31981 1.56662 2.52079 2.67176 3.18969 3.24741 3.25708 3.58691 3.75180 3.85095 4.09328 4.28337 4.36364 4.45409 4.86694 5.03790 5.06963 5.12538 5.26674 5.35829 5.48210 5.54699 5.90993 6.17822 6.67396 6.75810 6.88614 7.06066 7.31385 7.42995 7.57033 7.72439 7.82940 8.05999 8.48715 8.66264 8.92017 9.37076 10.86262 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.014392 B = 0.004683 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.047018 B = 5978.050819 C = 7639.384156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.266 3.734 3 H 0.053 0.947 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.069 3.931 7 N -0.880 5.880 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.276 1.276 12 N -0.703 5.703 13 C 0.570 3.430 14 O -0.514 6.514 15 C -0.009 4.009 16 C 0.071 3.929 17 Br 0.042 6.958 18 N -0.464 5.464 19 C 0.209 3.791 20 N -0.457 5.457 21 C 0.090 3.910 22 C -0.127 4.127 23 C -0.040 4.040 24 H 0.092 0.908 25 H 0.017 0.983 26 H 0.025 0.975 27 H 0.266 0.734 28 H 0.381 0.619 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.061 -10.187 -14.204 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.071 0.929 4 C -0.576 4.576 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.517 5.517 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.202 1.202 12 N -0.352 5.352 13 C 0.353 3.647 14 O -0.390 6.390 15 C -0.128 4.128 16 C -0.142 4.142 17 Br 0.125 6.875 18 N -0.184 5.184 19 C -0.055 4.055 20 N -0.141 5.141 21 C -0.031 4.031 22 C -0.165 4.165 23 C -0.079 4.079 24 H 0.111 0.889 25 H 0.036 0.964 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.213 0.787 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.110 0.890 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.741 -8.437 -14.776 17.663 hybrid contribution 0.254 -1.393 1.812 2.300 sum 4.995 -9.830 -12.964 17.019 Atomic orbital electron populations 1.22084 0.98181 0.99113 1.01187 1.18827 0.91185 0.94139 0.79399 0.92898 1.21104 1.32876 1.13344 0.90305 0.92369 1.24873 0.94714 0.94920 0.99013 1.69881 1.35464 1.22206 1.24155 0.86500 0.79171 0.79544 0.81832 1.20162 1.20987 1.20165 1.46549 1.65029 1.13138 1.10468 1.16845 0.79470 0.86685 0.81700 1.90878 1.50315 1.13929 1.83893 1.21150 1.11617 0.82050 0.97991 1.22064 1.07407 0.94567 0.90147 1.96716 1.94353 1.04038 1.92369 1.69624 1.19719 0.96899 1.32170 1.24395 1.02043 0.96794 0.82309 1.46551 1.46751 1.07727 1.13076 1.22699 1.02716 0.81544 0.96175 1.22775 1.00874 0.99747 0.93121 1.20768 1.03704 0.85418 0.97983 0.88925 0.96389 0.95587 0.92362 0.78667 0.87980 0.88084 0.88974 0.87470 0.88064 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 2 C 0.27 6.69 2.56 -69.08 -0.18 6.51 16 3 H 0.05 1.54 7.58 -51.93 -0.39 1.14 16 4 C -0.54 -13.90 8.73 -34.44 -0.30 -14.20 16 5 H 0.06 1.42 7.74 -52.48 -0.41 1.01 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.33 11.32 55.43 0.63 -23.70 16 8 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 9 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 N -0.70 -14.88 5.07 -56.25 -0.28 -15.17 16 13 C 0.57 12.23 7.75 -12.87 -0.10 12.13 16 14 O -0.51 -12.53 14.97 5.20 0.08 -12.45 16 15 C -0.01 -0.16 7.08 -81.99 -0.58 -0.74 16 16 C 0.07 1.31 7.62 -17.50 -0.13 1.17 16 17 Br 0.04 0.74 32.40 -68.01 -2.20 -1.47 16 18 N -0.46 -7.80 11.21 -8.69 -0.10 -7.89 16 19 C 0.21 2.79 8.56 -154.93 -1.33 1.47 16 20 N -0.46 -6.44 3.59 -108.24 -0.39 -6.83 16 21 C 0.09 0.82 6.60 -3.04 -0.02 0.80 16 22 C -0.13 -0.69 7.18 -25.19 -0.18 -0.87 16 23 C -0.04 -0.29 6.86 -26.60 -0.18 -0.47 16 24 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.38 6.91 6.30 -40.82 -0.26 6.65 16 29 H 0.10 0.94 7.34 -51.93 -0.38 0.56 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 307.25 15.07 4.63 4.63 Total: -1.00 -32.64 307.25 -9.26 -41.89 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -3.85 Total: 1.72 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -2.75 Total: 4.23 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.14 Total: -53.59 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.08 Total: -12.45 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 35 Polarization: 0.74 SS G_CDS: -2.20 Total: -1.47 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.64 -9.26 -41.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362272956.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.550 kcal (2) G-P(sol) polarization free energy of solvation -32.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds