Wall clock time and date at job start Tue Mar 31 2020 14:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46752 * 2 1 4 4 C 1.50700 * 109.47030 * 119.99986 * 2 1 3 5 5 H 1.08003 * 119.99290 * 120.00139 * 4 2 1 6 6 C 1.37876 * 120.00188 * 300.00439 * 4 2 1 7 7 N 1.31512 * 120.00031 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99901 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47247 * 59.99477 * 8 6 4 10 10 H 1.48503 * 109.46761 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46686 * 299.99740 * 8 6 4 12 12 N 1.46505 * 109.47488 * 240.00414 * 2 1 3 13 13 C 1.34776 * 119.99793 * 84.99443 * 12 2 1 14 14 O 1.21689 * 120.00391 * 0.02562 * 13 12 2 15 15 C 1.46644 * 119.99486 * 180.02562 * 13 12 2 16 16 C 1.36688 * 126.85601 * 180.02562 * 15 13 12 17 17 Br 1.89100 * 126.11861 * 359.93586 * 16 15 13 18 18 N 1.33235 * 107.76574 * 179.67110 * 16 15 13 19 19 C 1.31359 * 109.79560 * 0.22591 * 18 16 15 20 20 N 1.34263 * 109.01372 * 0.11691 * 19 18 16 21 21 C 1.46991 * 111.33699 * 179.80298 * 20 19 18 22 22 C 1.54397 * 105.48695 * 17.09580 * 21 20 19 23 23 C 1.51656 * 141.03773 * 180.23562 * 19 18 16 24 24 H 1.09001 * 109.47057 * 299.99971 * 1 2 3 25 25 H 1.09004 * 109.46733 * 59.99948 * 1 2 3 26 26 H 1.08997 * 109.46834 * 179.97438 * 1 2 3 27 27 H 0.96994 * 120.00294 * 179.97438 * 7 6 4 28 28 H 0.97000 * 119.99578 * 265.00550 * 12 2 1 29 29 H 1.09007 * 110.24456 * 136.09444 * 21 20 19 30 30 H 1.09002 * 110.24894 * 258.08722 * 21 20 19 31 31 H 1.08997 * 110.98381 * 92.44547 * 22 21 20 32 32 H 1.08996 * 110.98386 * 216.25361 * 22 21 20 33 33 H 1.09001 * 110.47973 * 282.04350 * 23 19 18 34 34 H 1.09002 * 110.47878 * 44.66247 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8301 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.8074 -1.1191 4.0077 10 1 1.8278 -0.4194 5.2204 11 1 1.8280 -2.5199 4.0080 12 7 2.0185 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8580 1.1627 -2.4117 15 6 2.6355 -0.7095 -3.5546 16 6 2.8192 -0.1682 -4.7962 17 35 2.4857 1.6264 -5.2903 18 7 3.2810 -1.1297 -5.5946 19 6 3.3933 -2.2517 -4.9208 20 7 2.9998 -2.0426 -3.6543 21 6 3.1008 -3.2709 -2.8531 22 6 4.0247 -4.2119 -3.6560 23 6 3.8197 -3.6962 -5.0983 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7088 1.1612 3.4844 28 1 2.2491 -1.6317 -1.1527 29 1 3.5399 -3.0514 -1.8799 30 1 2.1166 -3.7231 -2.7303 31 1 5.0631 -4.0984 -3.3447 32 1 3.7019 -5.2488 -3.5627 33 1 3.0372 -4.2659 -5.5997 34 1 4.7525 -3.7523 -5.6595 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362272956.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:46 Heat of formation + Delta-G solvation = 13.601187 kcal Electronic energy + Delta-G solvation = -20012.154783 eV Core-core repulsion = 16798.676219 eV Total energy + Delta-G solvation = -3213.478564 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.76920 -40.40975 -37.62916 -36.71098 -34.50333 -33.18837 -32.48841 -30.96968 -29.18552 -28.56128 -27.37757 -24.51159 -22.94175 -22.24770 -21.54852 -21.17518 -19.24601 -17.98756 -17.68971 -17.21467 -16.48728 -16.18747 -15.84400 -15.36273 -15.16894 -14.94879 -14.55727 -14.29235 -14.23487 -13.75465 -13.34304 -13.06498 -12.91685 -12.78194 -12.52160 -12.48619 -12.30724 -12.19224 -11.69658 -11.61127 -11.56991 -11.17269 -10.75207 -10.70285 -10.59848 -9.99382 -9.52240 -8.19823 -6.38725 -0.01051 0.27402 1.44409 1.46692 1.47096 1.52565 1.54907 2.13509 2.20221 2.45384 2.78208 3.10863 3.34846 3.61216 3.79585 3.96846 4.13302 4.35531 4.53538 4.68594 4.70793 4.85657 4.87336 5.01272 5.03124 5.10198 5.14201 5.34560 5.48976 5.59104 5.68612 5.81954 6.03088 6.51257 6.64664 6.77566 7.18991 7.36704 8.86476 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.014392 B = 0.004683 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.047018 B = 5978.050819 C = 7639.384156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.273 3.727 3 H 0.003 0.997 4 C -0.550 4.550 5 H 0.074 0.926 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.260 1.260 12 N -0.697 5.697 13 C 0.569 3.431 14 O -0.554 6.554 15 C -0.042 4.042 16 C 0.063 3.937 17 Br 0.033 6.967 18 N -0.496 5.496 19 C 0.226 3.774 20 N -0.455 5.455 21 C 0.070 3.930 22 C -0.108 4.108 23 C -0.037 4.037 24 H 0.070 0.930 25 H 0.011 0.989 26 H 0.040 0.960 27 H 0.267 0.733 28 H 0.397 0.603 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.148 0.852 33 H 0.128 0.872 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.317 -14.227 -14.327 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.170 3.830 3 H 0.021 0.979 4 C -0.588 4.588 5 H 0.092 0.908 6 C -0.184 4.184 7 N -0.553 5.553 8 Si 0.799 3.201 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.185 1.185 12 N -0.346 5.346 13 C 0.355 3.645 14 O -0.433 6.433 15 C -0.162 4.162 16 C -0.151 4.151 17 Br 0.116 6.884 18 N -0.216 5.216 19 C -0.039 4.039 20 N -0.139 5.139 21 C -0.049 4.049 22 C -0.146 4.146 23 C -0.076 4.076 24 H 0.089 0.911 25 H 0.030 0.970 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.233 0.767 29 H 0.117 0.883 30 H 0.136 0.864 31 H 0.118 0.882 32 H 0.166 0.834 33 H 0.146 0.854 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.013 -12.545 -14.904 20.388 hybrid contribution -0.109 -0.190 1.766 1.780 sum 5.904 -12.734 -13.137 19.225 Atomic orbital electron populations 1.21903 0.97999 0.99521 0.99777 1.18452 0.91288 0.92122 0.81142 0.97885 1.21426 1.33057 1.13776 0.90519 0.90774 1.25808 0.94719 0.95522 1.02329 1.70041 1.36668 1.23775 1.24841 0.85364 0.78598 0.78818 0.77368 1.19602 1.21286 1.18472 1.46231 1.65129 1.13786 1.09459 1.17193 0.78567 0.86364 0.82401 1.90841 1.51967 1.15779 1.84709 1.20522 1.14618 0.84504 0.96565 1.22227 1.07428 0.94858 0.90605 1.96673 1.94397 1.04952 1.92331 1.69634 1.21306 0.97886 1.32772 1.25734 0.98569 0.98151 0.81450 1.46861 1.45601 1.07091 1.14310 1.23276 1.04864 0.80305 0.96415 1.22896 1.00534 1.00590 0.90540 1.21211 1.05451 0.81149 0.99783 0.91088 0.96972 0.94060 0.92416 0.76730 0.88261 0.86421 0.88151 0.83381 0.85367 0.85818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.75 9.26 71.98 0.67 -6.09 16 2 C 0.27 14.14 2.56 44.24 0.11 14.25 16 3 H 0.00 0.20 7.58 -2.38 -0.02 0.18 16 4 C -0.55 -28.34 8.73 25.60 0.22 -28.12 16 5 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.92 -51.68 11.32 21.45 0.24 -51.44 16 8 Si 0.97 40.47 29.54 68.60 2.03 42.50 16 9 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 10 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 12 N -0.70 -29.87 5.07 -450.10 -2.28 -32.15 16 13 C 0.57 25.20 7.75 86.44 0.67 25.87 16 14 O -0.55 -28.47 14.97 -4.31 -0.06 -28.53 16 15 C -0.04 -1.56 7.08 39.91 0.28 -1.27 16 16 C 0.06 2.34 7.62 84.12 0.64 2.98 16 17 Br 0.03 1.21 32.40 -20.37 -0.66 0.55 16 18 N -0.50 -16.22 11.21 -181.42 -2.03 -18.25 16 19 C 0.23 5.48 8.56 138.43 1.19 6.66 16 20 N -0.46 -12.02 3.59 -496.38 -1.78 -13.80 16 21 C 0.07 1.04 6.60 86.76 0.57 1.62 16 22 C -0.11 -0.59 7.18 31.59 0.23 -0.36 16 23 C -0.04 -0.35 6.86 30.68 0.21 -0.14 16 24 H 0.07 3.91 6.07 -2.39 -0.01 3.90 16 25 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 26 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 28 H 0.40 14.13 6.30 -92.71 -0.58 13.55 16 29 H 0.10 1.55 7.34 -2.38 -0.02 1.54 16 30 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.15 -0.26 8.14 -2.39 -0.02 -0.28 16 33 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -75.04 307.25 1.25 -73.79 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.56 Total: 10.60 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 5.24 Total: 16.73 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -5.85 Total: -115.63 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.06 Total: -28.53 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Atomic # 35 Polarization: 1.21 SS G_CDS: -0.66 Total: 0.55 kcal Total: -75.04 1.25 -73.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362272956.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.389 kcal (2) G-P(sol) polarization free energy of solvation -75.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds