Wall clock time and date at job start Tue Mar 31 2020 14:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00298 * 2 1 4 4 C 1.50709 * 109.47071 * 269.99987 * 3 2 1 5 5 H 1.07999 * 119.99766 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99844 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00175 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99682 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.47190 * 90.00063 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99620 * 8 6 4 11 11 H 1.48498 * 109.47200 * 330.00104 * 8 6 4 12 12 C 1.34775 * 120.00108 * 179.97438 * 2 1 3 13 13 O 1.21697 * 120.00537 * 185.47695 * 12 2 1 14 14 C 1.46649 * 119.99830 * 5.47159 * 12 2 1 15 15 C 1.36693 * 126.85426 * 93.63565 * 14 12 2 16 16 Br 1.89096 * 126.11823 * 359.94708 * 15 14 12 17 17 N 1.33228 * 107.76417 * 179.97438 * 15 14 12 18 18 C 1.31366 * 109.79713 * 359.95745 * 17 15 14 19 19 N 1.34269 * 109.01151 * 0.12415 * 18 17 15 20 20 C 1.46995 * 111.33283 * 179.77281 * 19 18 17 21 21 C 1.54398 * 105.48406 * 17.11013 * 20 19 18 22 22 C 1.51657 * 141.03577 * 180.23537 * 18 17 15 23 23 H 1.08996 * 109.47080 * 273.45516 * 1 2 3 24 24 H 1.09005 * 109.47049 * 33.45495 * 1 2 3 25 25 H 1.08999 * 109.46850 * 153.45547 * 1 2 3 26 26 H 1.09005 * 109.47132 * 29.99650 * 3 2 1 27 27 H 1.09001 * 109.47511 * 149.99810 * 3 2 1 28 28 H 0.97000 * 119.99897 * 179.97438 * 7 6 4 29 29 H 1.09001 * 110.24160 * 136.11625 * 20 19 18 30 30 H 1.09000 * 110.24447 * 258.10432 * 20 19 18 31 31 H 1.09000 * 110.97745 * 92.44451 * 21 20 19 32 32 H 1.08997 * 110.98447 * 216.24450 * 21 20 19 33 33 H 1.08996 * 110.48347 * 282.06304 * 22 18 17 34 34 H 1.08993 * 110.47550 * 44.68933 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5526 3.6185 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.3079 4.2590 -3.9015 10 1 4.6980 4.2002 -3.4961 11 1 3.5562 2.2193 -4.3044 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1696 0.1011 14 6 1.4106 -2.4343 -0.1200 15 6 1.1535 -3.1260 -1.2707 16 35 1.6754 -2.6190 -3.0161 17 7 0.4690 -4.2208 -0.9426 18 6 0.2819 -4.2557 0.3572 19 7 0.8453 -3.1692 0.9095 20 6 0.6607 -3.1540 2.3678 21 6 0.2738 -4.5991 2.7495 22 6 -0.3547 -5.1128 1.4344 23 1 -0.3633 0.0619 1.0258 24 1 -0.3633 0.8574 -0.5666 25 1 -0.3633 -0.9193 -0.4593 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5139 28 1 4.0294 4.4444 -0.8505 29 1 1.5892 -2.8688 2.8625 30 1 -0.1391 -2.4651 2.6395 31 1 1.1558 -5.1822 3.0144 32 1 -0.4553 -4.6070 3.5596 33 1 -1.4351 -4.9697 1.4467 34 1 -0.1099 -6.1635 1.2797 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442359486.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:49 Heat of formation + Delta-G solvation = 20.877675 kcal Electronic energy + Delta-G solvation = -20181.404190 eV Core-core repulsion = 16968.241158 eV Total energy + Delta-G solvation = -3213.163031 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.76505 -40.54680 -37.51282 -36.78970 -34.78410 -33.14400 -32.58470 -30.32957 -29.12937 -28.55666 -27.44689 -25.37333 -22.96435 -22.91848 -21.44132 -20.27932 -18.71404 -18.58448 -17.71958 -17.32598 -16.69714 -16.38608 -15.86773 -15.30578 -15.07960 -15.02976 -14.41172 -14.24227 -14.15688 -13.95058 -13.58284 -13.35616 -13.23084 -12.90474 -12.59871 -12.53604 -12.51985 -12.25743 -11.81356 -11.70679 -11.64203 -11.45023 -11.00963 -10.73632 -10.64493 -9.65268 -9.53836 -8.24921 -6.37806 0.22772 0.35040 1.06145 1.35994 1.38615 1.48739 1.56198 1.69273 2.22025 2.38998 2.80615 3.06092 3.29580 3.54049 3.78120 3.91422 4.13016 4.17776 4.35680 4.46590 4.54814 4.72357 4.75253 4.86558 4.90702 5.03377 5.11703 5.14041 5.15649 5.44675 5.70963 5.73775 6.01152 6.41722 6.58328 6.68843 7.02637 7.32803 8.83011 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.016459 B = 0.005424 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.836831 B = 5160.634179 C = 6444.536705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.584 5.584 3 C 0.260 3.740 4 C -0.542 4.542 5 H 0.054 0.946 6 C 0.015 3.985 7 N -0.925 5.925 8 Si 0.959 3.041 9 H -0.262 1.262 10 H -0.279 1.279 11 H -0.275 1.275 12 C 0.582 3.418 13 O -0.573 6.573 14 C -0.013 4.013 15 C 0.035 3.965 16 Br 0.018 6.982 17 N -0.490 5.490 18 C 0.218 3.782 19 N -0.454 5.454 20 C 0.079 3.921 21 C -0.108 4.108 22 C -0.035 4.035 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.036 0.964 27 H 0.006 0.994 28 H 0.268 0.732 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.150 0.850 33 H 0.131 0.869 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.185 -17.616 7.299 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.314 5.314 3 C 0.140 3.860 4 C -0.581 4.581 5 H 0.072 0.928 6 C -0.184 4.184 7 N -0.564 5.564 8 Si 0.784 3.216 9 H -0.187 1.187 10 H -0.204 1.204 11 H -0.200 1.200 12 C 0.366 3.634 13 O -0.452 6.452 14 C -0.135 4.135 15 C -0.176 4.176 16 Br 0.101 6.899 17 N -0.210 5.210 18 C -0.047 4.047 19 N -0.138 5.138 20 C -0.040 4.040 21 C -0.145 4.145 22 C -0.073 4.073 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.084 0.916 26 H 0.054 0.946 27 H 0.025 0.975 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.137 0.863 31 H 0.114 0.886 32 H 0.168 0.832 33 H 0.149 0.851 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.482 -17.619 6.406 22.522 hybrid contribution 0.971 1.319 -0.412 1.689 sum -11.512 -16.300 5.994 20.836 Atomic orbital electron populations 1.21837 0.78002 1.03222 1.02723 1.48088 1.08288 1.05977 1.69045 1.18939 0.91336 0.79079 0.96688 1.21642 1.37053 1.06609 0.92754 0.92759 1.25728 0.94785 0.96307 1.01594 1.70026 1.38851 1.14771 1.32795 0.85532 0.78242 0.78259 0.79578 1.18680 1.20428 1.20045 1.17149 0.86048 0.82804 0.77374 1.90787 1.15399 1.87467 1.51515 1.20200 1.07728 0.97410 0.88187 1.22005 1.07343 0.96588 0.91658 1.96717 1.90019 1.90063 1.13092 1.69550 1.19153 1.19632 1.12622 1.25665 0.98167 0.91206 0.89685 1.46778 1.38944 1.18446 1.09586 1.23160 1.04633 1.03258 0.72956 1.22889 1.03884 0.90119 0.97656 1.21173 1.01545 0.98815 0.85808 0.90424 0.90259 0.91613 0.94584 0.97546 0.92304 0.89430 0.86289 0.88595 0.83199 0.85105 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.82 10.37 127.77 1.33 4.14 16 2 N -0.58 -26.12 2.86 -855.91 -2.44 -28.56 16 3 C 0.26 14.03 5.22 85.64 0.45 14.48 16 4 C -0.54 -31.42 9.39 25.60 0.24 -31.18 16 5 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 6 C 0.02 0.89 5.46 84.65 0.46 1.35 16 7 N -0.92 -55.43 13.29 21.45 0.28 -55.15 16 8 Si 0.96 45.43 29.54 68.60 2.03 47.45 16 9 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 12 C 0.58 26.88 7.31 86.44 0.63 27.51 16 13 O -0.57 -31.92 16.66 -4.34 -0.07 -31.99 16 14 C -0.01 -0.51 4.97 39.92 0.20 -0.31 16 15 C 0.04 1.34 7.58 84.12 0.64 1.98 16 16 Br 0.02 0.69 33.85 -20.37 -0.69 0.00 16 17 N -0.49 -16.27 11.21 -181.42 -2.03 -18.30 16 18 C 0.22 5.34 8.56 138.42 1.19 6.53 16 19 N -0.45 -12.35 3.65 -496.36 -1.81 -14.16 16 20 C 0.08 1.20 7.78 86.76 0.68 1.87 16 21 C -0.11 -0.59 7.18 31.59 0.23 -0.36 16 22 C -0.03 -0.33 6.86 30.68 0.21 -0.12 16 23 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.08 2.66 8.10 -2.38 -0.02 2.64 16 25 H 0.07 2.09 6.63 -2.39 -0.02 2.07 16 26 H 0.04 1.92 8.07 -2.38 -0.02 1.91 16 27 H 0.01 0.40 7.35 -2.39 -0.02 0.38 16 28 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.15 -0.36 8.14 -2.39 -0.02 -0.38 16 33 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -82.21 316.32 2.62 -79.59 By element: Atomic # 1 Polarization: -5.89 SS G_CDS: 1.12 Total: -4.77 kcal Atomic # 6 Polarization: 19.65 SS G_CDS: 6.24 Total: 25.89 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -6.00 Total: -116.18 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -0.07 Total: -31.99 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 35 Polarization: 0.69 SS G_CDS: -0.69 Total: 0.00 kcal Total: -82.21 2.62 -79.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442359486.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.471 kcal (2) G-P(sol) polarization free energy of solvation -82.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds