Wall clock time and date at job start Tue Mar 31 2020 14:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29156 * 124.79099 * 2 1 4 4 C 1.31358 * 117.32181 * 179.97438 * 3 2 1 5 5 C 1.50706 * 122.91742 * 179.97438 * 4 3 2 6 6 C 1.35397 * 114.16307 * 0.23211 * 4 3 2 7 7 C 1.47109 * 126.12058 * 179.77154 * 6 4 3 8 8 N 1.31289 * 126.32549 * 359.68475 * 7 6 4 9 9 N 1.28645 * 109.39378 * 179.82754 * 8 7 6 10 10 C 1.31221 * 109.48877 * 0.44517 * 9 8 7 11 11 S 1.76199 * 126.26566 * 179.69382 * 10 9 8 12 12 C 1.81001 * 99.99972 * 0.04486 * 11 10 9 13 13 C 1.53000 * 109.47078 * 180.02562 * 12 11 10 14 14 H 1.08997 * 109.46971 * 59.99925 * 13 12 11 15 15 O 1.42902 * 109.47001 * 299.99813 * 13 12 11 16 16 C 1.50704 * 109.47061 * 180.02562 * 13 12 11 17 17 H 1.08000 * 120.00132 * 359.97438 * 16 13 12 18 18 C 1.37874 * 119.99851 * 180.02562 * 16 13 12 19 19 N 1.31518 * 120.00177 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99788 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47208 * 89.99713 * 20 18 16 22 22 H 1.48501 * 109.46880 * 209.99663 * 20 18 16 23 23 H 1.48496 * 109.47192 * 329.99987 * 20 18 16 24 24 O 1.34754 * 107.47027 * 359.73217 * 10 9 8 25 25 S 1.70948 * 124.79071 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.46880 * 90.00058 * 1 2 3 27 27 H 1.09000 * 109.47488 * 210.00141 * 1 2 3 28 28 H 1.09004 * 109.47210 * 330.00481 * 1 2 3 29 29 H 1.09001 * 109.46953 * 90.02603 * 5 4 3 30 30 H 1.09000 * 109.47318 * 210.02200 * 5 4 3 31 31 H 1.09000 * 109.47161 * 330.02831 * 5 4 3 32 32 H 1.09008 * 109.47205 * 300.00023 * 12 11 10 33 33 H 1.09000 * 109.47013 * 59.99888 * 12 11 10 34 34 H 0.96700 * 113.99927 * 300.00041 * 15 13 12 35 35 H 0.96995 * 119.99848 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2439 1.0607 0.0000 4 6 3.5464 0.8899 0.0005 5 6 4.5228 2.0378 0.0000 6 6 3.9353 -0.4070 -0.0040 7 6 5.3226 -0.8962 -0.0093 8 7 6.4078 -0.1574 -0.0164 9 7 7.4439 -0.9200 -0.0157 10 6 7.0631 -2.1758 -0.0178 11 16 8.1202 -3.5854 -0.0255 12 6 9.7349 -2.7674 -0.0276 13 6 10.8417 -3.8237 -0.0349 14 1 10.7469 -4.4430 -0.9268 15 8 10.7248 -4.6441 1.1294 16 6 12.1860 -3.1427 -0.0360 17 1 12.2451 -2.0643 -0.0323 18 6 13.3406 -3.8963 -0.0428 19 7 13.2687 -5.2095 -0.0478 20 14 15.0069 -3.0521 -0.0449 21 1 15.4531 -2.8338 1.3546 22 1 15.9941 -3.9073 -0.7515 23 1 14.8983 -1.7440 -0.7394 24 8 5.7157 -2.1899 -0.0139 25 16 2.4824 -1.4039 0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8901 0.5138 29 1 4.7583 2.3150 1.0276 30 1 5.4362 1.7377 -0.5137 31 1 4.0803 2.8911 -0.5141 32 1 9.8242 -2.1419 -0.9159 33 1 9.8294 -2.1477 0.8641 34 1 10.7996 -4.1582 1.9620 35 1 14.0809 -5.7396 -0.0529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001472973794.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:05 Heat of formation + Delta-G solvation = 32.845596 kcal Electronic energy + Delta-G solvation = -21655.269547 eV Core-core repulsion = 18101.849747 eV Total energy + Delta-G solvation = -3553.419800 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.98014 -40.36687 -36.25073 -36.04005 -34.13281 -32.30042 -31.49245 -29.96618 -29.50617 -28.15498 -25.52022 -24.05683 -23.61731 -23.19093 -21.24294 -20.11300 -18.32148 -18.04911 -17.45715 -17.32287 -16.47534 -15.89930 -15.61413 -14.75391 -14.53731 -14.43683 -14.34447 -14.01813 -13.79057 -13.70545 -12.98475 -12.71781 -12.65634 -12.49568 -12.43069 -11.96621 -11.85842 -11.64584 -11.42688 -11.26890 -11.03856 -10.97785 -10.92837 -10.39227 -10.18579 -10.09004 -9.63012 -9.36201 -9.01787 -8.74645 -8.48440 -7.54936 -6.17341 -4.37760 -0.26148 0.66629 0.76310 1.16543 1.21090 2.14412 2.35448 2.54944 2.62445 3.21398 3.28857 3.32246 3.57418 4.10384 4.28437 4.44862 4.70141 4.87644 4.93803 4.95769 5.09984 5.13829 5.23285 5.32021 5.46995 5.51948 5.62198 5.64154 5.80108 6.00593 6.10885 6.48975 7.21895 7.36680 7.66608 7.89217 8.13893 8.63250 9.13247 9.38360 10.86702 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.034321 B = 0.002327 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.633445 B =12028.028801 C =12742.953824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.057 3.943 3 N -0.470 5.470 4 C 0.139 3.861 5 C -0.091 4.091 6 C -0.184 4.184 7 C 0.222 3.778 8 N -0.249 5.249 9 N -0.290 5.290 10 C 0.149 3.851 11 S 0.070 5.930 12 C -0.129 4.129 13 C 0.246 3.754 14 H 0.070 0.930 15 O -0.560 6.560 16 C -0.569 4.569 17 H 0.063 0.937 18 C 0.081 3.919 19 N -0.855 5.855 20 Si 0.898 3.102 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.271 1.271 24 O -0.208 6.208 25 S 0.185 5.815 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.351 0.649 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.085 8.167 0.272 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.220 4.220 3 N -0.185 5.185 4 C 0.000 4.000 5 C -0.150 4.150 6 C -0.306 4.306 7 C 0.008 3.992 8 N -0.098 5.098 9 N -0.143 5.143 10 C -0.166 4.166 11 S 0.303 5.697 12 C -0.278 4.278 13 C 0.185 3.815 14 H 0.088 0.912 15 O -0.363 6.363 16 C -0.609 4.609 17 H 0.081 0.919 18 C -0.126 4.126 19 N -0.490 5.490 20 Si 0.724 3.276 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.196 1.196 24 O -0.090 6.090 25 S 0.442 5.558 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.196 0.804 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.053 6.727 -0.202 24.977 hybrid contribution 1.114 1.839 0.361 2.180 sum -22.939 8.566 0.159 24.487 Atomic orbital electron populations 1.20541 0.84354 1.04744 1.04423 1.27336 1.02262 0.91246 1.01147 1.66199 1.03776 1.31193 1.17351 1.20656 0.90143 0.93016 0.96143 1.20676 0.96638 0.93627 1.04039 1.22234 0.91077 0.96381 1.20916 1.23532 0.94171 0.77723 1.03752 1.74519 0.93606 1.26179 1.15522 1.74991 1.21241 0.97737 1.20320 1.30783 0.82160 1.02371 1.01260 1.86575 0.97612 0.96927 1.88622 1.25249 0.90852 1.04781 1.06930 1.19300 0.88293 0.86674 0.87224 0.91208 1.86597 1.95126 1.39087 1.15462 1.21442 0.89952 0.93487 1.56017 0.91891 1.25038 0.99393 0.94754 0.93446 1.70069 1.28663 1.04294 1.45988 0.86526 0.83100 0.79568 0.78386 1.20339 1.20970 1.19611 1.85058 1.22624 1.29792 1.71485 1.84143 0.94703 1.09951 1.66977 0.88966 0.89622 0.88725 0.89721 0.88250 0.90226 0.88367 0.88912 0.80420 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.46 36.00 0.38 0.02 16 2 C 0.06 0.49 7.38 -13.40 -0.10 0.39 16 3 N -0.47 -5.21 10.51 -7.73 -0.08 -5.29 16 4 C 0.14 1.68 6.79 -83.81 -0.57 1.11 16 5 C -0.09 -0.98 9.82 36.01 0.35 -0.62 16 6 C -0.18 -2.38 6.50 -37.00 -0.24 -2.62 16 7 C 0.22 3.48 8.17 -14.19 -0.12 3.36 16 8 N -0.25 -4.25 9.86 31.98 0.32 -3.94 16 9 N -0.29 -5.38 11.61 30.33 0.35 -5.02 16 10 C 0.15 2.63 8.53 52.50 0.45 3.08 16 11 S 0.07 1.22 21.95 -107.50 -2.36 -1.14 16 12 C -0.13 -2.51 4.86 37.16 0.18 -2.33 16 13 C 0.25 5.75 2.87 -27.88 -0.08 5.67 16 14 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 15 O -0.56 -13.26 12.32 -35.23 -0.43 -13.70 16 16 C -0.57 -14.66 8.76 -34.44 -0.30 -14.96 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 18 C 0.08 2.16 5.40 -17.82 -0.10 2.06 16 19 N -0.86 -24.02 12.84 55.43 0.71 -23.31 16 20 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 O -0.21 -3.44 10.93 1.90 0.02 -3.42 16 25 S 0.19 1.77 23.17 -107.50 -2.49 -0.72 16 26 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.10 1.21 6.09 -51.93 -0.32 0.89 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 1.89 8.14 -51.91 -0.42 1.47 16 33 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 34 H 0.35 7.34 9.04 45.56 0.41 7.75 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 339.88 15.07 5.12 5.12 Total: -1.00 -30.57 339.88 -6.84 -37.41 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -2.83 Total: 3.51 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -0.14 Total: -4.84 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 1.30 Total: -37.56 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.41 Total: -17.11 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -4.85 Total: -1.86 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.57 -6.84 -37.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001472973794.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.254 kcal (2) G-P(sol) polarization free energy of solvation -30.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds