Wall clock time and date at job start Tue Mar 31 2020 14:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00298 * 2 1 4 4 C 1.50709 * 109.47071 * 269.99987 * 3 2 1 5 5 H 1.07999 * 119.99766 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99844 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00175 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99682 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.47190 * 90.00063 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99620 * 8 6 4 11 11 H 1.48498 * 109.47200 * 330.00104 * 8 6 4 12 12 C 1.34775 * 120.00108 * 179.97438 * 2 1 3 13 13 O 1.21697 * 120.00537 * 185.47695 * 12 2 1 14 14 C 1.46649 * 119.99830 * 5.47159 * 12 2 1 15 15 C 1.36693 * 126.85426 * 93.63565 * 14 12 2 16 16 Br 1.89096 * 126.11823 * 359.94708 * 15 14 12 17 17 N 1.33228 * 107.76417 * 179.97438 * 15 14 12 18 18 C 1.31366 * 109.79713 * 359.95745 * 17 15 14 19 19 N 1.34269 * 109.01151 * 0.12415 * 18 17 15 20 20 C 1.46995 * 111.33283 * 179.77281 * 19 18 17 21 21 C 1.54398 * 105.48406 * 17.11013 * 20 19 18 22 22 C 1.51657 * 141.03577 * 180.23537 * 18 17 15 23 23 H 1.08996 * 109.47080 * 273.45516 * 1 2 3 24 24 H 1.09005 * 109.47049 * 33.45495 * 1 2 3 25 25 H 1.08999 * 109.46850 * 153.45547 * 1 2 3 26 26 H 1.09005 * 109.47132 * 29.99650 * 3 2 1 27 27 H 1.09001 * 109.47511 * 149.99810 * 3 2 1 28 28 H 0.97000 * 119.99897 * 179.97438 * 7 6 4 29 29 H 1.09001 * 110.24160 * 136.11625 * 20 19 18 30 30 H 1.09000 * 110.24447 * 258.10432 * 20 19 18 31 31 H 1.09000 * 110.97745 * 92.44451 * 21 20 19 32 32 H 1.08997 * 110.98447 * 216.24450 * 21 20 19 33 33 H 1.08996 * 110.48347 * 282.06304 * 22 18 17 34 34 H 1.08993 * 110.47550 * 44.68933 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5526 3.6185 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.3079 4.2590 -3.9015 10 1 4.6980 4.2002 -3.4961 11 1 3.5562 2.2193 -4.3044 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1696 0.1011 14 6 1.4106 -2.4343 -0.1200 15 6 1.1535 -3.1260 -1.2707 16 35 1.6754 -2.6190 -3.0161 17 7 0.4690 -4.2208 -0.9426 18 6 0.2819 -4.2557 0.3572 19 7 0.8453 -3.1692 0.9095 20 6 0.6607 -3.1540 2.3678 21 6 0.2738 -4.5991 2.7495 22 6 -0.3547 -5.1128 1.4344 23 1 -0.3633 0.0619 1.0258 24 1 -0.3633 0.8574 -0.5666 25 1 -0.3633 -0.9193 -0.4593 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5139 28 1 4.0294 4.4444 -0.8505 29 1 1.5892 -2.8688 2.8625 30 1 -0.1391 -2.4651 2.6395 31 1 1.1558 -5.1822 3.0144 32 1 -0.4553 -4.6070 3.5596 33 1 -1.4351 -4.9697 1.4467 34 1 -0.1099 -6.1635 1.2797 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442359486.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:50 Heat of formation + Delta-G solvation = 44.881130 kcal Electronic energy + Delta-G solvation = -20180.363322 eV Core-core repulsion = 16968.241158 eV Total energy + Delta-G solvation = -3212.122164 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.61765 -38.80435 -36.62195 -34.93588 -32.70022 -32.04218 -31.23746 -28.68892 -27.92697 -27.38283 -25.81789 -23.51086 -22.18469 -21.40271 -20.39519 -18.84723 -17.27080 -16.58612 -16.48354 -15.76039 -15.25707 -14.56646 -14.34063 -14.20130 -13.91563 -13.86980 -13.60373 -12.83530 -12.59690 -12.37812 -12.17718 -11.98383 -11.92288 -11.71311 -11.25902 -10.92708 -10.68178 -10.62393 -10.44744 -10.18255 -9.95304 -9.67965 -9.57120 -9.29083 -8.45626 -8.24133 -7.80147 -6.06474 -4.10801 1.56736 1.62953 2.36956 2.75697 3.20790 3.31187 3.37929 3.44121 3.59330 3.81549 4.12410 4.34863 4.43807 4.46391 4.83487 5.01894 5.07883 5.20637 5.28546 5.30877 5.38304 5.53958 5.59650 5.78014 6.02325 6.14409 6.22289 6.72308 6.93043 7.31534 7.41681 7.76527 7.90190 8.17502 8.19509 8.73031 8.96025 9.54419 11.01980 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.016459 B = 0.005424 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.836831 B = 5160.634179 C = 6444.536705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.581 5.581 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.578 3.422 13 O -0.517 6.517 14 C 0.016 3.984 15 C 0.043 3.957 16 Br 0.034 6.966 17 N -0.457 5.457 18 C 0.198 3.802 19 N -0.454 5.454 20 C 0.097 3.903 21 C -0.128 4.128 22 C -0.037 4.037 23 H 0.043 0.957 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.047 0.953 28 H 0.264 0.736 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.860 -16.098 6.156 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.313 5.313 3 C 0.126 3.874 4 C -0.565 4.565 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.360 3.640 13 O -0.392 6.392 14 C -0.105 4.105 15 C -0.167 4.167 16 Br 0.117 6.883 17 N -0.177 5.177 18 C -0.066 4.066 19 N -0.138 5.138 20 C -0.024 4.024 21 C -0.166 4.166 22 C -0.076 4.076 23 H 0.062 0.938 24 H 0.099 0.901 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.101 -16.094 5.230 19.708 hybrid contribution 0.305 0.923 -0.177 0.988 sum -9.796 -15.172 5.053 18.753 Atomic orbital electron populations 1.21643 0.81108 1.02809 1.00466 1.48130 1.06407 1.07239 1.69500 1.19424 0.92583 0.77273 0.98095 1.21431 1.36647 1.06379 0.92082 0.91947 1.24908 0.95223 0.96301 0.97469 1.69929 1.38404 1.14332 1.30773 0.86510 0.77703 0.78715 0.84670 1.20568 1.21061 1.19687 1.16781 0.86578 0.81670 0.78944 1.90837 1.12857 1.86425 1.49077 1.20921 1.05293 0.97933 0.86362 1.21982 1.06799 0.95786 0.92157 1.96767 1.89772 1.89803 1.11981 1.69552 1.17868 1.19964 1.10330 1.24308 1.00789 0.91404 0.90072 1.46425 1.40090 1.19234 1.08083 1.22571 1.04098 0.99646 0.76057 1.22769 1.02647 0.93546 0.97609 1.20719 1.00205 0.98979 0.87728 0.93809 0.90141 0.92552 0.94523 0.93497 0.92687 0.88507 0.88501 0.89114 0.87606 0.88143 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.43 10.37 59.84 0.62 2.05 16 2 N -0.58 -12.71 2.86 -184.52 -0.53 -13.24 16 3 C 0.24 6.36 5.22 -5.19 -0.03 6.33 16 4 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 7 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 8 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.58 12.93 7.31 -12.87 -0.09 12.83 16 13 O -0.52 -13.65 16.66 5.19 0.09 -13.56 16 14 C 0.02 0.30 4.97 -81.99 -0.41 -0.11 16 15 C 0.04 0.82 7.58 -17.50 -0.13 0.69 16 16 Br 0.03 0.63 33.85 -68.01 -2.30 -1.67 16 17 N -0.46 -7.85 11.21 -8.69 -0.10 -7.95 16 18 C 0.20 2.69 8.56 -154.92 -1.33 1.37 16 19 N -0.45 -6.57 3.65 -108.24 -0.39 -6.96 16 20 C 0.10 0.89 7.78 -3.04 -0.02 0.86 16 21 C -0.13 -0.68 7.18 -25.19 -0.18 -0.86 16 22 C -0.04 -0.27 6.86 -26.60 -0.18 -0.45 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 25 H 0.06 0.92 6.63 -51.93 -0.34 0.58 16 26 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 27 H 0.05 1.36 7.35 -51.93 -0.38 0.98 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 316.32 15.07 4.77 4.77 Total: -1.00 -35.57 316.32 -9.00 -44.56 By element: Atomic # 1 Polarization: -2.42 SS G_CDS: -4.07 Total: -6.49 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: -2.17 Total: 9.23 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.28 Total: -53.79 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.56 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 35 Polarization: 0.63 SS G_CDS: -2.30 Total: -1.67 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.57 -9.00 -44.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442359486.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.445 kcal (2) G-P(sol) polarization free energy of solvation -35.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds