Wall clock time and date at job start Tue Mar 31 2020 15:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39933 * 120.45657 * 279.83518 * 3 2 1 5 5 N 1.31310 * 120.74015 * 179.76461 * 4 3 2 6 6 C 1.32825 * 121.81544 * 0.52798 * 5 4 3 7 7 C 1.48083 * 119.57692 * 179.74831 * 6 5 4 8 8 O 1.21534 * 119.99676 * 179.72266 * 7 6 5 9 9 N 1.34771 * 120.00258 * 359.72831 * 7 6 5 10 10 C 1.39830 * 120.00194 * 184.03562 * 9 7 6 11 11 C 1.39322 * 119.95143 * 144.52651 * 10 9 7 12 12 C 1.38476 * 120.42251 * 179.72317 * 11 10 9 13 13 C 1.37687 * 120.32967 * 0.55264 * 12 11 10 14 14 C 1.40751 * 119.88835 * 359.72034 * 13 12 11 15 15 C 1.41412 * 120.20699 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99661 * 214.73449 * 15 14 13 17 17 C 1.39931 * 119.99837 * 34.73798 * 15 14 13 18 18 N 1.30827 * 120.00130 * 355.55305 * 17 15 14 19 19 Si 1.86798 * 119.99742 * 175.55574 * 17 15 14 20 20 H 1.48499 * 109.47210 * 89.99924 * 19 17 15 21 21 H 1.48499 * 109.47154 * 210.00105 * 19 17 15 22 22 H 1.48502 * 109.47278 * 330.00031 * 19 17 15 23 23 C 1.38276 * 119.95133 * 324.79870 * 10 9 7 24 24 C 1.39498 * 120.83994 * 359.47023 * 6 5 4 25 25 Cl 1.73598 * 120.41115 * 180.27913 * 24 6 5 26 26 C 1.38557 * 119.17239 * 0.25836 * 24 6 5 27 27 H 1.08003 * 119.62644 * 0.02562 * 4 3 2 28 28 H 0.96998 * 120.00089 * 4.31186 * 9 7 6 29 29 H 1.07993 * 119.78454 * 359.97438 * 11 10 9 30 30 H 1.07999 * 119.83903 * 180.27792 * 12 11 10 31 31 H 1.08002 * 120.05819 * 179.74754 * 13 12 11 32 32 H 0.96999 * 120.00120 * 179.97438 * 18 17 15 33 33 H 1.07996 * 120.16042 * 359.97438 * 23 10 9 34 34 H 1.07993 * 120.82815 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2775 -0.2051 1.1885 5 7 4.5905 -0.2102 1.1941 6 6 5.2963 -0.0122 0.0864 7 6 6.7757 -0.0226 0.1507 8 8 7.4290 0.1527 -0.8590 9 7 7.3976 -0.2267 1.3288 10 6 8.7919 -0.1528 1.4053 11 6 9.3993 0.3667 2.5465 12 6 10.7793 0.4391 2.6351 13 6 11.5666 0.0086 1.5908 14 6 10.9671 -0.5134 0.4292 15 6 11.7692 -0.9581 -0.6471 16 1 11.4287 -0.8284 -1.6639 17 6 13.0040 -1.5661 -0.3949 18 7 13.4562 -1.6451 0.8302 19 14 14.0068 -2.2649 -1.8075 20 1 14.9127 -1.2149 -2.3384 21 1 14.8120 -3.4142 -1.3219 22 1 13.0927 -2.7213 -2.8853 23 6 9.5656 -0.5903 0.3461 24 6 4.6616 0.1997 -1.1376 25 17 5.5950 0.4502 -2.5797 26 6 3.2770 0.2074 -1.1880 27 1 2.7389 -0.3656 2.1108 28 1 6.8784 -0.4287 2.1228 29 1 8.7900 0.7114 3.3688 30 1 11.2404 0.8394 3.5259 31 1 12.6424 0.0709 1.6629 32 1 14.3119 -2.0669 1.0051 33 1 9.0957 -0.9895 -0.5406 34 1 2.7581 0.3694 -2.1211 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433484191.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:12 Heat of formation + Delta-G solvation = 45.481618 kcal Electronic energy + Delta-G solvation = -23128.211726 eV Core-core repulsion = 19437.852207 eV Total energy + Delta-G solvation = -3690.359519 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.052 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.09252 -40.74500 -38.91736 -37.89152 -37.66784 -36.17965 -34.86154 -33.99152 -32.74749 -31.68664 -30.02912 -27.23631 -26.87071 -25.02316 -23.56198 -22.70721 -21.59641 -20.50282 -19.68350 -19.07871 -18.26590 -17.30203 -16.84615 -16.62214 -16.46817 -16.35154 -16.11283 -15.54338 -15.05326 -14.85342 -14.66479 -14.54155 -14.33533 -14.27171 -13.92507 -13.69071 -13.52450 -13.16909 -13.00202 -12.85528 -12.79526 -12.52491 -12.12913 -11.88399 -11.50098 -11.30511 -11.17057 -11.08675 -10.76542 -10.43535 -10.27690 -9.27561 -8.71519 -8.44094 -6.36877 -1.17638 -0.27254 0.81380 0.86213 1.02513 1.35939 1.39032 1.45923 1.48986 1.55369 1.90826 2.05160 2.25642 2.44022 2.57737 2.83694 2.88241 3.32585 3.44278 3.62994 3.73789 3.92975 4.32841 4.52388 4.58120 4.65652 4.96990 5.06559 5.16309 5.18842 5.23198 5.40567 5.77654 5.87928 6.11010 6.14647 6.19996 6.29977 6.38592 6.60636 6.75392 7.00085 7.05182 7.19901 8.45505 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.020044 B = 0.002938 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.571872 B = 9527.847248 C =10579.056994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.285 3.715 3 C -0.032 4.032 4 C 0.170 3.830 5 N -0.448 5.448 6 C 0.113 3.887 7 C 0.544 3.456 8 O -0.518 6.518 9 N -0.635 5.635 10 C 0.146 3.854 11 C -0.232 4.232 12 C -0.099 4.099 13 C -0.183 4.183 14 C 0.080 3.920 15 C -0.501 4.501 16 H 0.062 0.938 17 C 0.030 3.970 18 N -0.839 5.839 19 Si 0.983 3.017 20 H -0.261 1.261 21 H -0.265 1.265 22 H -0.266 1.266 23 C -0.217 4.217 24 C -0.053 4.053 25 Cl -0.018 7.018 26 C -0.007 4.007 27 H 0.221 0.779 28 H 0.425 0.575 29 H 0.133 0.867 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.284 0.716 33 H 0.097 0.903 34 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.421 2.284 0.782 19.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.031 4.031 3 C -0.038 4.038 4 C 0.007 3.993 5 N -0.159 5.159 6 C -0.025 4.025 7 C 0.330 3.670 8 O -0.392 6.392 9 N -0.281 5.281 10 C 0.053 3.947 11 C -0.253 4.253 12 C -0.118 4.118 13 C -0.203 4.203 14 C 0.078 3.922 15 C -0.532 4.532 16 H 0.081 0.919 17 C -0.181 4.181 18 N -0.467 5.467 19 Si 0.805 3.195 20 H -0.186 1.186 21 H -0.190 1.190 22 H -0.190 1.190 23 C -0.238 4.238 24 C -0.083 4.083 25 Cl 0.011 6.989 26 C -0.035 4.035 27 H 0.237 0.763 28 H 0.264 0.736 29 H 0.151 0.849 30 H 0.141 0.859 31 H 0.129 0.871 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -19.966 2.219 0.824 20.106 hybrid contribution 0.630 -0.315 -1.189 1.382 sum -19.336 1.904 -0.365 19.433 Atomic orbital electron populations 1.81388 1.12608 1.08671 1.07447 1.24888 0.91470 0.93280 0.93508 1.16936 0.85447 1.05940 0.95444 1.23716 0.87876 0.89337 0.98363 1.67853 1.09239 1.12000 1.26761 1.20919 0.93512 0.98501 0.89548 1.18303 0.86763 0.78089 0.83867 1.90948 1.66009 1.47699 1.34577 1.43077 1.05135 1.67944 1.11941 1.17491 0.81448 0.99610 0.96111 1.20570 0.94641 1.11040 0.99028 1.20892 0.93432 0.99432 0.98010 1.21600 0.99945 1.03193 0.95611 1.17881 0.91368 0.89086 0.93895 1.19669 1.02785 1.36803 0.93911 0.91925 1.26648 0.97609 0.94652 0.99234 1.69819 1.19270 1.35932 1.21724 0.85183 0.77884 0.78498 0.77966 1.18605 1.18968 1.19023 1.21227 0.93551 1.09341 0.99718 1.21849 0.93397 1.03340 0.89736 1.98480 1.72522 1.94088 1.33811 1.21842 0.89961 0.91536 1.00195 0.76307 0.73614 0.84918 0.85876 0.87051 0.90548 0.88470 0.79227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.11 18.54 19.01 0.35 -6.76 16 2 C 0.28 3.19 15.36 88.33 1.36 4.55 16 3 C -0.03 -0.30 5.75 -21.22 -0.12 -0.42 16 4 C 0.17 1.60 10.91 85.18 0.93 2.53 16 5 N -0.45 -7.70 9.52 -183.82 -1.75 -9.45 16 6 C 0.11 2.66 6.75 41.91 0.28 2.94 16 7 C 0.54 18.28 7.64 86.86 0.66 18.94 16 8 O -0.52 -21.42 11.36 -3.82 -0.04 -21.46 16 9 N -0.64 -21.42 5.32 -306.04 -1.63 -23.04 16 10 C 0.15 6.32 6.29 38.14 0.24 6.56 16 11 C -0.23 -9.39 9.97 22.59 0.23 -9.16 16 12 C -0.10 -4.40 10.01 22.20 0.22 -4.18 16 13 C -0.18 -9.74 8.67 22.75 0.20 -9.54 16 14 C 0.08 4.52 5.55 -21.31 -0.12 4.40 16 15 C -0.50 -28.70 9.04 23.46 0.21 -28.49 16 16 H 0.06 3.59 7.85 -2.91 -0.02 3.57 16 17 C 0.03 1.60 5.42 85.25 0.46 2.07 16 18 N -0.84 -45.05 10.60 21.82 0.23 -44.82 16 19 Si 0.98 40.56 29.56 68.60 2.03 42.59 16 20 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 21 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 23 C -0.22 -11.25 8.43 22.86 0.19 -11.06 16 24 C -0.05 -1.05 6.36 22.65 0.14 -0.91 16 25 Cl -0.02 -0.47 26.00 -2.72 -0.07 -0.54 16 26 C -0.01 -0.08 9.70 22.74 0.22 0.14 16 27 H 0.22 0.34 8.06 -2.91 -0.02 0.31 16 28 H 0.42 11.26 8.15 -92.71 -0.76 10.51 16 29 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 30 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 31 H 0.11 6.22 6.13 -2.91 -0.02 6.21 16 32 H 0.28 13.81 8.30 -92.71 -0.77 13.04 16 33 H 0.10 5.26 6.24 -2.91 -0.02 5.24 16 34 H 0.19 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -70.35 326.96 4.67 -65.67 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.44 Total: 19.43 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: 5.11 Total: -21.62 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -2.79 Total: -84.07 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.04 Total: -21.46 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.07 Total: -0.54 kcal Total: -70.35 4.67 -65.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433484191.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.154 kcal (2) G-P(sol) polarization free energy of solvation -70.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds